CGSNL
Gene
Symbol
|
Gene symbol synonym(s)
|
CGSNL Gene Name
|
Gene name synonym(s)
|
Chr. No.
|
Trait Class
|
Gene Ontology
|
Trait Ontology
|
Plant Ontology
|
RAP ID
|
MSU ID
|
Mutant
Image
|
|
CIPK17
|
OsCIPK17
OsSnRK3.14
SnRK3.14
|
CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17
|
CBL-interacting protein kinase 17
Sucrose nonfermenting-1-related protein kinase 3.14
|
5
|
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Character as QTL - Germination
Biochemical character
|
GO:0046686 - response to cadmium ion
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0006952 - defense response
GO:0005737 - cytoplasm
GO:0009408 - response to heat
GO:0010187 - negative regulation of seed germination
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0030145 - manganese ion binding
|
TO:0000112 - disease resistance
TO:0000259 - heat tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000352 - plant dry weight
TO:0000578 - root fresh weight
TO:0000227 - root length
TO:0000207 - plant height
|
PO:0009005 - root
|
Os05g0136200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g04550.1
|
|
|
DMI3
|
OsDMI3
OsCCaMK1
OsCCaMK
OsCCAMK
CCAMK
|
DOESN'T MAKE INFECTIONS 3
|
DOESN'T MAKE INFECTIONS3
calcium and calmodulin-dependent protein kinase 1
Ca2+/calmodulin (CaM)-dependent protein kinase
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE
|
5
|
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
|
GO:0009610 - response to symbiotic fungus
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0009734 - auxin mediated signaling pathway
GO:0009651 - response to salt stress
GO:0048364 - root development
GO:0019722 - calcium-mediated signaling
GO:0010726 - positive regulation of hydrogen peroxide metabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0005524 - ATP binding
GO:0005509 - calcium ion binding
GO:0006979 - response to oxidative stress
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0010030 - positive regulation of seed germination
GO:0050832 - defense response to fungus
GO:0047484 - regulation of response to osmotic stress
GO:0006970 - response to osmotic stress
GO:0018107 - peptidyl-threonine phosphorylation
GO:0060267 - positive regulation of respiratory burst
GO:0030104 - water homeostasis
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0042542 - response to hydrogen peroxide
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0004683 - calmodulin-dependent protein kinase activity
GO:0043408 - regulation of MAPKKK cascade
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0009414 - response to water deprivation
GO:0016021 - integral to membrane
|
TO:0000615 - abscisic acid sensitivity
TO:0000656 - root development trait
TO:0002657 - oxidative stress
TO:0000136 - relative water content
TO:0000074 - blast disease
TO:0000605 - hydrogen peroxide content
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000516 - relative root length
TO:0000276 - drought tolerance
TO:0002672 - auxin content
|
PO:0007520 - root development stage
PO:0007057 - 0 seed germination stage
|
Os05g0489900
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g41090.1
|
|
|
RBOHB
|
rbohB
OsrbohB
Os rbohB
OsRbohB
OsNox1
Nox1
Os-RbohB
RbohB
OsRboh1
Rboh1
|
RESPIRATORY BURST OXIDASE HOMOLOG B
|
Respiratory Burst Oxidase Homolog B
Respiratory Burst Oxidase Homologue B
NADPH oxidase 1
|
1
|
Biochemical character
Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility
Character as QTL - Germination
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
|
GO:0009687 - abscisic acid metabolic process
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0009751 - response to salicylic acid stimulus
GO:0004601 - peroxidase activity
GO:0005509 - calcium ion binding
GO:0009408 - response to heat
GO:0009734 - auxin mediated signaling pathway
GO:0009845 - seed germination
GO:0006952 - defense response
GO:0009626 - plant-type hypersensitive response
GO:0030104 - water homeostasis
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0002238 - response to molecule of fungal origin
GO:0009753 - response to jasmonic acid stimulus
GO:0005886 - plasma membrane
GO:0010266 - response to vitamin B1
GO:0050832 - defense response to fungus
GO:0009737 - response to abscisic acid stimulus
GO:0043621 - protein self-association
GO:0009733 - response to auxin stimulus
GO:0050665 - hydrogen peroxide biosynthetic process
GO:0006970 - response to osmotic stress
GO:0009413 - response to flooding
GO:0048364 - root development
GO:0006979 - response to oxidative stress
GO:0016174 - NAD(P)H oxidase activity
GO:0002679 - respiratory burst during defense response
GO:0009738 - abscisic acid mediated signaling
GO:0016021 - integral to membrane
GO:0009566 - fertilization
GO:0010118 - stomatal movement
GO:0043020 - NADPH oxidase complex
GO:0042742 - defense response to bacterium
|
TO:0000112 - disease resistance
TO:0000605 - hydrogen peroxide content
TO:0000175 - bacterial blight disease resistance
TO:0000656 - root development trait
TO:0002657 - oxidative stress
TO:0006002 - proline content
TO:0000276 - drought tolerance
TO:0000163 - auxin sensitivity
TO:0000074 - blast disease
TO:0000439 - fungal disease resistance
TO:0000136 - relative water content
TO:0000172 - jasmonic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000524 - submergence tolerance
TO:0006001 - salt tolerance
TO:0002667 - abscisic acid content
TO:0000095 - osmotic response sensitivity
TO:0000129 - false smut disease resistance
TO:0000520 - stomatal closure rate
TO:0000430 - germination rate
TO:0000382 - 1000-seed weight
|
PO:0025034 - leaf
|
Os01g0360200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g25820.2
LOC_Os01g25820.1
|
|
|
AMY1A
|
Amy1A/C*(RAmy1A/C)
alpha Amy7
AMY1.1
Amy1A
RAmy1A/C
Amy1A/C*
Amy1
Amy1A_C
OsAmy1A
alphaAmy7-C
RAmy1A
AmyI-1
OsAmyI-1
OsRamy1A
RAmy1A
|
ALPHA-AMYLASE 1A
|
Alpha-amylase1A
Alpha-amylase-1A
Alpha-amylase isozyme 1B
Amylase-1
alpha-amylase I-1
|
2
|
Character as QTL - Grain quality
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
|
GO:0010353 - response to trehalose stimulus
GO:0010030 - positive regulation of seed germination
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0004556 - alpha-amylase activity
GO:0010182 - sugar mediated signaling
GO:0005983 - starch catabolic process
GO:0009739 - response to gibberellin stimulus
GO:0005987 - sucrose catabolic process
GO:0009408 - response to heat
GO:0005509 - calcium ion binding
GO:0010212 - response to ionizing radiation
|
TO:0000166 - gibberellic acid sensitivity
TO:0000161 - radiation response trait
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000266 - chalky endosperm
TO:0000409 - peak viscosity
TO:0000483 - germinability at low temperature
TO:0000259 - heat tolerance
TO:0002694 - fruit flavor trait
TO:0000615 - abscisic acid sensitivity
|
PO:0001170 - seed development stage
PO:0007633 - endosperm development stage
PO:0009010 - seed
|
Os02g0765600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g52710.1
|
|
|
AMY1C
|
Amy1A/C*(RAmy1A/C)
alpha Amy10
Amy1C
RAmy1A/C
Amy1A/C*
Amy3
RAmy1C
OsAmy1C
alphaAmy10-C
OsRAmy3A
RAmy3A
|
ALPHA-AMYLASE 1C
|
Alpha-amylase1C
Alpha-amylase 1C
Amylase-3
Alpha-amylase-1A
alpha-amylase 10-C
|
2
|
Seed - Physiological traits - Dormancy
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Germination
|
GO:0009737 - response to abscisic acid stimulus
GO:0004556 - alpha-amylase activity
GO:0005983 - starch catabolic process
GO:0005975 - carbohydrate metabolic process
GO:0005509 - calcium ion binding
GO:0009651 - response to salt stress
GO:0009845 - seed germination
GO:0009408 - response to heat
|
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000266 - chalky endosperm
|
PO:0009010 - seed
PO:0007633 - endosperm development stage
PO:0007057 - 0 seed germination stage
|
Os02g0765400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g52700.1
|
|
|
AMY3C
|
Amy3A/B/C*(RAmy3A/B/C)
AmyII-6
AMY1.7
Amy3C
RAmy3A/B/C
Amy3A/B/C*
Amy7
AMY3B
RAmy3C
OsAmy3B
|
ALPHA-AMYLASE 3C
|
Alpha-amylase3C
Alpha-amylase isozyme 3C precursor
Alpha-amylase isozyme 3C
Amylase-7
Alpha-amylase-3A
|
9
|
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Dormancy
|
GO:0009739 - response to gibberellin stimulus
GO:0005509 - calcium ion binding
GO:0009737 - response to abscisic acid stimulus
GO:0004556 - alpha-amylase activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0005987 - sucrose catabolic process
GO:0005983 - starch catabolic process
GO:0005975 - carbohydrate metabolic process
GO:0009845 - seed germination
GO:0009408 - response to heat
|
TO:0000259 - heat tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000615 - abscisic acid sensitivity
|
PO:0007057 - 0 seed germination stage
|
Os09g0457800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g28420.1
|
|
|
CATA
|
CATA1
Cat A1*
OSCAT-A
Cat2
CatA1
CAT-A
OsCatA
OsCAT
CAT
catA
OSCATA
OsCATc
OsCATA
OsCAT1A
CAT1
OsCAT1
OsCATC
OsCAT2
|
CATALASE A
|
CATALASE A
Catalase-2*
Catalase-Al (cDNA clone)
Catalase isozyme A
|
2
|
Biochemical character
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
|
GO:0009609 - response to symbiotic bacterium
GO:0005634 - nucleus
GO:0043067 - regulation of programmed cell death
GO:0009737 - response to abscisic acid stimulus
GO:0009514 - glyoxysome
GO:0042542 - response to hydrogen peroxide
GO:0006979 - response to oxidative stress
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0004096 - catalase activity
GO:0042744 - hydrogen peroxide catabolic process
GO:0055114 - oxidation reduction
GO:0042742 - defense response to bacterium
GO:0010446 - response to alkalinity
GO:0009845 - seed germination
GO:0005737 - cytoplasm
GO:0009725 - response to hormone stimulus
GO:0009738 - abscisic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
GO:0009651 - response to salt stress
GO:0005829 - cytosol
GO:0005777 - peroxisome
GO:0006801 - superoxide metabolic process
GO:0051775 - response to redox state
GO:0020037 - heme binding
GO:0009751 - response to salicylic acid stimulus
GO:0010332 - response to gamma radiation
GO:0009414 - response to water deprivation
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0010029 - regulation of seed germination
|
TO:0000207 - plant height
TO:0001016 - relative chlorophyll content
TO:0000136 - relative water content
TO:0000382 - 1000-seed weight
TO:0000031 - silicon sensitivity
TO:0000326 - leaf color
TO:0000303 - cold tolerance
TO:0000175 - bacterial blight disease resistance
TO:0000259 - heat tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000455 - seed set percent
TO:0000615 - abscisic acid sensitivity
TO:0000152 - panicle number
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0002657 - oxidative stress
TO:0000401 - plant growth hormone sensitivity
TO:0000481 - alkali sensitivity
TO:0000605 - hydrogen peroxide content
|
PO:0009047 - stem
PO:0009010 - seed
PO:0009066 - anther
PO:0007022 - seed imbibition stage
PO:0007057 - 0 seed germination stage
PO:0025034 - leaf
|
Os02g0115700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g02400.2
LOC_Os02g02400.3
LOC_Os02g02400.1
|
|
|
ABI5
|
OsABI5
OsbZIP10
OsABF1
OREB1
OsABI5-1
OsABI5-2
OsOREB1
OREB1
|
ABA INSENSITIVE 5
|
ABA Insensitive 5
bZIP-type transcription factor ABI5
bZIP transcription factors OsABI5
bZIP transcription factor 10
Abscisic acid insensitive 5
|
1
|
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Grain shape
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Character as QTL - Germination
Character as QTL - Grain quality
Character as QTL - Yield and productivity
|
GO:0009725 - response to hormone stimulus
GO:0010029 - regulation of seed germination
GO:0010162 - seed dormancy
GO:0045449 - regulation of transcription
GO:0009787 - regulation of abscisic acid mediated signaling
GO:0010581 - regulation of starch biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0045454 - cell redox homeostasis
GO:0005982 - starch metabolic process
GO:0006995 - cellular response to nitrogen starvation
GO:0005985 - sucrose metabolic process
GO:0009753 - response to jasmonic acid stimulus
GO:0010187 - negative regulation of seed germination
GO:0042744 - hydrogen peroxide catabolic process
GO:0009409 - response to cold
GO:0046345 - abscisic acid catabolic process
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009651 - response to salt stress
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0031667 - response to nutrient levels
GO:0010152 - pollen maturation
GO:0003700 - transcription factor activity
GO:0009845 - seed germination
GO:0042594 - response to starvation
GO:0009739 - response to gibberellin stimulus
GO:0009733 - response to auxin stimulus
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0019740 - nitrogen utilization
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0030187 - melatonin biosynthetic process
|
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
TO:0000250 - vigor related trait
TO:0000401 - plant growth hormone sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000430 - germination rate
TO:0000696 - starch content
TO:0000196 - amylose content
TO:0000097 - amylopectin content
TO:0000382 - 1000-seed weight
TO:0002658 - starch grain synthesis
TO:0002656 - starch grain shape
TO:0000266 - chalky endosperm
TO:0000399 - grain thickness
TO:0000590 - grain weight
TO:0000134 - alkali digestion
TO:0002667 - abscisic acid content
TO:0000011 - nitrogen sensitivity
TO:0000396 - grain yield
TO:0000172 - jasmonic acid sensitivity
TO:0000053 - pollen sterility
TO:0000253 - seed dormancy
TO:0002672 - auxin content
TO:0000604 - fat and essential oil content
TO:0002653 - endosperm storage protein content
TO:0000300 - glucose content
TO:0000455 - seed set percent
TO:0000040 - panicle length
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000487 - endosperm color
TO:0000162 - seed quality
TO:0000166 - gibberellic acid sensitivity
TO:0000163 - auxin sensitivity
TO:0000919 - grain weight
TO:0000397 - grain size
TO:0000483 - germinability at low temperature
TO:0000420 - fertility related trait
TO:0000429 - salt sensitivity
|
PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
PO:0020091 - obsolete microgametophyte
PO:0025500 - whole plant fruit development stage
PO:0009010 - seed
|
Os01g0859300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
|
|
|
GT1
|
HOX12
Oshox12
OsHox12
OsGT1
|
GRASSY TILLER 1
|
rice homeobox gene 12
Homeobox-leucine zipper protein HOX12
Homeodomain transcription factor HOX12
HD-ZIP protein HOX12
grassy tiller1
|
3
|
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Vegetative organ - Culm
|
GO:0003700 - transcription factor activity
GO:0009845 - seed germination
GO:0005634 - nucleus
GO:0009413 - response to flooding
GO:0009409 - response to cold
GO:0009685 - gibberellin metabolic process
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0030912 - response to deep water
GO:0043565 - sequence-specific DNA binding
GO:0048658 - tapetal layer development
GO:0010336 - gibberellic acid homeostasis
|
TO:0000329 - tillering ability
TO:0000346 - tiller number
TO:0002675 - gibberellic acid content
TO:0001002 - inflorescence exsertion
TO:0000303 - cold tolerance
TO:0000524 - submergence tolerance
|
PO:0007045 - coleoptile emergence stage
PO:0009049 - inflorescence
PO:0009066 - anther
PO:0007057 - 0 seed germination stage
|
Os03g0198600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g10210.1
|
|
|
LEC1
|
OsHAP3E
HAP3E
OsLEC1/OsHAP3E
OsLEC1
LEC1
OsNF-YB7
NF-YB7
NFYB7
L1L
OsLEC1B
LEC1B
|
LEAFY COTYLEDON 1
|
HAP3 subunit E
LEC1-type 3 subunit protein-E
leafy cotyledon 1
NUCLEAR FACTOR-Y subunit B7
NUCLEAR FACTOR-Y subunit NF-YB7
LEC1-LIKE
LEAFY COTYLEDON1-LIKE
HAP3 SUBUNIT E
NF-YB subunit 7
NF-YB family 7
LEAFY COTYLEDON1
|
2
|
Coloration - Chlorophyll
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Sterility
|
GO:0009790 - embryonic development
GO:0010109 - regulation of photosynthesis
GO:0048700 - acquisition of desiccation tolerance
GO:0010099 - regulation of photomorphogenesis
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010187 - negative regulation of seed germination
GO:0009269 - response to desiccation
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010431 - seed maturation
GO:0048316 - seed development
GO:0015995 - chlorophyll biosynthetic process
GO:0009734 - auxin mediated signaling pathway
GO:0043565 - sequence-specific DNA binding
GO:0009740 - gibberellic acid mediated signaling
GO:0009733 - response to auxin stimulus
GO:0008284 - positive regulation of cell proliferation
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0009738 - abscisic acid mediated signaling
GO:0015979 - photosynthesis
GO:0009845 - seed germination
|
TO:0000430 - germination rate
TO:0000428 - callus induction
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000163 - auxin sensitivity
TO:0000620 - embryo development trait
TO:0000391 - seed size
TO:0002661 - seed maturation
TO:0000276 - drought tolerance
TO:0000485 - sterility related trait
TO:0000064 - embryo related trait
TO:0000495 - chlorophyll content
TO:0000207 - plant height
TO:0000488 - seed composition based quality trait
|
PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
PO:0007631 - plant embryo stage
PO:0009010 - seed
PO:0020110 - scutellum
PO:0005421 - parenchyma
PO:0009009 - plant embryo
PO:0005052 - plant callus
PO:0007632 - seed maturation stage
|
Os02g0725700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g49370.1
LOC_Os02g49370.2
|
|
|
HAP3K
|
OsHAP3K/OsNF-YB1
OsHAP3K
OsNF-YB1
NF-YB1
nf-yb1
OsLEC1
OsNF-YB-1
NFYB1
OsEnS-41
|
HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX
|
Nuclear transcription factor Y subunit B-1
CCAAT-binding transcription factor subunit NF-YB1
leafy cotyledon 1
endosperm-specific gene 41
Nuclear Factor YB1
NUCLEAR FACTOR-Y subunit B1
NUCLEAR FACTOR-Y subunit NF-YB1
NF-YB subunit 1
NF-YB family 1
|
2
|
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Seed - Morphological traits
Other
Character as QTL - Germination
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
|
GO:0010581 - regulation of starch biosynthetic process
GO:0048316 - seed development
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0048623 - seed germination on parent plant
GO:0010162 - seed dormancy
GO:0009737 - response to abscisic acid stimulus
GO:0010600 - regulation of auxin biosynthetic process
GO:0043565 - sequence-specific DNA binding
GO:0008283 - cell proliferation
GO:0009960 - endosperm development
GO:0009738 - abscisic acid mediated signaling
GO:0010431 - seed maturation
GO:0045449 - regulation of transcription
GO:0005829 - cytosol
GO:0009651 - response to salt stress
GO:0005737 - cytoplasm
|
TO:0000734 - grain length
TO:0000184 - seed anatomy and morphology trait
TO:0000408 - hot paste viscosity
TO:0000409 - peak viscosity
TO:0000653 - seed development trait
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0000397 - grain size
TO:0000196 - amylose content
TO:0000379 - cool paste viscosity
TO:0000391 - seed size
TO:0000619 - vivipary
TO:0000399 - grain thickness
TO:0002661 - seed maturation
TO:0002672 - auxin content
TO:0000396 - grain yield
TO:0000696 - starch content
TO:0000604 - fat and essential oil content
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000382 - 1000-seed weight
TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000253 - seed dormancy
|
PO:0007633 - endosperm development stage
PO:0009089 - endosperm
PO:0001170 - seed development stage
PO:0007632 - seed maturation stage
PO:0006220 - central endosperm
PO:0005360 - aleurone layer
|
Os02g0725900
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g49410.1
|
|
|
HAP5F
|
OsHAP5F
NF-YC
CBF-C
OsNF-YC5
Os-NF-YC5
NF-YC5
NFYC5
|
HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX
|
Nuclear factor Y C5 subunit
Nuclear factor Y C subunit 5
NUCLEAR FACTOR-Y subunit C5
NUCLEAR FACTOR-Y subunit NF-YC5
NF-YC subunit 5
NF-YC family 5
|
8
|
Other
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
|
GO:0006979 - response to oxidative stress
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0009738 - abscisic acid mediated signaling
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0010187 - negative regulation of seed germination
GO:0043565 - sequence-specific DNA binding
GO:0009845 - seed germination
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0016602 - CCAAT-binding factor complex
GO:0046345 - abscisic acid catabolic process
GO:0010730 - negative regulation of hydrogen peroxide biosynthetic process
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0042744 - hydrogen peroxide catabolic process
GO:0010162 - seed dormancy
|
TO:0000172 - jasmonic acid sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000019 - seedling height
TO:0000276 - drought tolerance
TO:0002667 - abscisic acid content
TO:0000615 - abscisic acid sensitivity
TO:0000430 - germination rate
TO:0000280 - seedling vigor
TO:0000653 - seed development trait
TO:0002657 - oxidative stress
TO:0006001 - salt tolerance
TO:0000253 - seed dormancy
|
PO:0007057 - 0 seed germination stage
|
Os08g0206500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g10560.1
|
|
|
HAK21
|
OsHAK21
|
HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21
|
High-affinity Potassium(K+) Transporter 21
Potassium transporter 21
|
3
|
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Biochemical character
|
GO:0010030 - positive regulation of seed germination
GO:0006813 - potassium ion transport
GO:0030007 - cellular potassium ion homeostasis
GO:0009753 - response to jasmonic acid stimulus
GO:0030955 - potassium ion binding
GO:0009738 - abscisic acid mediated signaling
GO:0005886 - plasma membrane
GO:0006883 - cellular sodium ion homeostasis
GO:0010107 - potassium ion import
GO:0009737 - response to abscisic acid stimulus
GO:0006979 - response to oxidative stress
GO:0009651 - response to salt stress
GO:0015079 - potassium ion transmembrane transporter activity
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0042542 - response to hydrogen peroxide
GO:0016021 - integral to membrane
|
TO:0000172 - jasmonic acid sensitivity
TO:0000527 - sodium uptake
TO:0000605 - hydrogen peroxide content
TO:0002657 - oxidative stress
TO:0000653 - seed development trait
TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0000609 - potassium content
TO:0000514 - potassium uptake
TO:0000525 - sodium to potassium content ratio
|
PO:0005352 - xylem
PO:0009010 - seed
PO:0007057 - 0 seed germination stage
PO:0005421 - parenchyma
|
Os03g0576200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g37930.1
|
|
|
LOX-L2
|
OsLOX-L2
LOX1.1
LOX L-2
LOX-2
OsLOX2
LOX2
|
LIPOXYGENASE L2
|
Lipoxygenase 2
Lipoxygenase L-2
|
3
|
Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Physiological traits - Longevity
|
GO:0009266 - response to temperature stimulus
GO:0010030 - positive regulation of seed germination
GO:0055114 - oxidation reduction
GO:0048364 - root development
GO:0051707 - response to other organism
GO:0050832 - defense response to fungus
GO:0016165 - lipoxygenase activity
GO:0002213 - defense response to insect
GO:0005737 - cytoplasm
GO:0009793 - embryonic development ending in seed dormancy
GO:0009816 - defense response to bacterium, incompatible interaction
GO:0005506 - iron ion binding
GO:0009753 - response to jasmonic acid stimulus
GO:0009611 - response to wounding
GO:0009507 - chloroplast
GO:0009737 - response to abscisic acid stimulus
GO:0031408 - oxylipin biosynthetic process
|
TO:0000403 - leaf-folder resistance
TO:0000620 - embryo development trait
TO:0000074 - blast disease
TO:0000435 - seed longevity
TO:0000172 - jasmonic acid sensitivity
TO:0000432 - temperature response trait
|
PO:0009005 - root
PO:0007631 - plant embryo stage
PO:0007057 - 0 seed germination stage
PO:0009049 - inflorescence
PO:0009047 - stem
|
Os03g0738600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g52860.1
|
|
|
SDR4
|
Sdr4
OsSdr4
OsSdr4-n
OsSdr4-k
OsSdr4L
Sdr4L
|
SEED DORMANCY 4
|
Sdr4-like
|
7
|
Character as QTL - Germination
Seed - Physiological traits - Dormancy
|
GO:0009845 - seed germination
GO:0009738 - abscisic acid mediated signaling
GO:0048623 - seed germination on parent plant
GO:0010162 - seed dormancy
|
TO:0000619 - vivipary
TO:0000615 - abscisic acid sensitivity
TO:0000253 - seed dormancy
|
PO:0009010 - seed
|
Os07g0585700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os07g39700.1
|
|
|
PRR95
|
OsPRR95
Os-PRR95
Prr2
OsPRR2
OsCCT33
|
PSEUDO-RESPONSE REGULATOR 95
|
pseudo-response regulator 2
CCT domain-containing gene 33
CCT (CO, CO-LIKE and TOC1) domain protein 33
CCT domain protein 33
|
9
|
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
|
GO:0005634 - nucleus
GO:0006970 - response to osmotic stress
GO:0010030 - positive regulation of seed germination
GO:0009737 - response to abscisic acid stimulus
GO:0000156 - two-component response regulator activity
GO:0006351 - transcription, DNA-dependent
GO:0046345 - abscisic acid catabolic process
GO:0007623 - circadian rhythm
GO:0010446 - response to alkalinity
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009266 - response to temperature stimulus
GO:0009788 - negative regulation of abscisic acid mediated signaling
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009738 - abscisic acid mediated signaling
GO:0009409 - response to cold
GO:0010378 - temperature compensation of the circadian clock
GO:0048511 - rhythmic process
|
TO:0000303 - cold tolerance
TO:0000430 - germination rate
TO:0000481 - alkali sensitivity
TO:0000019 - seedling height
TO:0002667 - abscisic acid content
TO:0000432 - temperature response trait
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000095 - osmotic response sensitivity
|
PO:0025034 - leaf
PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
|
Os09g0532400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g36220.2
LOC_Os09g36220.1
|
|
|
EMF2B
|
OsEMF2b
EMF2b
GW9
OsGW9
GW9/OsEMF2b
OsPcG4
PcG4
|
EMBRYONIC FLOWER 2B
|
EMBRYONIC FLOWER 2b
grain weight 9
Polycomb group protein 4
|
9
|
Seed - Morphological traits - Grain shape
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
|
GO:0001558 - regulation of cell growth
GO:0042127 - regulation of cell proliferation
GO:0046872 - metal ion binding
GO:0005634 - nucleus
GO:0048573 - photoperiodism, flowering
GO:0010187 - negative regulation of seed germination
GO:0005622 - intracellular
GO:0031519 - PcG protein complex
GO:0005677 - chromatin silencing complex
GO:0048497 - maintenance of floral organ identity
GO:0031490 - chromatin DNA binding
GO:0070734 - histone H3-K27 methylation
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0008270 - zinc ion binding
GO:0009908 - flower development
GO:0030154 - cell differentiation
GO:0031507 - heterochromatin formation
GO:0010336 - gibberellic acid homeostasis
GO:0009740 - gibberellic acid mediated signaling
GO:0009651 - response to salt stress
|
TO:0000137 - days to heading
TO:0006001 - salt tolerance
TO:0000411 - seed length to width ratio
TO:0000145 - internode length
TO:0006019 - floral organ identity
TO:0000447 - filled grain number
TO:0000382 - 1000-seed weight
TO:0000339 - stem thickness
TO:0000430 - germination rate
TO:0002675 - gibberellic acid content
TO:0000734 - grain length
TO:0000657 - spikelet anatomy and morphology trait
TO:0000346 - tiller number
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0000207 - plant height
TO:0002616 - flowering time
TO:0000557 - secondary branch number
|
PO:0009005 - root
PO:0009006 - shoot system
PO:0009047 - stem
PO:0025034 - leaf
PO:0009049 - inflorescence
PO:0020104 - leaf sheath
PO:0025281 - pollen
PO:0007633 - endosperm development stage
PO:0020056 - tegmen
|
Os09g0306800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g13630.1
|
|
|
WFP
|
OsSPL14
SPL14
IPA1
WFP/IPA1
OsSPL14/WFP/IPA1
OsIPA1
IPA1/OsSPL14
|
WEALTHY FARMER'S PANICLE
|
IDEAL PLANT ARCHITECTURE 1
Ideal Plant Architecture 1
Ideal Plant Architecture1
Squamosa promoter-binding-like protein 14
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14
Squamosa promoter binding protein like-14
IDEAL PLANT ARCHITECTURE1
|
8
|
Seed
Character as QTL - Yield and productivity
Vegetative organ - Culm
Vegetative organ - Leaf
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Vegetative organ - Root
Character as QTL - Germination
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Reproductive organ - Panicle, Mode of branching
Seed - Physiological traits - Dormancy
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
|
GO:0003677 - DNA binding
GO:0010187 - negative regulation of seed germination
GO:0009740 - gibberellic acid mediated signaling
GO:0005634 - nucleus
GO:0048366 - leaf development
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0045449 - regulation of transcription
GO:0009960 - endosperm development
GO:0048623 - seed germination on parent plant
GO:0010231 - maintenance of seed dormancy
GO:0009607 - response to biotic stimulus
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0048506 - regulation of timing of meristematic phase transition
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009651 - response to salt stress
GO:0010081 - regulation of inflorescence meristem growth
GO:0009755 - hormone-mediated signaling
GO:0010432 - bract development
GO:0005982 - starch metabolic process
GO:0009409 - response to cold
GO:0060359 - response to ammonium ion
GO:0009736 - cytokinin mediated signaling
GO:0050832 - defense response to fungus
GO:0009626 - plant-type hypersensitive response
GO:0010050 - vegetative phase change
GO:0010162 - seed dormancy
GO:0048316 - seed development
GO:0045487 - gibberellin catabolic process
GO:0042742 - defense response to bacterium
GO:0048364 - root development
GO:0010229 - inflorescence development
|
TO:0002759 - grain number
TO:0006001 - salt tolerance
TO:0000340 - total soluble sugar content
TO:0002637 - leaf size
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
TO:0002689 - leaf sheath length
TO:0002675 - gibberellic acid content
TO:0000017 - anatomy and morphology related trait
TO:0000396 - grain yield
TO:0000329 - tillering ability
TO:0000166 - gibberellic acid sensitivity
TO:0000586 - seminal root length
TO:0000050 - inflorescence branching
TO:0000346 - tiller number
TO:0002685 - crown root number
TO:0000011 - nitrogen sensitivity
TO:0000152 - panicle number
TO:0000455 - seed set percent
TO:0000357 - growth and development trait
TO:0000135 - leaf length
TO:0000619 - vivipary
TO:0000179 - biotic stress trait
TO:0000253 - seed dormancy
TO:0000227 - root length
TO:0000656 - root development trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000696 - starch content
TO:0002653 - endosperm storage protein content
TO:0000447 - filled grain number
TO:0000547 - primary branch number
TO:0000303 - cold tolerance
TO:0000222 - head rice
TO:0000104 - floury endosperm
TO:0000487 - endosperm color
TO:0000109 - endosperm storage protein-2 content
TO:0000175 - bacterial blight disease resistance
TO:0000107 - endosperm storage protein-1 content
TO:0000456 - spikelet number
TO:0000074 - blast disease
|
PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0025487 - bract primordium
PO:0007057 - 0 seed germination stage
PO:0001083 - inflorescence development stage
PO:0007520 - root development stage
|
Os08g0509600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g39890.1
|
|
|
D2
|
d2
dwf2
CYP90D2
D2/CYP90D2
OsD2
SMG11
OsSMG11
D2/SMG11
OsD2a
OsD2b
|
DWARF EBISU
|
ebisu dwarf
dwarf-2
cytochrome P450 CYP90D2
Ebisu dwarf/Dwarf2
Dwarf2
SMALL GRAIN 11
cytochrome P450 D2
|
1
|
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Tolerance and resistance - Disease resistance
Seed - Morphological traits - Grain shape
Character as QTL - Germination
Vegetative organ - Leaf
Vegetative organ - Culm
|
GO:0051607 - defense response to virus
GO:0004497 - monooxygenase activity
GO:0009055 - electron carrier activity
GO:0005506 - iron ion binding
GO:0009742 - brassinosteroid mediated signaling
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016132 - brassinosteroid biosynthetic process
GO:0050832 - defense response to fungus
GO:0010029 - regulation of seed germination
GO:0006970 - response to osmotic stress
GO:0009409 - response to cold
GO:0010224 - response to UV-B
GO:0009651 - response to salt stress
GO:0009741 - response to brassinosteroid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0020037 - heme binding
GO:0016021 - integral to membrane
GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid
GO:0007275 - multicellular organismal development
|
TO:0000207 - plant height
TO:0000255 - sheath blight disease resistance
TO:0000346 - tiller number
TO:0000329 - tillering ability
TO:0002677 - brassinosteroid sensitivity
TO:0000132 - basal internode diameter
TO:0000391 - seed size
TO:0000303 - cold tolerance
TO:0000206 - leaf angle
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000430 - germination rate
TO:0000020 - black streak dwarf virus resistance
TO:0000601 - UV-B light sensitivity
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0002759 - grain number
TO:0000397 - grain size
TO:0000567 - tiller angle
TO:0006032 - panicle size
TO:0000262 - panicle shape
TO:0000172 - jasmonic acid sensitivity
TO:0000135 - leaf length
TO:0000299 - leaf lamina color
TO:0000040 - panicle length
|
PO:0007057 - 0 seed germination stage
|
Os01g0197100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g10040.2
LOC_Os01g10040.1
|
|
|
D1
|
d1
GPA1
GA1
OsGA1
RGA1
OsRGA1
dwf1
XA7
RGA
D1/RGA1
D89
TGW5
OsTGW5
SRG5
OsSRG5
|
DAIKOKU DWARF
|
daikoku dwarf
XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7
dwarf-1
Guanine nucleotide-binding protein alpha-1 subunit
GP-alpha-1
Protein Dwarf1
G-protein alpha subunit
GP-alpha-1
G-protein alpha subunit 1
dwarf69
dwarf 69
GTP binding protein alpha-subunit
dwarf 89
rice G protein a subunit 1
G protein a subunit 1
heterotrimeric G protein alpha-subunit
Thousand-Grain-Weight 5
small and round grain 5
|
5
|
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Seed - Morphological traits - Grain shape
Character as QTL - Germination
Character as QTL - Grain quality
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility
|
GO:0080092 - regulation of pollen tube growth
GO:0003924 - GTPase activity
GO:0043067 - regulation of programmed cell death
GO:0004871 - signal transducer activity
GO:0009645 - response to low light intensity stimulus
GO:0005525 - GTP binding
GO:0045454 - cell redox homeostasis
GO:0009740 - gibberellic acid mediated signaling
GO:0006970 - response to osmotic stress
GO:0009755 - hormone-mediated signaling
GO:0010618 - aerenchyma formation
GO:0009687 - abscisic acid metabolic process
GO:0070509 - calcium ion import
GO:0010029 - regulation of seed germination
GO:0019722 - calcium-mediated signaling
GO:0005886 - plasma membrane
GO:0009269 - response to desiccation
GO:0005834 - heterotrimeric G-protein complex
GO:0010233 - phloem transport
GO:0006471 - protein amino acid ADP-ribosylation
GO:0048830 - adventitious root development
GO:0006952 - defense response
GO:0015770 - sucrose transport
GO:0009408 - response to heat
GO:0010038 - response to metal ion
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0007275 - multicellular organismal development
GO:0007186 - G-protein coupled receptor protein signaling pathway
GO:0009725 - response to hormone stimulus
|
TO:0000576 - stem length
TO:0000382 - 1000-seed weight
TO:0000162 - seed quality
TO:0000557 - secondary branch number
TO:0000449 - grain yield per plant
TO:0000266 - chalky endosperm
TO:0000734 - grain length
TO:0000455 - seed set percent
TO:0000592 - 1000-dehulled grain weight
TO:0000080 - micronutrient sensitivity
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000145 - internode length
TO:0000299 - leaf lamina color
TO:0000492 - leaf shape
TO:0000391 - seed size
TO:0000040 - panicle length
TO:0000089 - panicle type
TO:0000462 - gelatinization temperature
TO:0002730 - grain shape
TO:0000259 - heat tolerance
TO:0000401 - plant growth hormone sensitivity
TO:0000135 - leaf length
TO:0000484 - seed shape
TO:0000303 - cold tolerance
TO:0000095 - osmotic response sensitivity
TO:0000132 - basal internode diameter
TO:0000397 - grain size
TO:0000408 - hot paste viscosity
TO:0002667 - abscisic acid content
TO:0000615 - abscisic acid sensitivity
TO:0000326 - leaf color
TO:0000507 - osmotic adjustment capacity
TO:0000276 - drought tolerance
TO:0000158 - red light sensitivity
TO:0000447 - filled grain number
TO:0000460 - light intensity sensitivity
TO:0000180 - spikelet fertility
TO:0000605 - hydrogen peroxide content
TO:0000327 - biomass yield
TO:0000207 - plant height
TO:0000227 - root length
TO:0000233 - root volume
TO:0000656 - root development trait
TO:0000370 - leaf width
TO:0000346 - tiller number
|
PO:0020142 - stem internode
PO:0009049 - inflorescence
PO:0020039 - leaf lamina
PO:0000003 - whole plant
PO:0009010 - seed
PO:0009025 - vascular leaf
PO:0009047 - stem
|
Os05g0333200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g26890.1
|
|
|
AMY2A
|
Amy2A*(RAmy2A)
AMY1.5
AMYC2
RAmy2A
Amy4
Amy2A
|
ALPHA-AMYLASE 2A
|
Alpha-amylase2A
Alpha-amylase isozyme 2A
Alpha-amylase isozyme C2
Alpha-amylase-2A
Amylase-4
|
6
|
Biochemical character
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Vegetative organ - Culm
|
GO:0080006 - internode patterning
GO:0009739 - response to gibberellin stimulus
GO:0010182 - sugar mediated signaling
GO:0009414 - response to water deprivation
GO:0004556 - alpha-amylase activity
GO:0005509 - calcium ion binding
GO:0005975 - carbohydrate metabolic process
GO:0005983 - starch catabolic process
GO:0005987 - sucrose catabolic process
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0032940 - secretion by cell
|
TO:0000544 - mesocotyl length
TO:0000276 - drought tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000266 - chalky endosperm
|
|
Os06g0713800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os06g49970.2
|
|
|
qGR-3-1 (qGR7-1)
|
qGR-3-1 (qGR7-1)
|
Germination rate (QTL)-7-1
|
Germination rate (QTL)-7-1
|
|
Character as QTL - Germination
|
|
|
|
-
|
|
|
|
KAO
|
OsKAO
kao
CYP88A5
OSKAO
Os KAO
RPE1
KO1
|
ENT-KAURENE OXIDASE
|
rice ent-kaurenoic acid oxidase
ent-kaurenoic acid oxidase
Putative cytochrome P450 DWARF3
reduced pollen elongation1
|
6
|
Character as QTL - Germination
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
|
GO:0080006 - internode patterning
GO:0009651 - response to salt stress
GO:0009566 - fertilization
GO:0009685 - gibberellin metabolic process
GO:0009860 - pollen tube growth
GO:0009686 - gibberellin biosynthetic process
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0032940 - secretion by cell
GO:0004497 - monooxygenase activity
GO:0022900 - electron transport chain
GO:0009739 - response to gibberellin stimulus
|
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000421 - pollen fertility
TO:0000357 - growth and development trait
TO:0000420 - fertility related trait
TO:0000599 - enzyme activity
TO:0000544 - mesocotyl length
TO:0002675 - gibberellic acid content
|
|
Os06g0110000
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os06g02019.1
|
|
|
ONAC300
|
ONAC077
NAC77
OsNAC77
NAC300
OsNAC300
ONAC132
NAC132
OsNAC132
DLN250
OsDLN250
|
NAC DOMAIN-CONTAINING PROTEIN 300
|
NAC domain-containing protein 30
NAC domain-containing protein 77
NAC domain-containing protein 132
DLN repressor 250
DLN motif protein 250
|
12
|
Character as QTL - Germination
Character as QTL - Plant growth activity
Tolerance and resistance - Stress tolerance
Other
Coloration - Chlorophyll
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
|
GO:0009628 - response to abiotic stimulus
GO:0006952 - defense response
GO:0009408 - response to heat
GO:0009845 - seed germination
GO:0009413 - response to flooding
GO:0010150 - leaf senescence
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0045449 - regulation of transcription
GO:0051607 - defense response to virus
GO:0009629 - response to gravity
|
TO:0000020 - black streak dwarf virus resistance
TO:0000259 - heat tolerance
TO:0000112 - disease resistance
TO:0000249 - leaf senescence
TO:0000495 - chlorophyll content
TO:0000605 - hydrogen peroxide content
TO:0000455 - seed set percent
TO:0000326 - leaf color
TO:0000168 - abiotic stress trait
TO:0000386 - rice ragged stunt virus resistance
TO:0000213 - rice grassy stunt 1 and 2 virus resistance
TO:0000148 - viral disease resistance
TO:0000524 - submergence tolerance
TO:0002693 - gravity response trait
|
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os12g0123800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os12g03050.1
|
|
|
OSK1
|
osk1
SnRK1A
OsSnRK1A
OsSNRK1a
SnRK1A/OSK1
SnRK1a
OsSnRK1.2
SnRK1.2
OsSnRK1alphaA
SnRK1alphaA
|
PROTEIN KINASE 1
|
protein kinase 1
SnRK1A protein kinase
sucrose non-fermenting-1 related protein kinase 1a
SNF1-Related Protein Kinase 1A
|
5
|
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Seed
Tolerance and resistance - Stress tolerance
Biochemical character
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Root
Vegetative organ - Culm
|
GO:0009409 - response to cold
GO:0017148 - negative regulation of translation
GO:0022414 - reproductive process
GO:0042594 - response to starvation
GO:0005524 - ATP binding
GO:0009845 - seed germination
GO:0010030 - positive regulation of seed germination
GO:0007165 - signal transduction
GO:0009863 - salicylic acid mediated signaling pathway
GO:0050832 - defense response to fungus
GO:0009607 - response to biotic stimulus
GO:0002679 - respiratory burst during defense response
GO:0002253 - activation of immune response
GO:0009646 - response to absence of light
GO:0033500 - carbohydrate homeostasis
GO:0010336 - gibberellic acid homeostasis
GO:0009737 - response to abscisic acid stimulus
GO:0009628 - response to abiotic stimulus
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009743 - response to carbohydrate stimulus
GO:0005634 - nucleus
GO:0042742 - defense response to bacterium
GO:0080094 - response to trehalose-6-phosphate stimulus
GO:0080141 - regulation of jasmonic acid biosynthetic process
GO:0045926 - negative regulation of growth
GO:0052544 - callose deposition in cell wall during defense response
GO:0051093 - negative regulation of developmental process
GO:0043617 - cellular response to sucrose starvation
GO:0005737 - cytoplasm
GO:0031667 - response to nutrient levels
GO:0002238 - response to molecule of fungal origin
GO:0006468 - protein amino acid phosphorylation
GO:0008643 - carbohydrate transport
GO:0009651 - response to salt stress
GO:0007623 - circadian rhythm
GO:0009685 - gibberellin metabolic process
GO:0004674 - protein serine/threonine kinase activity
GO:2000028 - regulation of photoperiodism, flowering
GO:0051511 - negative regulation of unidimensional cell growth
GO:0010200 - response to chitin
GO:0010182 - sugar mediated signaling
GO:0010431 - seed maturation
GO:0048316 - seed development
|
TO:0000456 - spikelet number
TO:0001015 - photosynthetic rate
TO:0006003 - oligosaccharide content
TO:0000291 - carbohydrate content
TO:0000328 - sucrose content
TO:0000397 - grain size
TO:0000001 - carbon sensitivity
TO:0000371 - yield trait
TO:0000653 - seed development trait
TO:0000457 - total biomass yield
TO:0000396 - grain yield
TO:0000227 - root length
TO:0000137 - days to heading
TO:0000571 - shoot fresh weight
TO:0000552 - shoot dry weight
TO:0000168 - abiotic stress trait
TO:0000280 - seedling vigor
TO:0000420 - fertility related trait
TO:0000455 - seed set percent
TO:0000357 - growth and development trait
TO:0000576 - stem length
TO:0000179 - biotic stress trait
TO:0000460 - light intensity sensitivity
TO:0002664 - leaf yellowing tolerance
TO:0002668 - jasmonic acid content
TO:0000636 - relative shoot dry weight
TO:0000327 - biomass yield
TO:0000480 - nutrient sensitivity
TO:0000356 - brown spot disease resistance
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000253 - seed dormancy
TO:0000153 - relative yield
TO:0006001 - salt tolerance
TO:0000430 - germination rate
TO:0002661 - seed maturation
TO:0000074 - blast disease
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000447 - filled grain number
TO:0002616 - flowering time
TO:0000366 - reproductive growth time
TO:0000255 - sheath blight disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
|
PO:0005052 - plant callus
PO:0009049 - inflorescence
PO:0001170 - seed development stage
PO:0007632 - seed maturation stage
PO:0025034 - leaf
PO:0025082 - reproductive shoot system
|
Os05g0530500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g45420.1
LOC_Os05g45420.3
LOC_Os05g45420.2
|
|
|
OSK3
|
osk3
OsATG1b
ATG1B
OSK5
osk5
OSK35
SnRK1b
OsK35
OsSnRK1.1
SnRK1.1
OsSnRK1alphaB
SnRK1alphaB
|
PROTEIN KINASE 3
|
protein kinase 3
autophagy 1b
AUTOPHAGY ASSOCIATED GENE 1B
protein kinase 5
sucrose non-fermenting-1 related protein kinase 1b
SUCROSE NON-FERMENTING 1-RELATED PROTEIN KINASE 1.1
|
3
|
Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
Character as QTL - Germination
Vegetative organ - Culm
|
GO:0048364 - root development
GO:0046777 - protein amino acid autophosphorylation
GO:0005524 - ATP binding
GO:0009738 - abscisic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
GO:0010029 - regulation of seed germination
GO:0009409 - response to cold
GO:0009737 - response to abscisic acid stimulus
GO:0007165 - signal transduction
GO:0009960 - endosperm development
GO:0006468 - protein amino acid phosphorylation
GO:0004674 - protein serine/threonine kinase activity
|
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0000483 - germinability at low temperature
TO:0000166 - gibberellic acid sensitivity
TO:0000227 - root length
TO:0000430 - germination rate
|
PO:0005052 - plant callus
PO:0007131 - seedling development stage
|
Os03g0289100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g17980.1
LOC_Os03g17980.2
|
|
|
OSKN2
|
OsKn2
OsH71
HOS9
OSH71
OSH71/Oskn2
|
KNOX PROTEIN 2
|
KNOX protein 2
Oryza sativa homeobox71
Homeobox protein knotted-1-like 10
Homeobox protein OSH71
Homeobox protein HOS9
Homeobox protein knotted-1-like 2
Rice KNOX gene-71
|
5
|
Character as QTL - Germination
Reproductive organ - Heading date
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Seed - Physiological traits - Shattering
Vegetative organ - Culm
|
GO:0016020 - membrane
GO:0009629 - response to gravity
GO:0009845 - seed germination
GO:0005783 - endoplasmic reticulum
GO:0010229 - inflorescence development
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009413 - response to flooding
GO:0030912 - response to deep water
GO:0005737 - cytoplasm
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0060867 - fruit abscission
|
TO:0002729 - fruit senescing quality trait
TO:0000492 - leaf shape
TO:0000524 - submergence tolerance
TO:0002616 - flowering time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0002693 - gravity response trait
TO:0000473 - grain shattering
|
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
PO:0000146 - abscission zone
PO:0007045 - coleoptile emergence stage
PO:0025034 - leaf
|
Os05g0129700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g03884.1
|
|
|
NAC1
|
OsNAC1
ONAC027
ONAC27
NAC27
OMTN1
OsNAC1/ONAC027
DLN60
OsDLN60
OsORE1
|
NAC DOMAIN-CONTAINING PROTEIN 1
|
NAC domain-containing protein 027
NAC domain-containing protein 27
Oryza miR164-targeted NAC1
miR164-targeted NAC1
DLN repressor 60
DLN motif protein 60
|
2
|
Other
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
|
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009651 - response to salt stress
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0009629 - response to gravity
GO:0045449 - regulation of transcription
GO:0003677 - DNA binding
GO:0009409 - response to cold
GO:0009413 - response to flooding
GO:0009845 - seed germination
|
TO:0002693 - gravity response trait
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000524 - submergence tolerance
|
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os02g0579000
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g36880.4
LOC_Os02g36880.3
LOC_Os02g36880.2
LOC_Os02g36880.1
|
|
|
TIL1
|
NAC2
OsNAC2
ONAC004
ONAC4
ONAC034
ONAC34
ONAC058
ONAC58
OMTN2
Ostil1
OsNAC2/ONAC004
OsORE1.2
DLN113
OsDLN113
|
TILLERING 1
|
NAC domain-containing protein 004
NAC domain-containing protein 4
NAC domain-containing protein 34
NAC domain-containing protein 58
miR164-targeted NAC2
Oryza miR164-targeted NAC2
Oryza sativa tillering1
ORESARA 1.2
DLN repressor 113
DLN motif protein 113
|
4
|
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Vegetative organ - Leaf
Seed - Physiological traits - Dormancy
Other
Reproductive organ - Heading date
Vegetative organ - Root
Vegetative organ - Culm
|
GO:0080036 - regulation of cytokinin mediated signaling
GO:0006979 - response to oxidative stress
GO:0080142 - regulation of salicylic acid biosynthetic process
GO:0010446 - response to alkalinity
GO:0042742 - defense response to bacterium
GO:0009738 - abscisic acid mediated signaling
GO:0006970 - response to osmotic stress
GO:0009735 - response to cytokinin stimulus
GO:0010150 - leaf senescence
GO:0010730 - negative regulation of hydrogen peroxide biosynthetic process
GO:0009651 - response to salt stress
GO:0003677 - DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048573 - photoperiodism, flowering
GO:0009740 - gibberellic acid mediated signaling
GO:0009863 - salicylic acid mediated signaling pathway
GO:0009414 - response to water deprivation
GO:0048364 - root development
GO:0006350 - transcription
GO:0009737 - response to abscisic acid stimulus
GO:0005634 - nucleus
GO:0010942 - positive regulation of cell death
GO:0006309 - DNA fragmentation involved in apoptosis
GO:0009733 - response to auxin stimulus
GO:0010928 - regulation of auxin mediated signaling pathway
GO:0050777 - negative regulation of immune response
GO:0009788 - negative regulation of abscisic acid mediated signaling
GO:0009723 - response to ethylene stimulus
GO:0009751 - response to salicylic acid stimulus
GO:0045449 - regulation of transcription
GO:0010365 - positive regulation of ethylene biosynthetic process
GO:0010187 - negative regulation of seed germination
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0010029 - regulation of seed germination
|
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0002759 - grain number
TO:0000040 - panicle length
TO:0000430 - germination rate
TO:0001016 - relative chlorophyll content
TO:0000136 - relative water content
TO:0002657 - oxidative stress
TO:0000481 - alkali sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000276 - drought tolerance
TO:0000207 - plant height
TO:0002639 - shoot branching
TO:0000249 - leaf senescence
TO:0000450 - grain yield per panicle
TO:0000017 - anatomy and morphology related trait
TO:0000567 - tiller angle
TO:0000227 - root length
TO:0002685 - crown root number
TO:0002660 - cytokinin content
TO:0000167 - cytokinin sensitivity
TO:0000163 - auxin sensitivity
TO:0000095 - osmotic response sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000346 - tiller number
TO:0000145 - internode length
TO:0000166 - gibberellic acid sensitivity
TO:0002667 - abscisic acid content
TO:0000615 - abscisic acid sensitivity
TO:0000173 - ethylene sensitivity
TO:0006001 - salt tolerance
TO:0002616 - flowering time
TO:0002768 - spikelet length
|
PO:0000025 - root tip
PO:0001054 - 4 leaf senescence stage
PO:0000043 - crown root
PO:0005029 - root primordium
PO:0020121 - lateral root
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os04g0460600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os04g38720.1
|
|
|
NAC8
|
OsNAC8
ONAC074
ONAC74
NAC74
OsNAC74
OsNAC8/ONAC074
OsNTL3
NTL3
|
NAC DOMAIN-CONTAINING PROTEIN 8
|
OsNAC8 protein
NAC domain-containing protein 8
NAC domain-containing protein 074
NAC domain-containing protein 74
NAC membrane-bound transcription factor 3
NAC MTF3
|
1
|
Vegetative organ - Root
Other
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Seed - Morphological traits - Grain shape
Character as QTL - Germination
|
GO:0016020 - membrane
GO:0005985 - sucrose metabolic process
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0003677 - DNA binding
GO:0005982 - starch metabolic process
GO:0010581 - regulation of starch biosynthetic process
GO:0045449 - regulation of transcription
GO:0010029 - regulation of seed germination
GO:0009734 - auxin mediated signaling pathway
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0009738 - abscisic acid mediated signaling
GO:0034976 - response to endoplasmic reticulum stress
GO:0048364 - root development
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009408 - response to heat
GO:0009740 - gibberellic acid mediated signaling
GO:0005886 - plasma membrane
|
TO:0000259 - heat tolerance
TO:0001016 - relative chlorophyll content
TO:0002653 - endosperm storage protein content
TO:0000656 - root development trait
TO:0000149 - seed width
TO:0002668 - jasmonic acid content
TO:0006001 - salt tolerance
TO:0000146 - seed length
TO:0000227 - root length
TO:0002658 - starch grain synthesis
TO:0000430 - germination rate
TO:0000605 - hydrogen peroxide content
TO:0000655 - leaf development trait
TO:0002675 - gibberellic acid content
TO:0002667 - abscisic acid content
TO:0002672 - auxin content
TO:0000266 - chalky endosperm
TO:0000211 - gel consistency
TO:0000162 - seed quality
TO:0000391 - seed size
TO:0000462 - gelatinization temperature
TO:0000455 - seed set percent
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000382 - 1000-seed weight
TO:0002656 - starch grain shape
|
PO:0009010 - seed
PO:0009089 - endosperm
PO:0001050 - leaf development stage
PO:0007520 - root development stage
PO:0007057 - 0 seed germination stage
PO:0009046 - flower
PO:0025034 - leaf
PO:0009005 - root
|
Os01g0261200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g15640.1
|
|
|
PIP1A
|
OsPIP1a
OsPIP1;1
PIP1a
RWC-1
PIP1-1
RWC1
OsPIP1-1
PIP1;1
PIP1-5
|
PLASMA MEMBRANE INTRINSIC PROTEIN 1A
|
Aquaporin PIP1-1
Plasma membrane intrinsic protein 1-1
Plasma membrane intrinsic protein 1a
Water channel protein RWC1
plasma membrane intrinsic protein 1-5
|
2
|
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Vegetative organ - Culm
Biochemical character
|
GO:0009610 - response to symbiotic fungus
GO:0009609 - response to symbiotic bacterium
GO:0006970 - response to osmotic stress
GO:0005215 - transporter activity
GO:0005886 - plasma membrane
GO:0034021 - response to silicon dioxide
GO:0009845 - seed germination
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0046686 - response to cadmium ion
GO:0016021 - integral to membrane
GO:0055085 - transmembrane transport
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
|
TO:0000370 - leaf width
TO:0001015 - photosynthetic rate
TO:0000276 - drought tolerance
TO:0000095 - osmotic response sensitivity
TO:0000430 - germination rate
TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0002637 - leaf size
TO:0000135 - leaf length
TO:0000540 - leaf area
TO:0000434 - root activity
TO:0000319 - rubisco content
|
PO:0007057 - 0 seed germination stage
PO:0025034 - leaf
|
Os02g0666200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g44630.1
LOC_Os02g44630.3
LOC_Os02g44630.2
|
|
|
WRKY1
|
OsWRKY1
OsWRKY1v2
|
WRKY GENE1
|
Rice WRKY gene1
|
1
|
Tolerance and resistance - Disease resistance
Coloration - Anthocyanin
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Seed - Morphological traits
|
GO:0009413 - response to flooding
GO:0009845 - seed germination
GO:0031542 - positive regulation of anthocyanin biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009629 - response to gravity
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0043565 - sequence-specific DNA binding
GO:0006952 - defense response
|
TO:0000259 - heat tolerance
TO:0000303 - cold tolerance
TO:0002693 - gravity response trait
TO:0000524 - submergence tolerance
TO:0000175 - bacterial blight disease resistance
TO:0000276 - drought tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000707 - pericarp color
TO:0000071 - anthocyanin content
TO:0006001 - salt tolerance
|
PO:0007045 - coleoptile emergence stage
PO:0007057 - 0 seed germination stage
|
Os01g0246700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g14440.1
|
|
|
WRKY16
|
OsWRKY16
|
WRKY GENE16
|
Rice WRKY gene16
|
1
|
Character as QTL - Germination
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
|
GO:0009845 - seed germination
GO:0009413 - response to flooding
GO:0009629 - response to gravity
GO:0003700 - transcription factor activity
GO:0006952 - defense response
GO:0009408 - response to heat
GO:0009414 - response to water deprivation
GO:0042742 - defense response to bacterium
GO:0043565 - sequence-specific DNA binding
|
TO:0000276 - drought tolerance
TO:0000524 - submergence tolerance
TO:0000259 - heat tolerance
TO:0002693 - gravity response trait
TO:0000175 - bacterial blight disease resistance
|
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os01g0665500/Os01g0665750
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g47560.1
|
|
|
WRKY24
|
OsWRKY24
|
WRKY GENE 24
|
Rice WRKY gene24
|
1
|
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Insect resistance
Vegetative organ - Leaf
|
GO:0009845 - seed germination
GO:0001666 - response to hypoxia
GO:0009620 - response to fungus
GO:0009753 - response to jasmonic acid stimulus
GO:0009408 - response to heat
GO:0009629 - response to gravity
GO:0010189 - vitamin E biosynthetic process
GO:0009617 - response to bacterium
GO:0010200 - response to chitin
GO:0009646 - response to absence of light
GO:0009751 - response to salicylic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0003700 - transcription factor activity
GO:0006952 - defense response
GO:0009409 - response to cold
GO:0002213 - defense response to insect
GO:0080027 - response to herbivore
GO:0050832 - defense response to fungus
GO:0009413 - response to flooding
GO:0043565 - sequence-specific DNA binding
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0002237 - response to molecule of bacterial origin
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0009611 - response to wounding
|
TO:0006001 - salt tolerance
TO:0000454 - stem borer resistance
TO:0000259 - heat tolerance
TO:0000015 - oxygen sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0000255 - sheath blight disease resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000074 - blast disease
TO:0000460 - light intensity sensitivity
TO:0000524 - submergence tolerance
TO:0000303 - cold tolerance
TO:0002693 - gravity response trait
TO:0000424 - brown planthopper resistance
TO:0000432 - temperature response trait
|
PO:0020104 - leaf sheath
PO:0020039 - leaf lamina
PO:0007057 - 0 seed germination stage
PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0007045 - coleoptile emergence stage
|
Os01g0826400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g61080.1
|
|
|
WRKY50
|
OsWRKY50
|
WRKY GENE 50
|
Rice WRKY gene50
|
11
|
Character as QTL - Germination
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
|
GO:0002213 - defense response to insect
GO:0003700 - transcription factor activity
GO:0042742 - defense response to bacterium
GO:0006952 - defense response
GO:0043565 - sequence-specific DNA binding
GO:0009845 - seed germination
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
|
TO:0006001 - salt tolerance
TO:0000205 - white-backed planthopper resistance
TO:0000175 - bacterial blight disease resistance
TO:0000615 - abscisic acid sensitivity
|
PO:0007057 - 0 seed germination stage
|
Os11g0117600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os11g02540.1
|
|
|
WRKY55
|
OsWRKY55
|
WRKY GENE 55
|
Rice WRKY gene55
|
3
|
Character as QTL - Germination
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
|
GO:0002238 - response to molecule of fungal origin
GO:0010200 - response to chitin
GO:0009734 - auxin mediated signaling pathway
GO:0005634 - nucleus
GO:0050832 - defense response to fungus
GO:0009845 - seed germination
GO:0009413 - response to flooding
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0031347 - regulation of defense response
GO:0009629 - response to gravity
GO:0003700 - transcription factor activity
GO:0042742 - defense response to bacterium
GO:0006952 - defense response
GO:0034059 - response to anoxia
GO:0043565 - sequence-specific DNA binding
GO:0009737 - response to abscisic acid stimulus
GO:0016049 - cell growth
GO:0009414 - response to water deprivation
|
TO:0000074 - blast disease
TO:0000255 - sheath blight disease resistance
TO:0000207 - plant height
TO:0000276 - drought tolerance
TO:0000605 - hydrogen peroxide content
TO:0000129 - false smut disease resistance
TO:0000615 - abscisic acid sensitivity
TO:0000524 - submergence tolerance
TO:0000175 - bacterial blight disease resistance
TO:0000145 - internode length
TO:0002693 - gravity response trait
|
PO:0007057 - 0 seed germination stage
PO:0009049 - inflorescence
PO:0007045 - coleoptile emergence stage
PO:0020103 - flag leaf
PO:0020104 - leaf sheath
PO:0009005 - root
|
Os03g0321700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g20550.3
LOC_Os03g20550.2
LOC_Os03g20550.1
|
|
|
WRKY70
|
OsWRKY70
|
WRKY GENE 70
|
Rice WRKY gene70
|
5
|
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Character as QTL - Germination
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
|
GO:0006952 - defense response
GO:0009617 - response to bacterium
GO:0009413 - response to flooding
GO:0002221 - pattern recognition receptor signaling pathway
GO:0009845 - seed germination
GO:0009620 - response to fungus
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0000165 - MAPKKK cascade
GO:0002679 - respiratory burst during defense response
GO:0009646 - response to absence of light
GO:0009409 - response to cold
GO:0010200 - response to chitin
GO:0006979 - response to oxidative stress
GO:0005634 - nucleus
GO:0009739 - response to gibberellin stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009751 - response to salicylic acid stimulus
GO:0009629 - response to gravity
GO:0043565 - sequence-specific DNA binding
GO:0042742 - defense response to bacterium
GO:0002237 - response to molecule of bacterial origin
GO:0002213 - defense response to insect
GO:0080027 - response to herbivore
GO:0003700 - transcription factor activity
GO:0050832 - defense response to fungus
GO:0009867 - jasmonic acid mediated signaling pathway
|
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000255 - sheath blight disease resistance
TO:0000524 - submergence tolerance
TO:0002693 - gravity response trait
TO:0000166 - gibberellic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000424 - brown planthopper resistance
TO:0000382 - 1000-seed weight
TO:0000074 - blast disease
TO:0000172 - jasmonic acid sensitivity
TO:0000276 - drought tolerance
TO:0002668 - jasmonic acid content
TO:0000261 - insect damage resistance
TO:0000315 - bacterial disease resistance
TO:0000734 - grain length
TO:0000175 - bacterial blight disease resistance
TO:0000454 - stem borer resistance
TO:0000273 - armyworm resistance
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0000460 - light intensity sensitivity
TO:0002730 - grain shape
|
PO:0007045 - coleoptile emergence stage
PO:0009049 - inflorescence
PO:0020104 - leaf sheath
PO:0007057 - 0 seed germination stage
PO:0009005 - root
|
Os05g0474800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g39720.1
|
|
|
WRKY74
|
OsWRKY74
|
WRKY GENE 74
|
Rice WRKY gene74
|
9
|
Vegetative organ - Culm
Character as QTL - Yield and productivity
Character as QTL - Germination
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
|
GO:0009408 - response to heat
GO:0043565 - sequence-specific DNA binding
GO:0005634 - nucleus
GO:0006995 - cellular response to nitrogen starvation
GO:0010106 - cellular response to iron ion starvation
GO:0009409 - response to cold
GO:0016036 - cellular response to phosphate starvation
GO:0006952 - defense response
GO:0042742 - defense response to bacterium
GO:0003700 - transcription factor activity
GO:0009629 - response to gravity
GO:0009413 - response to flooding
GO:0009845 - seed germination
|
TO:0000043 - root anatomy and morphology trait
TO:0000346 - tiller number
TO:0000524 - submergence tolerance
TO:0002693 - gravity response trait
TO:0000396 - grain yield
TO:0000175 - bacterial blight disease resistance
TO:0000011 - nitrogen sensitivity
TO:0000224 - iron sensitivity
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
|
PO:0025034 - leaf
PO:0009005 - root
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os09g0334500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g16510.1
|
|
|
WRKY8
|
OsWRKY8
|
WRKY GENE 8
|
Rice WRKY gene8
|
5
|
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
|
GO:0009629 - response to gravity
GO:0009845 - seed germination
GO:0009413 - response to flooding
GO:0003700 - transcription factor activity
GO:0006952 - defense response
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009737 - response to abscisic acid stimulus
GO:0042742 - defense response to bacterium
GO:0030912 - response to deep water
GO:0043565 - sequence-specific DNA binding
|
TO:0000175 - bacterial blight disease resistance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0002693 - gravity response trait
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
TO:0000259 - heat tolerance
TO:0000524 - submergence tolerance
|
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os05g0583000
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g50610.1
LOC_Os05g50610.2
|
|
|
AMY3E
|
Amy3D/E*(RAmy3D/E)
alpha Amy8
alphaAmy8
AmyII-3
AMY1.4
Amy3E
Amy3D/E*
RAmy3D/E
Amy9
RAmy3E
alphaAmy8-C
AMY3E/AMY1.4
OsAmy3E
OsRamy3E
RAmy3E
|
ALPHA-AMYLASE 3E
|
Alpha-amylase3E
Alpha-amylase isozyme 3E precursor
Alpha-amylase isozyme 3E
Alpha-amylase-3E
Amylase-9
Alpha-amylase-3D
|
8
|
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Vegetative organ - Culm
Biochemical character
Character as QTL - Germination
|
GO:0009737 - response to abscisic acid stimulus
GO:0005987 - sucrose catabolic process
GO:0010182 - sugar mediated signaling
GO:0010212 - response to ionizing radiation
GO:0009651 - response to salt stress
GO:0001666 - response to hypoxia
GO:0009270 - response to humidity
GO:0009408 - response to heat
GO:0009739 - response to gibberellin stimulus
GO:0009409 - response to cold
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0051775 - response to redox state
GO:0080006 - internode patterning
GO:0004556 - alpha-amylase activity
GO:0005509 - calcium ion binding
GO:0005975 - carbohydrate metabolic process
GO:0009845 - seed germination
GO:0005983 - starch catabolic process
|
TO:0000161 - radiation response trait
TO:0000166 - gibberellic acid sensitivity
TO:0000259 - heat tolerance
TO:0000266 - chalky endosperm
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000441 - humidity related trait
TO:0006001 - salt tolerance
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
TO:0000345 - seed viability
TO:0000015 - oxygen sensitivity
TO:0010001 - percent germination
TO:0000544 - mesocotyl length
|
PO:0007057 - 0 seed germination stage
PO:0001170 - seed development stage
PO:0009010 - seed
|
Os08g0473600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g36900.1
LOC_Os08g36900.2
|
|
|
SUB1B
|
Sub1B
OsSUB1B
OsERF#063
OsERF063
ERF063
OsERF63
ERF63
AP2/EREBP#166
AP2/EREBP166
|
SUBMERGENCE 1B
|
submergence-1B
ethylene response factor 63
APETALA2/ethylene-responsive element binding protein 166
|
9
|
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
|
GO:0009629 - response to gravity
GO:0009845 - seed germination
GO:0001666 - response to hypoxia
GO:0030912 - response to deep water
GO:0005634 - nucleus
GO:0003677 - DNA binding
GO:0009723 - response to ethylene stimulus
GO:0003700 - transcription factor activity
GO:0009413 - response to flooding
GO:0009266 - response to temperature stimulus
|
TO:0000524 - submergence tolerance
TO:0000432 - temperature response trait
TO:0000173 - ethylene sensitivity
TO:0002693 - gravity response trait
|
PO:0007045 - coleoptile emergence stage
PO:0007057 - 0 seed germination stage
|
Os09g0287000
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g11480.1
LOC_Os09g11480.2
|
|
|
LCG1
|
SLRL2
OsSLRL2
OsGRAS-30
OsGRAS30
GRAS-30
GRAS30
OsLCG1
|
LESS CHALK GRAIN 1
|
SLR1-like2
GRAS protein 30
SLENDER RICE LIKE 2
Less Chalk Grain1
|
5
|
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Physiological traits - Taste
Vegetative organ - Culm
Other
|
GO:0010162 - seed dormancy
GO:0009740 - gibberellic acid mediated signaling
GO:0006350 - transcription
GO:0009738 - abscisic acid mediated signaling
GO:0010029 - regulation of seed germination
GO:0046890 - regulation of lipid biosynthetic process
GO:0010581 - regulation of starch biosynthetic process
GO:0032885 - regulation of polysaccharide biosynthetic process
GO:0016020 - membrane
GO:0045449 - regulation of transcription
GO:0009737 - response to abscisic acid stimulus
GO:0010468 - regulation of gene expression
GO:0005634 - nucleus
GO:0003677 - DNA binding
GO:0048623 - seed germination on parent plant
GO:0050832 - defense response to fungus
|
TO:0000162 - seed quality
TO:0002653 - endosperm storage protein content
TO:0000615 - abscisic acid sensitivity
TO:0002694 - fruit flavor trait
TO:0000074 - blast disease
TO:0000097 - amylopectin content
TO:0002758 - flag leaf lamina width
TO:0000196 - amylose content
TO:0000207 - plant height
TO:0000211 - gel consistency
TO:0000412 - setback viscosity
TO:0000696 - starch content
TO:0000266 - chalky endosperm
TO:0000253 - seed dormancy
TO:0000409 - peak viscosity
TO:0000619 - vivipary
TO:0002656 - starch grain shape
TO:0002658 - starch grain synthesis
TO:0000374 - breakdown viscosity
TO:0000557 - secondary branch number
TO:0000604 - fat and essential oil content
|
PO:0009010 - seed
PO:0001170 - seed development stage
PO:0009084 - pericarp
|
Os05g0574900
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g49930.1
|
|
|
SLRL1
|
OsSLRL1
OsGAI
OsSLRL
OsGRAS-1
OsGRAS1
GAI
SLRL
GRAS-1
GRAS1
|
SLENDER RICE LIKE 1
|
SLR1-like1
GRAS protein 1
|
1
|
Tolerance and resistance - Disease resistance
Other
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
|
GO:0009753 - response to jasmonic acid stimulus
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0042742 - defense response to bacterium
GO:0009740 - gibberellic acid mediated signaling
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0009938 - negative regulation of gibberellic acid mediated signaling
GO:0010468 - regulation of gene expression
GO:0045449 - regulation of transcription
GO:0009413 - response to flooding
GO:0009739 - response to gibberellin stimulus
GO:0080006 - internode patterning
GO:0050832 - defense response to fungus
|
TO:0000172 - jasmonic acid sensitivity
TO:0000255 - sheath blight disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0000286 - submergence sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000544 - mesocotyl length
|
|
Os01g0646300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g45860.1
|
|
|
BZR1
|
OsBZR1
Os BZR1
OsBES1-6
BES1-6
|
BRASSINAZOLE RESISTANT 1
|
BRASSINAZOLE-RESISTANT1
BRI1-EMSSUPPRESSOR1-6
BRI1-EMSSUPPRESSOR 1-6
|
7
|
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Reproductive organ - panicle
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Character as QTL - Grain quality
Character as QTL - Germination
|
GO:0009409 - response to cold
GO:0006970 - response to osmotic stress
GO:0009414 - response to water deprivation
GO:0009408 - response to heat
GO:0009651 - response to salt stress
GO:0043565 - sequence-specific DNA binding
GO:0009753 - response to jasmonic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0040008 - regulation of growth
GO:0009737 - response to abscisic acid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0051607 - defense response to virus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0009755 - hormone-mediated signaling
GO:0016020 - membrane
GO:0009809 - lignin biosynthetic process
GO:0031347 - regulation of defense response
GO:0042594 - response to starvation
GO:0009716 - flavonoid phytoalexin biosynthetic process
GO:0050832 - defense response to fungus
GO:0031349 - positive regulation of defense response
GO:0010268 - brassinosteroid homeostasis
GO:0052315 - phytoalexin biosynthetic process
GO:0009741 - response to brassinosteroid stimulus
GO:0016036 - cellular response to phosphate starvation
GO:0045454 - cell redox homeostasis
GO:0006351 - transcription, DNA-dependent
GO:0005737 - cytoplasm
GO:0009269 - response to desiccation
GO:0003677 - DNA binding
GO:0005773 - vacuole
GO:0009963 - positive regulation of flavonoid biosynthetic process
GO:0080006 - internode patterning
|
TO:0000733 - lignin biosynthesis trait
TO:0000731 - lignin content
TO:0000411 - seed length to width ratio
TO:0000590 - grain weight
TO:0000166 - gibberellic acid sensitivity
TO:0000040 - panicle length
TO:0000206 - leaf angle
TO:0000357 - growth and development trait
TO:0002677 - brassinosteroid sensitivity
TO:0000095 - osmotic response sensitivity
TO:0000440 - grain number per plant
TO:0000259 - heat tolerance
TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000346 - tiller number
TO:0000266 - chalky endosperm
TO:0000276 - drought tolerance
TO:0000074 - blast disease
TO:0000734 - grain length
TO:0000162 - seed quality
TO:0000449 - grain yield per plant
TO:0000102 - phosphorus sensitivity
TO:0000544 - mesocotyl length
TO:0000507 - osmotic adjustment capacity
TO:0000020 - black streak dwarf virus resistance
TO:0000382 - 1000-seed weight
TO:0000329 - tillering ability
TO:0002653 - endosperm storage protein content
TO:0000211 - gel consistency
TO:0000396 - grain yield
TO:0000134 - alkali digestion
TO:0000397 - grain size
TO:0000196 - amylose content
TO:0000303 - cold tolerance
TO:0000604 - fat and essential oil content
TO:0000207 - plant height
TO:0002688 - leaf lamina joint bending
TO:0000172 - jasmonic acid sensitivity
|
PO:0007010 - whole plant fruit ripening stage
PO:0007073 - 2 formation of axillary shoot stage
PO:0025034 - leaf
PO:0007089 - stem elongation stage
PO:0007014 - booting stage
PO:0007041 - inflorescence emergence stage
PO:0000034 - vascular system
PO:0007042 - whole plant fruit formation stage
PO:0007616 - flowering stage
PO:0000055 - bud
|
Os07g0580500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os07g39220.1
|
|
|
APX2
|
OsAPX2
OsAPx02
APXb
OsAPx2
OSAPX2
APx2
cAPX
OsAPX1
APX1
|
L-ASCORBATE PEROXIDASE 2
|
"L-ascorbate peroxidase 2
cytosolic"
ascorbate peroxidase 2
ascorbate peroxidase b
|
7
|
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Biochemical character
|
GO:0009725 - response to hormone stimulus
GO:0046685 - response to arsenic
GO:0005509 - calcium ion binding
GO:0010446 - response to alkalinity
GO:0009651 - response to salt stress
GO:0016688 - L-ascorbate peroxidase activity
GO:0010332 - response to gamma radiation
GO:0070482 - response to oxygen levels
GO:0009409 - response to cold
GO:0046688 - response to copper ion
GO:0051775 - response to redox state
GO:0006979 - response to oxidative stress
GO:0010310 - regulation of hydrogen peroxide metabolic process
GO:0042742 - defense response to bacterium
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0055114 - oxidation reduction
GO:0004601 - peroxidase activity
GO:0005737 - cytoplasm
GO:0006801 - superoxide metabolic process
GO:0042744 - hydrogen peroxide catabolic process
GO:0009414 - response to water deprivation
GO:0009742 - brassinosteroid mediated signaling
GO:0005829 - cytosol
GO:0009739 - response to gibberellin stimulus
GO:0009416 - response to light stimulus
GO:0042542 - response to hydrogen peroxide
GO:0009737 - response to abscisic acid stimulus
GO:0020037 - heme binding
GO:0030955 - potassium ion binding
GO:0009408 - response to heat
|
TO:0000303 - cold tolerance
TO:0002677 - brassinosteroid sensitivity
TO:0000481 - alkali sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000021 - copper sensitivity
TO:0002657 - oxidative stress
TO:0000615 - abscisic acid sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000075 - light sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0000015 - oxygen sensitivity
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
|
PO:0009006 - shoot system
PO:0007022 - seed imbibition stage
PO:0007057 - 0 seed germination stage
|
Os07g0694700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os07g49400.1
LOC_Os07g49400.2
LOC_Os07g49400.4
LOC_Os07g49400.3
|
|
|
ABA8OX1
|
OsABA8OX1
CYP707A5
OsCYP707A5
ABA8ox1
OsABA8ox1
OsABA8'OH1
ABA8'OH1
|
ABA-8'-HYDROXYLASE 1
|
Abscisic acid 8'-hydroxylase 1
ABA 8'-hydroxylase 1 ; Cytochrome P450 707A5
ABA 8'-hydroxylase1
|
2
|
Biochemical character
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
|
GO:0010167 - response to nitrate
GO:0009651 - response to salt stress
GO:0007263 - nitric oxide mediated signal transduction
GO:0009414 - response to water deprivation
GO:0046345 - abscisic acid catabolic process
GO:0055114 - oxidation reduction
GO:0032940 - secretion by cell
GO:0005783 - endoplasmic reticulum
GO:0009055 - electron carrier activity
GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity
GO:0016021 - integral to membrane
GO:0030912 - response to deep water
GO:0020037 - heme binding
GO:0009409 - response to cold
GO:0006950 - response to stress
GO:0009737 - response to abscisic acid stimulus
GO:0016491 - oxidoreductase activity
GO:0022900 - electron transport chain
GO:0042742 - defense response to bacterium
GO:0009408 - response to heat
GO:0009845 - seed germination
GO:0010029 - regulation of seed germination
GO:0009413 - response to flooding
|
TO:0000478 - abscisic acid concentration
TO:0000276 - drought tolerance
TO:0000175 - bacterial blight disease resistance
TO:0000259 - heat tolerance
TO:0002667 - abscisic acid content
TO:0000524 - submergence tolerance
TO:0000103 - deepwater stress
TO:0000430 - germination rate
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000286 - submergence sensitivity
TO:0006001 - salt tolerance
|
PO:0007045 - coleoptile emergence stage
PO:0009006 - shoot system
PO:0007057 - 0 seed germination stage
|
Os02g0703600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g47470.3
LOC_Os02g47470.2
LOC_Os02g47470.1
|
|
|
ABA8OX2
|
OsABA8OX2
OsABA8ox2
CYP707A6
OsCYP707A6
OsAba-ox2
OsABA8ox2
OsABA8OH2
ABA8OH2
ABA8'-OH2
OsABA8'ox2
ABA8'ox2
OsABAX2
ABAX2
OsABA8'OH2
ABA8'OH2
|
ABA-8'-HYDROXYLASE 2
|
Abscisic acid 8'-hydroxylase 2
ABA 8'-hydroxylase 2
Cytochrome P450 707A6
|
8
|
Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Dormancy
Character as QTL - Germination
|
GO:0046345 - abscisic acid catabolic process
GO:0009414 - response to water deprivation
GO:0009609 - response to symbiotic bacterium
GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity
GO:0016021 - integral to membrane
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0020037 - heme binding
GO:0055114 - oxidation reduction
GO:0009055 - electron carrier activity
GO:0009415 - response to water
GO:0009408 - response to heat
GO:0009845 - seed germination
GO:0009739 - response to gibberellin stimulus
|
TO:0000259 - heat tolerance
TO:0000031 - silicon sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
TO:0000237 - water stress trait
|
PO:0007057 - 0 seed germination stage
|
Os08g0472800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g36860.1
|
|
|
ABA8OX3
|
OsABA8OX3
OsABA8ox3
CYP707A7
OsCYP707A7
OsAba-ox3
OsABA8ox3
OsABA8'ox3
ABA8'ox3
OsABAX3
ABAX3
OsABA8'OH3
ABA8'OH3
|
ABA-8'-HYDROXYLASE 3
|
Abscisic acid 8'-hydroxylase 3
ABA 8'-hydroxylase 3
Cytochrome P450 707A7
|
9
|
Character as QTL - Germination
Tolerance and resistance - Disease resistance
Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
|
GO:0010353 - response to trehalose stimulus
GO:0010231 - maintenance of seed dormancy
GO:0010162 - seed dormancy
GO:0009413 - response to flooding
GO:0009055 - electron carrier activity
GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity
GO:0009845 - seed germination
GO:0009414 - response to water deprivation
GO:0016021 - integral to membrane
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0020037 - heme binding
GO:0046345 - abscisic acid catabolic process
GO:0055114 - oxidation reduction
GO:0051607 - defense response to virus
GO:0009408 - response to heat
GO:0060359 - response to ammonium ion
GO:0048364 - root development
|
TO:0000656 - root development trait
TO:0000276 - drought tolerance
TO:0002667 - abscisic acid content
TO:0000148 - viral disease resistance
TO:0000578 - root fresh weight
TO:0000524 - submergence tolerance
TO:0000020 - black streak dwarf virus resistance
TO:0000253 - seed dormancy
TO:0000516 - relative root length
TO:0000259 - heat tolerance
|
PO:0007057 - 0 seed germination stage
PO:0007520 - root development stage
PO:0007022 - seed imbibition stage
|
Os09g0457100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g28390.1
|
|
|
LA1
|
OsLa1
|
LAZY 1
|
OsLazy1
LAZY1
|
11
|
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Character as QTL - Germination
|
GO:0009413 - response to flooding
GO:0009845 - seed germination
GO:0009959 - negative gravitropism
GO:0009734 - auxin mediated signaling pathway
GO:0009630 - gravitropism
GO:0010031 - circumnutation
GO:0009629 - response to gravity
GO:0009590 - detection of gravity
GO:0009926 - auxin polar transport
|
TO:0000567 - tiller angle
TO:0000207 - plant height
TO:0002672 - auxin content
TO:0002693 - gravity response trait
TO:0000524 - submergence tolerance
|
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
|
Os11g0490600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os11g29840.1
|
|
|
NCED2
|
OSNCED2
OsNCED2
OsNCED5
NCED5
|
9-CIS-EPOXYCAROTENOID DIOXYGENASE 2
|
9-cis-epoxycarotenoid dioxygenase 2
|
12
|
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Biochemical character
Tolerance and resistance - Stress tolerance
|
GO:0009507 - chloroplast
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0009413 - response to flooding
GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity
GO:0001666 - response to hypoxia
GO:0009409 - response to cold
GO:0009845 - seed germination
GO:0009688 - abscisic acid biosynthetic process
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
|
TO:0000615 - abscisic acid sensitivity
TO:0000015 - oxygen sensitivity
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0000114 - flooding related trait
TO:0002667 - abscisic acid content
|
PO:0007616 - flowering stage
PO:0009010 - seed
PO:0007057 - 0 seed germination stage
|
Os12g0617400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os12g42280.1
|
|
Update info.
You can further refine your search from the results list.
