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CGSNL Gene Symbol	Gene symbol synonym(s)	CGSNL Gene Name	Gene name synonym(s)	Chr. No.	Trait Class	Gene Ontology	Trait Ontology	Plant Ontology	RAP ID	MSU ID
GH3-8	OsGH3-8 OsMGH3 OsGH3.8 GH3.8 OsGH3-2	GRETCHEN HAGEN 3 GENE 8	Gretchen Hagen 3 protein 8	7	Vegetative organ - Culm Reproductive organ - Spikelet, flower, glume, awn Tolerance and resistance - Disease resistance Biochemical character Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity	GO:0009863 - salicylic acid mediated signaling pathway GO:0009867 - jasmonic acid mediated signaling pathway GO:0009852 - auxin catabolic process GO:0006955 - immune response GO:0010279 - indole-3-acetic acid amido synthetase activity GO:0016874 - ligase activity GO:0009651 - response to salt stress GO:0051607 - defense response to virus GO:0009908 - flower development	TO:0000172 - jasmonic acid sensitivity TO:0000207 - plant height TO:0000622 - flower development trait TO:0000401 - plant growth hormone sensitivity TO:0000346 - tiller number TO:0006001 - salt tolerance TO:0000020 - black streak dwarf virus resistance TO:0002672 - auxin content	PO:0009066 - anther PO:0005052 - plant callus PO:0008037 - seedling PO:0009010 - seed PO:0009049 - inflorescence PO:0007615 - flower development stage	Os07g0592600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g40290.1
NH1	OsNH1 OsNPR1 OsNPR1/NH1 NPR1 OsPR2 PR2 DLN5 OsDLN5 OsBTBA1 BTBA1	NPR1 HOMOLOG 1	NPR1-like 1 NPR1 homologue 1 nonexpresser of PR genes 1 Arabidopsis NPR1 homolog 1 non-expressor of pathogenesis-related gene 1 Arabidopsis NPR1 homologue 1 pathogenesis-related gene 2 nonexpressor of PR genes 1 Nonexpressor of Pathogenesis-Related Genes1 NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1 NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 non-expressor pathogenesis-related 1 NONEXPRESSOR OF PR1 DLN repressor 5 DLN motif protein 5 BTB-type E3 ubiquitin ligase A1	1	Tolerance and resistance - Insect resistance Vegetative organ - Culm Tolerance and resistance - Lesion mimic Character as QTL - Yield and productivity Vegetative organ - Root Tolerance and resistance - Disease resistance Tolerance and resistance - Stress tolerance	GO:0010200 - response to chitin GO:0009734 - auxin mediated signaling pathway GO:0008219 - cell death GO:0051607 - defense response to virus GO:0005829 - cytosol GO:0009867 - jasmonic acid mediated signaling pathway GO:0009609 - response to symbiotic bacterium GO:0006952 - defense response GO:0048364 - root development GO:0010942 - positive regulation of cell death GO:0006950 - response to stress GO:0031348 - negative regulation of defense response GO:0045893 - positive regulation of transcription, DNA-dependent GO:0009625 - response to insect GO:0016563 - transcription activator activity GO:0009863 - salicylic acid mediated signaling pathway GO:0002237 - response to molecule of bacterial origin GO:0042742 - defense response to bacterium GO:0009737 - response to abscisic acid stimulus GO:0005634 - nucleus GO:0002213 - defense response to insect GO:0009814 - defense response, incompatible interaction GO:0002215 - defense response to nematode GO:0010112 - regulation of systemic acquired resistance GO:0050832 - defense response to fungus GO:0009682 - induced systemic resistance GO:0009408 - response to heat GO:0009611 - response to wounding GO:0009627 - systemic acquired resistance	TO:0000424 - brown planthopper resistance TO:0000172 - jasmonic acid sensitivity TO:0000346 - tiller number TO:0000255 - sheath blight disease resistance TO:0000074 - blast disease TO:0000181 - seed weight TO:0000207 - plant height TO:0000615 - abscisic acid sensitivity TO:0000112 - disease resistance TO:0000401 - plant growth hormone sensitivity TO:0000175 - bacterial blight disease resistance TO:0000384 - nematode damage resistance TO:0000656 - root development trait TO:0000445 - seed number TO:0000148 - viral disease resistance TO:0000163 - auxin sensitivity TO:0000063 - mimic response	PO:0007089 - stem elongation stage PO:0007520 - root development stage	Os01g0194300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g09800.1
CIPK01	OsCIPK01 CIPK1 OsCIPK1 OsSnRK3.3 SnRK3.3	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1	CBL-interacting protein kinase 1 Sucrose nonfermenting-1-related protein kinase 3.3	1	Seed - Morphological traits - Grain shape Tolerance and resistance - Stress tolerance Vegetative organ - Culm Biochemical character Character as QTL - Yield and productivity	GO:0009409 - response to cold GO:0004674 - protein serine/threonine kinase activity GO:0005524 - ATP binding GO:0004713 - protein tyrosine kinase activity GO:0030307 - positive regulation of cell growth GO:0009740 - gibberellic acid mediated signaling GO:0009413 - response to flooding GO:0009651 - response to salt stress GO:0030145 - manganese ion binding GO:0006468 - protein amino acid phosphorylation GO:0007165 - signal transduction GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance TO:0000382 - 1000-seed weight TO:0000432 - temperature response trait TO:0020033 - glume length TO:0020034 - glume width TO:0000734 - grain length TO:0000207 - plant height TO:0002675 - gibberellic acid content TO:0006001 - salt tolerance TO:0000276 - drought tolerance TO:0000396 - grain yield TO:0000391 - seed size TO:0000397 - grain size TO:0000590 - grain weight TO:0000114 - flooding related trait	PO:0025034 - leaf	Os01g0292200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g18800.3 LOC_Os01g18800.4 LOC_Os01g18800.1 LOC_Os01g18800.2 LOC_Os01g18800.5
CIPK02	OsCIPK02 CIPK2 OsCIPK2 OsSnRK3.26 SnRK3.26	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2	CBL-interacting protein kinase 2 Sucrose nonfermenting-1-related protein kinase 3.26	7	Biochemical character Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Vegetative organ - Root	GO:0015770 - sucrose transport GO:0034219 - carbohydrate transmembrane transport GO:0009409 - response to cold GO:0009737 - response to abscisic acid stimulus GO:0005524 - ATP binding GO:0042128 - nitrate assimilation GO:0044403 - symbiosis, encompassing mutualism through parasitism GO:0031667 - response to nutrient levels GO:0004674 - protein serine/threonine kinase activity GO:0006995 - cellular response to nitrogen starvation GO:0042594 - response to starvation GO:0019740 - nitrogen utilization GO:0006468 - protein amino acid phosphorylation GO:0007165 - signal transduction GO:0009651 - response to salt stress GO:0044136 - development of symbiont on or near host rhizosphere GO:0030145 - manganese ion binding	TO:0000371 - yield trait TO:0001027 - net photosynthetic rate TO:0000495 - chlorophyll content TO:0000644 - relative root dry weight TO:0000636 - relative shoot dry weight TO:0000455 - seed set percent TO:0000152 - panicle number TO:0006001 - salt tolerance TO:0000303 - cold tolerance TO:0000615 - abscisic acid sensitivity TO:0000291 - carbohydrate content TO:0000011 - nitrogen sensitivity TO:0000382 - 1000-seed weight TO:0000449 - grain yield per plant TO:0000128 - harvest index	PO:0009005 - root	Os07g0678600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g48100.1
MADS51	OsMADS51 OsMADS65 MADS65 qHd1 DLN36 OsDLN36	MADS BOX GENE 51	MADS box gene51 DLN repressor 36 DLN motif protein 36	1	Character as QTL - Yield and productivity Reproductive organ - Heading date Tolerance and resistance - Stress tolerance Seed - Morphological traits Character as QTL - Plant growth activity Other Tolerance and resistance - Disease resistance	GO:0003700 - transcription factor activity GO:0006350 - transcription GO:0005634 - nucleus GO:0006355 - regulation of transcription, DNA-dependent GO:0009408 - response to heat GO:0050832 - defense response to fungus GO:0009409 - response to cold GO:0043565 - sequence-specific DNA binding	TO:0000396 - grain yield TO:0000259 - heat tolerance TO:0000432 - temperature response trait TO:0000137 - days to heading TO:0002616 - flowering time TO:0000449 - grain yield per plant TO:0000152 - panicle number TO:0000455 - seed set percent TO:0000329 - tillering ability TO:0000357 - growth and development trait TO:0000074 - blast disease TO:0000590 - grain weight TO:0000303 - cold tolerance		Os01g0922800 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g69850.1
SDT	miR156h OsmiR156h osmiR156h osa-miR156h osa-MIR156hosa-miR156h-3p osa-miR156h-5p	SEMIDWARF AND HIGH-TILLERING	micro RNA 156h microRNA156h osa-miRNA156h semidwarf and high-tillering	6	Tolerance and resistance - Stress tolerance Other Character as QTL - Yield and productivity Vegetative organ - Culm Tolerance and resistance - Disease resistance	GO:0007623 - circadian rhythm GO:0050832 - defense response to fungus GO:0006379 - mRNA cleavage GO:0016442 - RNA-induced silencing complex GO:0035068 - micro-ribonucleoprotein complex GO:0035195 - gene silencing by miRNA	TO:0000050 - inflorescence branching TO:0000074 - blast disease TO:0000207 - plant height TO:0000329 - tillering ability TO:0000068 - lodging incidence TO:0000346 - tiller number TO:0000396 - grain yield	PO:0000009 - cultured plant callus PO:0009005 - root PO:0009025 - vascular leaf PO:0009049 - inflorescence	-
YUCCA1	OsYUCCA1 OsYUC1 YUC1	YUCCA-LIKE GENE 1	(YUCCA-like gene)	1	Tolerance and resistance - Disease resistance Vegetative organ - Root Character as QTL - Yield and productivity Biochemical character Tolerance and resistance - Stress tolerance	GO:0010229 - inflorescence development GO:0048364 - root development GO:0009609 - response to symbiotic bacterium GO:0051607 - defense response to virus GO:0034059 - response to anoxia GO:0009737 - response to abscisic acid stimulus GO:0004499 - flavin-containing monooxygenase activity GO:0009851 - auxin biosynthetic process GO:0046686 - response to cadmium ion GO:0046685 - response to arsenic GO:0048830 - adventitious root development GO:0009408 - response to heat GO:0009414 - response to water deprivation	TO:0000396 - grain yield TO:0000031 - silicon sensitivity TO:0000227 - root length TO:0000020 - black streak dwarf virus resistance TO:0000084 - root number TO:0000656 - root development trait TO:0000428 - callus induction TO:0000615 - abscisic acid sensitivity TO:0000447 - filled grain number TO:0000259 - heat tolerance TO:0000276 - drought tolerance TO:0002672 - auxin content TO:0000578 - root fresh weight TO:0000621 - inflorescence development trait TO:0001013 - lateral root number TO:0000557 - secondary branch number TO:0001006 - adventitious root number TO:0000449 - grain yield per plant	PO:0020103 - flag leaf PO:0009105 - inflorescence branch meristem	Os01g0645400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g45760.1 LOC_Os01g45760.2
RBOHB	rbohB OsrbohB Os rbohB OsRbohB OsNox1 Nox1 Os-RbohB RbohB OsRboh1 Rboh1	RESPIRATORY BURST OXIDASE HOMOLOG B	Respiratory Burst Oxidase Homolog B Respiratory Burst Oxidase Homologue B NADPH oxidase 1	1	Biochemical character Vegetative organ - Root Reproductive organ - Pollination, fertilization, fertility Character as QTL - Germination Tolerance and resistance - Disease resistance Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity	GO:0009687 - abscisic acid metabolic process GO:0010115 - regulation of abscisic acid biosynthetic process GO:0009751 - response to salicylic acid stimulus GO:0004601 - peroxidase activity GO:0005509 - calcium ion binding GO:0009408 - response to heat GO:0009734 - auxin mediated signaling pathway GO:0009845 - seed germination GO:0006952 - defense response GO:0009626 - plant-type hypersensitive response GO:0030104 - water homeostasis GO:0009651 - response to salt stress GO:0009414 - response to water deprivation GO:0002238 - response to molecule of fungal origin GO:0009753 - response to jasmonic acid stimulus GO:0005886 - plasma membrane GO:0010266 - response to vitamin B1 GO:0050832 - defense response to fungus GO:0009737 - response to abscisic acid stimulus GO:0043621 - protein self-association GO:0009733 - response to auxin stimulus GO:0050665 - hydrogen peroxide biosynthetic process GO:0006970 - response to osmotic stress GO:0009413 - response to flooding GO:0048364 - root development GO:0006979 - response to oxidative stress GO:0016174 - NAD(P)H oxidase activity GO:0002679 - respiratory burst during defense response GO:0009738 - abscisic acid mediated signaling GO:0016021 - integral to membrane GO:0009566 - fertilization GO:0010118 - stomatal movement GO:0043020 - NADPH oxidase complex GO:0042742 - defense response to bacterium	TO:0000112 - disease resistance TO:0000605 - hydrogen peroxide content TO:0000175 - bacterial blight disease resistance TO:0000656 - root development trait TO:0002657 - oxidative stress TO:0006002 - proline content TO:0000276 - drought tolerance TO:0000163 - auxin sensitivity TO:0000074 - blast disease TO:0000439 - fungal disease resistance TO:0000136 - relative water content TO:0000172 - jasmonic acid sensitivity TO:0000615 - abscisic acid sensitivity TO:0000524 - submergence tolerance TO:0006001 - salt tolerance TO:0002667 - abscisic acid content TO:0000095 - osmotic response sensitivity TO:0000129 - false smut disease resistance TO:0000520 - stomatal closure rate TO:0000430 - germination rate TO:0000382 - 1000-seed weight	PO:0025034 - leaf	Os01g0360200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g25820.2 LOC_Os01g25820.1
ESL4	CDPK12 OsCDPK12 OsCPK12 CPK12 OsESL4	EARLY SENESCENCE LEAF 4	calcium-dependent protein kinase Calcium-dependent protein kinase 12 Early senescence leaf 4	4	Biochemical character Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Tolerance and resistance Character as QTL - Plant growth activity Vegetative organ - Leaf	GO:0005634 - nucleus GO:0016020 - membrane GO:0009414 - response to water deprivation GO:0005509 - calcium ion binding GO:0005524 - ATP binding GO:0004674 - protein serine/threonine kinase activity GO:0031000 - response to caffeine GO:0005737 - cytoplasm GO:0005886 - plasma membrane GO:0009627 - systemic acquired resistance GO:0009697 - salicylic acid biosynthetic process GO:0006979 - response to oxidative stress GO:0018105 - peptidyl-serine phosphorylation GO:0010310 - regulation of hydrogen peroxide metabolic process GO:0006807 - nitrogen compound metabolic process GO:0010150 - leaf senescence	TO:0000371 - yield trait TO:0000495 - chlorophyll content TO:0000440 - grain number per plant TO:0000276 - drought tolerance TO:0000271 - inflorescence length TO:0000605 - hydrogen peroxide content TO:0002657 - oxidative stress TO:0000455 - seed set percent TO:0000249 - leaf senescence	PO:0007633 - endosperm development stage PO:0020104 - leaf sheath PO:0009047 - stem PO:0025034 - leaf	Os04g0560600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g47300.1
CATA	CATA1 Cat A1* OSCAT-A Cat2 CatA1 CAT-A OsCatA OsCAT CAT catA OSCATA OsCATc OsCATA OsCAT1A CAT1 OsCAT1 OsCATC OsCAT2	CATALASE A	CATALASE A Catalase-2* Catalase-Al (cDNA clone) Catalase isozyme A	2	Biochemical character Tolerance and resistance - Disease resistance Character as QTL - Germination Tolerance and resistance - Stress tolerance Character as QTL - Plant growth activity Character as QTL - Yield and productivity	GO:0009609 - response to symbiotic bacterium GO:0005634 - nucleus GO:0043067 - regulation of programmed cell death GO:0009737 - response to abscisic acid stimulus GO:0009514 - glyoxysome GO:0042542 - response to hydrogen peroxide GO:0006979 - response to oxidative stress GO:0009408 - response to heat GO:0009409 - response to cold GO:0004096 - catalase activity GO:0042744 - hydrogen peroxide catabolic process GO:0055114 - oxidation reduction GO:0042742 - defense response to bacterium GO:0010446 - response to alkalinity GO:0009845 - seed germination GO:0005737 - cytoplasm GO:0009725 - response to hormone stimulus GO:0009738 - abscisic acid mediated signaling GO:0009739 - response to gibberellin stimulus GO:0009651 - response to salt stress GO:0005829 - cytosol GO:0005777 - peroxisome GO:0006801 - superoxide metabolic process GO:0051775 - response to redox state GO:0020037 - heme binding GO:0009751 - response to salicylic acid stimulus GO:0010332 - response to gamma radiation GO:0009414 - response to water deprivation GO:0010372 - positive regulation of gibberellin biosynthetic process GO:0010029 - regulation of seed germination	TO:0000207 - plant height TO:0001016 - relative chlorophyll content TO:0000136 - relative water content TO:0000382 - 1000-seed weight TO:0000031 - silicon sensitivity TO:0000326 - leaf color TO:0000303 - cold tolerance TO:0000175 - bacterial blight disease resistance TO:0000259 - heat tolerance TO:0000166 - gibberellic acid sensitivity TO:0000455 - seed set percent TO:0000615 - abscisic acid sensitivity TO:0000152 - panicle number TO:0000276 - drought tolerance TO:0006001 - salt tolerance TO:0002657 - oxidative stress TO:0000401 - plant growth hormone sensitivity TO:0000481 - alkali sensitivity TO:0000605 - hydrogen peroxide content	PO:0009047 - stem PO:0009010 - seed PO:0009066 - anther PO:0007022 - seed imbibition stage PO:0007057 - 0 seed germination stage PO:0025034 - leaf	Os02g0115700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g02400.2 LOC_Os02g02400.3 LOC_Os02g02400.1
SSIIIB	OsSSIIIb. SSIII-1 SSIIIa	SOLUBLE STARCH SYNTHASE IIIB		4	Tolerance and resistance - Stress tolerance Character as QTL - Grain quality Character as QTL - Yield and productivity Biochemical character Seed - Physiological traits - Storage substances	GO:0009011 - starch synthase activity GO:0009501 - amyloplast GO:0019252 - starch biosynthetic process GO:0010229 - inflorescence development GO:0009507 - chloroplast GO:0009408 - response to heat	TO:0000396 - grain yield TO:0000259 - heat tolerance TO:0000604 - fat and essential oil content TO:0000196 - amylose content TO:0000382 - 1000-seed weight TO:0000621 - inflorescence development trait TO:0000696 - starch content	PO:0009010 - seed PO:0009072 - plant ovary PO:0009009 - plant embryo PO:0001083 - inflorescence development stage PO:0009089 - endosperm PO:0025034 - leaf PO:0009049 - inflorescence	Os04g0624600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g53310.1
NOE1	CATC OsCat OsCatC OsCATC OsNOE1 noe1 catC OsCATC CAT3 OsCAT3 LLM9428 OsLLM9428	NITRIC OXIDE EXCESS 1	catalase C catalase isozyme C nitric oxide excess1 large lesion mimic mutant 9428	3	Biochemical character Vegetative organ - Leaf Character as QTL - Plant growth activity Seed - Physiological traits - Shattering Tolerance and resistance - Disease resistance Vegetative organ - Culm Tolerance and resistance - Lesion mimic Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance	GO:0010939 - regulation of necrotic cell death GO:0009725 - response to hormone stimulus GO:0042744 - hydrogen peroxide catabolic process GO:0005982 - starch metabolic process GO:0009409 - response to cold GO:0050832 - defense response to fungus GO:0009414 - response to water deprivation GO:0009642 - response to light intensity GO:0033484 - nitric oxide homeostasis GO:0010229 - inflorescence development GO:0031348 - negative regulation of defense response GO:0042548 - regulation of photosynthesis, light reaction GO:0005634 - nucleus GO:0004096 - catalase activity GO:0006979 - response to oxidative stress GO:0042742 - defense response to bacterium GO:0020037 - heme binding GO:0009404 - toxin metabolic process GO:0043067 - regulation of programmed cell death GO:0009651 - response to salt stress GO:0005739 - mitochondrion GO:0006801 - superoxide metabolic process GO:0010150 - leaf senescence GO:0050777 - negative regulation of immune response GO:0009737 - response to abscisic acid stimulus GO:0009408 - response to heat GO:0005777 - peroxisome GO:0045454 - cell redox homeostasis GO:0009416 - response to light stimulus	TO:0000346 - tiller number TO:0000207 - plant height TO:0000074 - blast disease TO:0000382 - 1000-seed weight TO:0000175 - bacterial blight disease resistance TO:0000303 - cold tolerance TO:0000249 - leaf senescence TO:0006001 - salt tolerance TO:0000259 - heat tolerance TO:0002657 - oxidative stress TO:0000605 - hydrogen peroxide content TO:0000063 - mimic response TO:0000455 - seed set percent TO:0000326 - leaf color TO:0000019 - seedling height TO:0002637 - leaf size TO:0000460 - light intensity sensitivity TO:0000075 - light sensitivity TO:0000357 - growth and development trait TO:0002662 - leaf rolling tolerance TO:0000621 - inflorescence development trait TO:0000276 - drought tolerance TO:0000473 - grain shattering TO:0000615 - abscisic acid sensitivity TO:0000152 - panicle number TO:0000401 - plant growth hormone sensitivity TO:0000447 - filled grain number	PO:0001054 - 4 leaf senescence stage PO:0025034 - leaf PO:0009047 - stem PO:0020104 - leaf sheath PO:0001083 - inflorescence development stage	Os03g0131200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g03910.1
GHD7	Ghd2 Ghd7 OsGhd7 OsCCT26 OsCMF8 OsI Ghd7/Hd4 Hd4 EH7-1/Hd4 Ghd7-0a EH7-1 EH7/Ghd7 EH7 OsEH7 GLW7.1 OsGLW7.1	HEADING DATE 7	heading date 7 "Grain number plant height and heading date7" "GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7" CCT domain-containing gene 26 CCT (CO, CO-LIKE and TOC1) domain protein 26 CCT domain protein 26 CCT MOTIF FAMILY (CMF) gene 8 Early heading 7 "Grain Length Width and Weight 7.1" Grain height date 7	7	Character as QTL - Yield and productivity Reproductive organ - Heading date Reproductive organ - Spikelet, flower, glume, awn Seed - Morphological traits - Grain shape Character as QTL - Plant growth activity Character as QTL - Grain quality Heterochrony Seed - Physiological traits Vegetative organ - Culm Seed - Physiological traits - Storage substances Seed - Physiological traits - Taste	GO:0051171 - regulation of nitrogen compound metabolic process GO:0009648 - photoperiodism GO:0005985 - sucrose metabolic process GO:0042128 - nitrate assimilation GO:0010372 - positive regulation of gibberellin biosynthetic process GO:0045848 - positive regulation of nitrogen utilization GO:0006521 - regulation of cellular amino acid metabolic process GO:0048579 - negative regulation of long-day photoperiodism, flowering GO:0008643 - carbohydrate transport GO:0048573 - photoperiodism, flowering GO:0051781 - positive regulation of cell division GO:0009416 - response to light stimulus GO:0009740 - gibberellic acid mediated signaling GO:0010229 - inflorescence development GO:0007623 - circadian rhythm GO:0030307 - positive regulation of cell growth GO:0006109 - regulation of carbohydrate metabolic process GO:0015770 - sucrose transport GO:0006808 - regulation of nitrogen utilization GO:0045892 - negative regulation of transcription, DNA-dependent GO:0010109 - regulation of photosynthesis GO:0009744 - response to sucrose stimulus GO:0009745 - sucrose mediated signaling	TO:0000621 - inflorescence development trait TO:0000397 - grain size TO:0000382 - 1000-seed weight TO:0000734 - grain length TO:0002653 - endosperm storage protein content TO:0000590 - grain weight TO:0002675 - gibberellic acid content TO:0000266 - chalky endosperm TO:0000469 - days to maturity TO:0000456 - spikelet number TO:0000229 - photoperiod sensitivity TO:0000207 - plant height TO:0000447 - filled grain number TO:0000557 - secondary branch number TO:0000050 - inflorescence branching TO:0002759 - grain number TO:0000011 - nitrogen sensitivity TO:0000196 - amylose content TO:0000396 - grain yield TO:0000162 - seed quality TO:0000152 - panicle number TO:0000696 - starch content TO:0000107 - endosperm storage protein-1 content TO:0000109 - endosperm storage protein-2 content TO:0000137 - days to heading TO:0000019 - seedling height TO:0000211 - gel consistency TO:0002616 - flowering time TO:0000710 - globulin protein content TO:0000449 - grain yield per plant TO:0000352 - plant dry weight TO:0002680 - albumin content TO:0000357 - growth and development trait	PO:0001083 - inflorescence development stage	Os07g0261200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g15770.1
GIF1	gif1 CIN2 OsCIN2 OsGIF1 WB1 OsWB1 GIF1/OsCIN2	GRAIN INCOMPLETE FILLING 1	grain incomplete filling 1 "Beta-fructofuranosidase insoluble isoenzyme 2" Sucrose hydrolase 2 Invertase 2 Cell wall beta-fructosidase 2 cell-wall invertase 2 White Belly 1	4	Seed - Morphological traits Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Seed - Physiological traits - Taste Seed - Physiological traits - Storage substances Character as QTL - Grain quality Seed - Morphological traits - Endosperm	GO:0005987 - sucrose catabolic process GO:0016787 - hydrolase activity GO:0048046 - apoplast GO:0051707 - response to other organism GO:0016023 - cytoplasmic membrane-bounded vesicle GO:0005986 - sucrose biosynthetic process GO:0004564 - beta-fructofuranosidase activity GO:0004575 - sucrose alpha-glucosidase activity GO:0005618 - cell wall GO:0005975 - carbohydrate metabolic process GO:0009960 - endosperm development	TO:0000696 - starch content TO:0000734 - grain length TO:0000097 - amylopectin content TO:0000382 - 1000-seed weight TO:0000447 - filled grain number TO:0000456 - spikelet number TO:0000328 - sucrose content TO:0000391 - seed size TO:0000455 - seed set percent TO:0000300 - glucose content TO:0000311 - invertase activity TO:0000221 - glume color TO:0002656 - starch grain shape TO:0000146 - seed length TO:0000149 - seed width TO:0000304 - seed thickness TO:0000162 - seed quality TO:0000396 - grain yield TO:0000397 - grain size TO:0006005 - fructose content TO:0000592 - 1000-dehulled grain weight TO:0000196 - amylose content TO:0000590 - grain weight TO:0002661 - seed maturation TO:0000266 - chalky endosperm TO:0000575 - endosperm related trait TO:0000487 - endosperm color	PO:0005019 - carpel vascular system PO:0009089 - endosperm PO:0009084 - pericarp PO:0007633 - endosperm development stage PO:0006326 - inflorescence internode PO:0000025 - root tip	Os04g0413500 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g33740.1
SPL17	OsCAD1 CAD1	SPOTTED LEAF 17	spotted leaf 17 CONSTITUTIVE ACTIVE DEFENSE 1	1	Tolerance and resistance - Lesion mimic Character as QTL - Plant growth activity Character as QTL - Yield and productivity Tolerance and resistance - Disease resistance	GO:0016020 - membrane GO:0005634 - nucleus GO:0009863 - salicylic acid mediated signaling pathway GO:0042742 - defense response to bacterium GO:0031347 - regulation of defense response GO:0009416 - response to light stimulus GO:0009867 - jasmonic acid mediated signaling pathway GO:0050832 - defense response to fungus GO:0043067 - regulation of programmed cell death GO:0005829 - cytosol GO:0009626 - plant-type hypersensitive response GO:0006952 - defense response	TO:0000074 - blast disease TO:0002668 - jasmonic acid content TO:0000605 - hydrogen peroxide content TO:0000382 - 1000-seed weight TO:0000207 - plant height TO:0000357 - growth and development trait TO:0000063 - mimic response TO:0000075 - light sensitivity TO:0000175 - bacterial blight disease resistance TO:0000455 - seed set percent	PO:0025034 - leaf	Os01g0748900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g54510.1
SAMDC	SamDC AdoMetDC AdoMetDC1 OsSAMDC1	S-ADENOSYLMETHIONINE DECARBOXYLASE	S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase proenzyme S-adenosylmethionine decarboxylase alpha chain S-adenosylmethionine decarboxylase beta chain S-adenosylmethionine decarboxylase 1	4	Biochemical character Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Vegetative organ - Culm	GO:0009846 - pollen germination GO:0009414 - response to water deprivation GO:0004014 - adenosylmethionine decarboxylase activity GO:0006597 - spermine biosynthetic process GO:0008295 - spermidine biosynthetic process GO:0009409 - response to cold GO:0009555 - pollen development GO:0009651 - response to salt stress GO:0009845 - seed germination GO:0016209 - antioxidant activity GO:0006596 - polyamine biosynthetic process	TO:0000207 - plant height TO:0000346 - tiller number TO:0000432 - temperature response trait TO:0000276 - drought tolerance TO:0000430 - germination rate TO:0000449 - grain yield per plant TO:0000303 - cold tolerance TO:0006001 - salt tolerance TO:0000421 - pollen fertility		Os04g0498600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g42090.1 LOC_Os04g42090.2 LOC_Os04g42090.3 LOC_Os04g42090.4 LOC_Os04g42090.5 LOC_Os04g42095.1
RF2B	RF2b OsRF2B OsbZIP30 bZIP30	bZIP TRANSCRIPTION FACTOR RF2B	Transcription factor RF2b bZIP transcription factor 30	3	Other Character as QTL - Yield and productivity Character as QTL - Plant growth activity	GO:0045847 - negative regulation of nitrogen utilization GO:0010167 - response to nitrate GO:0045892 - negative regulation of transcription, DNA-dependent GO:0042128 - nitrate assimilation GO:0046983 - protein dimerization activity GO:0003700 - transcription factor activity GO:0005634 - nucleus GO:0006355 - regulation of transcription, DNA-dependent GO:0006350 - transcription GO:0043565 - sequence-specific DNA binding	TO:0000397 - grain size TO:0000357 - growth and development trait TO:0000396 - grain yield TO:0000011 - nitrogen sensitivity TO:0000382 - 1000-seed weight TO:0000402 - grain width TO:0000449 - grain yield per plant TO:0000734 - grain length TO:0000040 - panicle length TO:0000207 - plant height	PO:0009005 - root PO:0009051 - spikelet	Os03g0336200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g21800.1 LOC_Os03g21800.2
RL9	rl9 SLL1/RL9 SLL1 OsSLL1 OsADD1 ADD1 AH2 OsAH2 CL1 OsCL1 OsKAN1 KAN1	ROLLED LEAF 9	SHALLOT-LIKE1 SHALLOT-LIKE 1 ROLLED LEAF9 anther dehiscence defected 1 abnormal hull 2 curling leaf 1 KANADI1 OsKANADI1	9	Coloration - Chlorophyll Other Character as QTL - Plant growth activity Vegetative organ - Leaf Seed - Morphological traits - Grain shape Reproductive organ - Inflorescence Vegetative organ - Root Reproductive organ - Spikelet, flower, glume, awn Character as QTL - Grain quality Character as QTL - Yield and productivity Reproductive organ - panicle Seed - Morphological traits Vegetative organ - Culm	GO:0009685 - gibberellin metabolic process GO:0045487 - gibberellin catabolic process GO:0006351 - transcription, DNA-dependent GO:0009739 - response to gibberellin stimulus GO:0009957 - epidermal cell fate specification GO:0051510 - regulation of unidimensional cell growth GO:0080006 - internode patterning GO:0048364 - root development GO:0003677 - DNA binding GO:0003682 - chromatin binding GO:0005634 - nucleus GO:0045892 - negative regulation of transcription, DNA-dependent GO:0006355 - regulation of transcription, DNA-dependent GO:0048366 - leaf development GO:0009555 - pollen development GO:0010229 - inflorescence development GO:0012501 - programmed cell death GO:0042127 - regulation of cell proliferation GO:0030154 - cell differentiation GO:0048653 - anther development GO:0048437 - floral organ development GO:0001558 - regulation of cell growth GO:0010088 - phloem development GO:0010158 - abaxial cell fate specification GO:0048316 - seed development	TO:0000085 - leaf rolling TO:0000397 - grain size TO:0006022 - floral organ development trait TO:0000587 - endosperm quality TO:0000474 - glume opening TO:0000079 - lemma and palea anatomy and morphology trait TO:0000207 - plant height TO:0000421 - pollen fertility TO:0001006 - adventitious root number TO:0000165 - panicle exsertion TO:0000495 - chlorophyll content TO:0000227 - root length TO:0002681 - leaf curling TO:0001012 - lateral root length TO:0000019 - seedling height TO:0000657 - spikelet anatomy and morphology trait TO:0002689 - leaf sheath length TO:0000072 - awn length TO:0000166 - gibberellic acid sensitivity TO:0002675 - gibberellic acid content TO:0000145 - internode length TO:0000449 - grain yield per plant TO:0000653 - seed development trait TO:0000211 - gel consistency TO:0000598 - protein content TO:0000196 - amylose content TO:0000455 - seed set percent TO:0000734 - grain length TO:0000040 - panicle length TO:0000152 - panicle number TO:0000382 - 1000-seed weight TO:0000326 - leaf color TO:0001027 - net photosynthetic rate TO:0000135 - leaf length TO:0000295 - chlorophyll-b content TO:0002757 - flag leaf length TO:0000370 - leaf width TO:0000316 - photosynthetic ability TO:0000462 - gelatinization temperature TO:0000656 - root development trait TO:0000396 - grain yield TO:0000162 - seed quality TO:0000053 - pollen sterility TO:0000391 - seed size TO:0000655 - leaf development trait	PO:0001170 - seed development stage PO:0025034 - leaf PO:0009051 - spikelet PO:0009047 - stem PO:0020104 - leaf sheath PO:0025426 - phloem development stage PO:0000017 - vascular leaf primordium PO:0020148 - shoot apical meristem PO:0009049 - inflorescence PO:0001007 - pollen development stage PO:0009005 - root PO:0020141 - stem node PO:0001004 - anther development stage PO:0025585 - floral organ formation stage PO:0007520 - root development stage PO:0020142 - stem internode PO:0000293 - guard cell PO:0006019 - leaf abaxial epidermis PO:0001050 - leaf development stage	Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os09g23200.1
AGPL2	OsAGPL2 osagpl2 APL2 OsAPL2 AGPiso sh2 Sh2 GIF2 GAS1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2	sativa ADP-glucose pyrophosphorylase large subunit 2 ADP-glucose Pyrophosphorylase large subunit 2 AGPase large subunit 2 AGPase large unit 2 ADP-glucose pyrophosphorylase subunit SH2 GRAIN INCOMPLETE FILLING 2	1	Seed - Morphological traits - Endosperm Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Biochemical character Seed - Physiological traits - Storage substances	GO:0008878 - glucose-1-phosphate adenylyltransferase activity GO:0009058 - biosynthetic process GO:0010035 - response to inorganic substance GO:0009269 - response to desiccation GO:0005829 - cytosol GO:0009536 - plastid GO:0016779 - nucleotidyltransferase activity GO:0005978 - glycogen biosynthetic process GO:0009651 - response to salt stress GO:0048316 - seed development GO:0010431 - seed maturation GO:0010581 - regulation of starch biosynthetic process GO:0019252 - starch biosynthetic process	TO:0000162 - seed quality TO:0000382 - 1000-seed weight TO:0000394 - drought related trait TO:0002661 - seed maturation TO:0000653 - seed development trait TO:0000480 - nutrient sensitivity TO:0000104 - floury endosperm TO:0000696 - starch content TO:0000100 - shrunken endosperm TO:0000396 - grain yield TO:0006001 - salt tolerance TO:0000590 - grain weight	PO:0009089 - endosperm PO:0001170 - seed development stage PO:0007632 - seed maturation stage PO:0009010 - seed PO:0007022 - seed imbibition stage PO:0009001 - fruit	Os01g0633100 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g44220.7 LOC_Os01g44220.6 LOC_Os01g44220.5 LOC_Os01g44220.1 LOC_Os01g44220.2 LOC_Os01g44220.3 LOC_Os01g44220.4
AGPL3	OsAGPL3 APL3 OsAPL3 AGPlar OsAGPL1 AGPL1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3	sativa ADP-glucose pyrophosphorylase large subunit 3 ADP-glucose Pyrophosphorylase large subunit 3 AGPase large subunit 3 AGPase large unit 1 AGPase L1	5	Biochemical character Tolerance and resistance - Stress tolerance Vegetative organ - Culm Character as QTL - Yield and productivity	GO:0009058 - biosynthetic process GO:0009536 - plastid GO:0009629 - response to gravity GO:0009413 - response to flooding GO:0008878 - glucose-1-phosphate adenylyltransferase activity GO:0016779 - nucleotidyltransferase activity GO:0019252 - starch biosynthetic process GO:0009959 - negative gravitropism	TO:0000207 - plant height TO:0000567 - tiller angle TO:0000286 - submergence sensitivity TO:0000396 - grain yield TO:0000696 - starch content TO:0000346 - tiller number TO:0002693 - gravity response trait	PO:0009066 - anther PO:0025034 - leaf PO:0004006 - mesophyll cell PO:0005020 - vascular bundle PO:0020104 - leaf sheath PO:0000074 - parenchyma cell PO:0009047 - stem PO:0009010 - seed PO:0009089 - endosperm	Os05g0580000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os05g50380.2 LOC_Os05g50380.1
AGPS2	OsAGPS2a AGPS2A AGPS2B OsAGPS2 osagps2 APS2 APS2a APS2b AGPS2a APGS2b OsAGPS2b AGPP GAS8 OsAPS2 OsAPS2a OsAPS2b	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2	sativa ADP-glucose pyrophosphorylase small subunit 2a sativa ADP-glucose pyrophosphorylase small subunit 2 ADP-glucose Pyrophosphorylase small subunit 2 AGPase small subunit 2 ADP-glucose pyrophosphorylase small subunit 2a ADP-glucose pyrophosphorylase 51kD subunit ADP-glucose pyrophosphorylase small unit 2 ADP-glucose pyrophosphorylase small subunit 2b	8	Seed - Morphological traits - Endosperm Character as QTL - Yield and productivity Seed - Physiological traits - Storage substances Biochemical character Tolerance and resistance - Stress tolerance	GO:0009408 - response to heat GO:0010035 - response to inorganic substance GO:0009269 - response to desiccation GO:0008878 - glucose-1-phosphate adenylyltransferase activity GO:0005982 - starch metabolic process GO:0005829 - cytosol GO:0019252 - starch biosynthetic process GO:0005524 - ATP binding GO:0009501 - amyloplast GO:0009507 - chloroplast GO:0009536 - plastid GO:0009415 - response to water GO:0000003 - reproduction GO:0009651 - response to salt stress GO:0009791 - post-embryonic development GO:0005978 - glycogen biosynthetic process	TO:0000394 - drought related trait TO:0000011 - nitrogen sensitivity TO:0000480 - nutrient sensitivity TO:0000237 - water stress trait TO:0000100 - shrunken endosperm TO:0000333 - sugar content TO:0002661 - seed maturation TO:0000259 - heat tolerance TO:0000696 - starch content TO:0000382 - 1000-seed weight TO:0006001 - salt tolerance	PO:0025034 - leaf PO:0007022 - seed imbibition stage PO:0009010 - seed PO:0009089 - endosperm PO:0007632 - seed maturation stage	Os08g0345800 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g25734.2 LOC_Os08g25734.1
ABI5	OsABI5 OsbZIP10 OsABF1 OREB1 OsABI5-1 OsABI5-2 OsOREB1 OREB1	ABA INSENSITIVE 5	ABA Insensitive 5 bZIP-type transcription factor ABI5 bZIP transcription factors OsABI5 bZIP transcription factor 10 Abscisic acid insensitive 5	1	Seed - Physiological traits - Storage substances Seed - Morphological traits - Grain shape Reproductive organ - Pollination, fertilization, fertility - Male sterility Tolerance and resistance - Stress tolerance Seed - Physiological traits - Dormancy Character as QTL - Germination Character as QTL - Grain quality Character as QTL - Yield and productivity	GO:0009725 - response to hormone stimulus GO:0010029 - regulation of seed germination GO:0010162 - seed dormancy GO:0045449 - regulation of transcription GO:0009787 - regulation of abscisic acid mediated signaling GO:0010581 - regulation of starch biosynthetic process GO:0009737 - response to abscisic acid stimulus GO:0045454 - cell redox homeostasis GO:0005982 - starch metabolic process GO:0006995 - cellular response to nitrogen starvation GO:0005985 - sucrose metabolic process GO:0009753 - response to jasmonic acid stimulus GO:0010187 - negative regulation of seed germination GO:0042744 - hydrogen peroxide catabolic process GO:0009409 - response to cold GO:0046345 - abscisic acid catabolic process GO:0009414 - response to water deprivation GO:0009738 - abscisic acid mediated signaling GO:0051171 - regulation of nitrogen compound metabolic process GO:0009651 - response to salt stress GO:0045893 - positive regulation of transcription, DNA-dependent GO:0031667 - response to nutrient levels GO:0010152 - pollen maturation GO:0003700 - transcription factor activity GO:0009845 - seed germination GO:0042594 - response to starvation GO:0009739 - response to gibberellin stimulus GO:0009733 - response to auxin stimulus GO:0005634 - nucleus GO:0043565 - sequence-specific DNA binding GO:0019740 - nitrogen utilization GO:0010372 - positive regulation of gibberellin biosynthetic process GO:0030187 - melatonin biosynthetic process	TO:0000615 - abscisic acid sensitivity TO:0000303 - cold tolerance TO:0000276 - drought tolerance TO:0000250 - vigor related trait TO:0000401 - plant growth hormone sensitivity TO:0000605 - hydrogen peroxide content TO:0000430 - germination rate TO:0000696 - starch content TO:0000196 - amylose content TO:0000097 - amylopectin content TO:0000382 - 1000-seed weight TO:0002658 - starch grain synthesis TO:0002656 - starch grain shape TO:0000266 - chalky endosperm TO:0000399 - grain thickness TO:0000590 - grain weight TO:0000134 - alkali digestion TO:0002667 - abscisic acid content TO:0000011 - nitrogen sensitivity TO:0000396 - grain yield TO:0000172 - jasmonic acid sensitivity TO:0000053 - pollen sterility TO:0000253 - seed dormancy TO:0002672 - auxin content TO:0000604 - fat and essential oil content TO:0002653 - endosperm storage protein content TO:0000300 - glucose content TO:0000455 - seed set percent TO:0000040 - panicle length TO:0000462 - gelatinization temperature TO:0000211 - gel consistency TO:0000487 - endosperm color TO:0000162 - seed quality TO:0000166 - gibberellic acid sensitivity TO:0000163 - auxin sensitivity TO:0000919 - grain weight TO:0000397 - grain size TO:0000483 - germinability at low temperature TO:0000420 - fertility related trait TO:0000429 - salt sensitivity	PO:0009049 - inflorescence PO:0007057 - 0 seed germination stage PO:0020091 - obsolete microgametophyte PO:0025500 - whole plant fruit development stage PO:0009010 - seed	Os01g0859300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g64000.1 LOC_Os01g64000.2 LOC_Os01g64000.3
AGO17	OsAGO17	ARGONAUTE 17	Protein argonaute 17	2	Character as QTL - Yield and productivity Seed - Physiological traits - Storage substances Other Seed - Morphological traits Reproductive organ - panicle Vegetative organ - Culm	GO:0003676 - nucleic acid binding GO:0005739 - mitochondrion GO:0031047 - gene silencing by RNA GO:0051512 - positive regulation of unidimensional cell growth GO:0005634 - nucleus	TO:0000592 - 1000-dehulled grain weight TO:0000397 - grain size TO:0000455 - seed set percent TO:0000266 - chalky endosperm TO:0000456 - spikelet number TO:0000207 - plant height TO:0000391 - seed size TO:0000657 - spikelet anatomy and morphology trait TO:0000590 - grain weight TO:0000576 - stem length TO:0000051 - stem strength TO:0000449 - grain yield per plant TO:0000734 - grain length TO:0000040 - panicle length TO:0000339 - stem thickness TO:0000145 - internode length	PO:0020141 - stem node	Os02g0169400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g07310.1
AGO2	OsAGO2	ARGONAUTE 2	sativa Argonaute 2 Protein argonaute 2 ARGONAUTE2	4	Tolerance and resistance - Stress tolerance Other Tolerance and resistance - Disease resistance Character as QTL - Yield and productivity Coloration - Chlorophyll Vegetative organ - Leaf Seed - Morphological traits - Grain shape	GO:0009409 - response to cold GO:0009658 - chloroplast organization GO:0003676 - nucleic acid binding GO:0043067 - regulation of programmed cell death GO:0051607 - defense response to virus GO:0031047 - gene silencing by RNA GO:0046466 - membrane lipid catabolic process GO:0009737 - response to abscisic acid stimulus GO:0009690 - cytokinin metabolic process GO:0048316 - seed development GO:0009651 - response to salt stress GO:0050687 - negative regulation of defense response to virus GO:0006306 - DNA methylation GO:0010150 - leaf senescence	TO:0000734 - grain length TO:0000455 - seed set percent TO:0000615 - abscisic acid sensitivity TO:0002660 - cytokinin content TO:0000249 - leaf senescence TO:0006001 - salt tolerance TO:0002715 - chloroplast development trait TO:0000495 - chlorophyll content TO:0000020 - black streak dwarf virus resistance TO:0000326 - leaf color TO:0001015 - photosynthetic rate TO:0000269 - 100-seed weight TO:0000605 - hydrogen peroxide content TO:0000449 - grain yield per plant TO:0000396 - grain yield TO:0000316 - photosynthetic ability TO:0000303 - cold tolerance		Os04g0615700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g52540.1
BGAL14	OsBgal14 OsBGal14 OsEnS-135 OsMEG2 MEG2	BETA-GALACTOSIDASE 14	Beta-galactosidase 14 Lactase 14 endosperm-specific gene 135 maternally expressed gene 2	10	Character as QTL - Yield and productivity Biochemical character	GO:0048046 - apoplast GO:0043169 - cation binding GO:0016023 - cytoplasmic membrane-bounded vesicle GO:0004565 - beta-galactosidase activity GO:0005975 - carbohydrate metabolic process GO:0005529 - sugar binding	TO:0000382 - 1000-seed weight		Os10g0340600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os10g19960.1
DCL3B	OsDCL3b	DICER-LIKE 3B	Endoribonuclease Dicer homolog 3b Dicer-like protein 3b	10	Biochemical character Seed - Physiological traits - Storage substances Character as QTL - Yield and productivity Seed - Physiological traits	GO:0005634 - nucleus GO:0008026 - ATP-dependent helicase activity GO:0009536 - plastid GO:0030145 - manganese ion binding GO:0000287 - magnesium ion binding GO:0003725 - double-stranded RNA binding GO:0004525 - ribonuclease III activity GO:0005524 - ATP binding GO:0006396 - RNA processing GO:0000380 - alternative nuclear mRNA splicing, via spliceosome GO:0031047 - gene silencing by RNA	TO:0000162 - seed quality TO:0000421 - pollen fertility TO:0000455 - seed set percent TO:0002673 - amino acid content TO:0000396 - grain yield TO:0000598 - protein content TO:0000180 - spikelet fertility		Os10g0485600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os10g34430.1
CKX4	OsCKX4 ckx4 OsSCRM OsSCRM2 SCRM SCRM2	CYTOKININ OXIDASE/DEHYDROGENASE 4	Putative cytokinin dehydrogenase 4 cytokinin oxidase 4	1	Character as QTL - Grain quality Vegetative organ - Root Tolerance and resistance - Stress tolerance Vegetative organ - Culm Seed - Morphological traits - Grain shape Tolerance and resistance - Disease resistance Character as QTL - Yield and productivity Biochemical character	GO:0009725 - response to hormone stimulus GO:0019139 - cytokinin dehydrogenase activity GO:0048364 - root development GO:0009736 - cytokinin mediated signaling GO:0042594 - response to starvation GO:0009735 - response to cytokinin stimulus GO:0005615 - extracellular space GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity GO:0009690 - cytokinin metabolic process GO:0050660 - FAD binding GO:0032940 - secretion by cell GO:0009733 - response to auxin stimulus GO:0009753 - response to jasmonic acid stimulus GO:0009734 - auxin mediated signaling pathway GO:0016023 - cytoplasmic membrane-bounded vesicle GO:0022900 - electron transport chain GO:0016491 - oxidoreductase activity GO:0051607 - defense response to virus GO:0009823 - cytokinin catabolic process	TO:0000227 - root length TO:0000346 - tiller number TO:0000456 - spikelet number TO:0000401 - plant growth hormone sensitivity TO:0006032 - panicle size TO:0000734 - grain length TO:0000402 - grain width TO:0002660 - cytokinin content TO:0000656 - root development trait TO:0000011 - nitrogen sensitivity TO:0000207 - plant height TO:0000163 - auxin sensitivity TO:0000167 - cytokinin sensitivity TO:0000148 - viral disease resistance TO:0000019 - seedling height TO:0000020 - black streak dwarf virus resistance TO:0000382 - 1000-seed weight TO:0000172 - jasmonic acid sensitivity TO:0002685 - crown root number TO:0000449 - grain yield per plant TO:0000430 - germination rate TO:0000455 - seed set percent	PO:0009105 - inflorescence branch meristem PO:0009005 - root PO:0007520 - root development stage PO:0025034 - leaf	Os01g0940000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g71310.1
CKX6	OsCKX6	CYTOKININ OXIDASE/DEHYDROGENASE 6	cytokinin oxidase 6	2	Reproductive organ - panicle Seed - Physiological traits - Storage substances Character as QTL - Yield and productivity Character as QTL - Grain quality Biochemical character	GO:0005615 - extracellular space GO:0009690 - cytokinin metabolic process GO:0050660 - FAD binding GO:0019139 - cytokinin dehydrogenase activity GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity	TO:0002660 - cytokinin content TO:0002759 - grain number TO:0000040 - panicle length TO:0000266 - chalky endosperm		Os02g0220000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )
CKX7	OsCKX7	CYTOKININ OXIDASE/DEHYDROGENASE 7	cytokinin oxidase 7	2	Biochemical character Reproductive organ - panicle Seed - Physiological traits - Storage substances Character as QTL - Grain quality Seed - Morphological traits - Grain shape Tolerance and resistance - Disease resistance Character as QTL - Yield and productivity	GO:0019139 - cytokinin dehydrogenase activity GO:0050660 - FAD binding GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity GO:0009690 - cytokinin metabolic process GO:0005615 - extracellular space GO:0050832 - defense response to fungus GO:0009823 - cytokinin catabolic process	TO:0000734 - grain length TO:0000255 - sheath blight disease resistance TO:0000040 - panicle length TO:0002660 - cytokinin content TO:0000402 - grain width TO:0000266 - chalky endosperm TO:0000455 - seed set percent	PO:0020104 - leaf sheath	Os02g0220100 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g12780.1
CKX9	OsCKX9	CYTOKININ OXIDASE/DEHYDROGENASE 9	cytokinin oxidase 9	5	Biochemical character Tolerance and resistance - Stress tolerance Vegetative organ - Culm Character as QTL - Yield and productivity	GO:0005615 - extracellular space GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity GO:0009690 - cytokinin metabolic process GO:0050660 - FAD binding GO:0009735 - response to cytokinin stimulus GO:0009733 - response to auxin stimulus GO:0009725 - response to hormone stimulus GO:0042594 - response to starvation GO:0005829 - cytosol GO:0009823 - cytokinin catabolic process GO:0005634 - nucleus GO:0019139 - cytokinin dehydrogenase activity	TO:0000547 - primary branch number TO:0000011 - nitrogen sensitivity TO:0000163 - auxin sensitivity TO:0000167 - cytokinin sensitivity TO:0000207 - plant height TO:0000401 - plant growth hormone sensitivity TO:0000582 - inflorescence number TO:0000040 - panicle length TO:0002660 - cytokinin content TO:0000447 - filled grain number TO:0000346 - tiller number		Os05g0374200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os05g31040.1
CKX11	OsCKX11	CYTOKININ OXIDASE/DEHYDROGENASE 11	cytokinin oxidase 11	8	Character as QTL - Yield and productivity Biochemical character Character as QTL - Grain quality Seed - Physiological traits - Storage substances Reproductive organ - Panicle, Mode of branching	GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity GO:0009735 - response to cytokinin stimulus GO:0019139 - cytokinin dehydrogenase activity GO:0005615 - extracellular space GO:0050660 - FAD binding GO:0009690 - cytokinin metabolic process	TO:0000167 - cytokinin sensitivity TO:0002660 - cytokinin content TO:0000266 - chalky endosperm TO:0000455 - seed set percent TO:0000557 - secondary branch number TO:0000547 - primary branch number TO:0002759 - grain number		Os08g0460600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g35860.1
HOX29	Oshox29 OsHox29 OSHB5 HB5	HOMEOBOX GENE 29	rice homeobox gene 29 Homeobox-leucine zipper protein HOX29 Homeodomain transcription factor HOX29 HD-ZIP protein HOX29 HOMEODOMAIN CONTAINING PROTEIN 5	1	Other Seed - Morphological traits - Grain shape Character as QTL - Yield and productivity	GO:0003700 - transcription factor activity GO:0006350 - transcription GO:0005634 - nucleus GO:0043565 - sequence-specific DNA binding GO:0006355 - regulation of transcription, DNA-dependent	TO:0000397 - grain size		Os01g0200300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g10320.1
HAP2I	OsHAP2I NF-YA CBF-B NF-YA8 OsNF-YA8 OsEnS-136 NFYA8	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A8 NUCLEAR FACTOR-Y subunit NF-YA8 NF-YA transcription factor 8 endosperm-specific gene 136 NF-YA subunit 8 NF-YA family 8	10	Character as QTL - Yield and productivity Other Seed - Morphological traits - Endosperm Seed - Morphological traits - Grain shape Character as QTL - Grain quality Tolerance and resistance - Disease resistance	GO:0010167 - response to nitrate GO:0009867 - jasmonic acid mediated signaling pathway GO:0009753 - response to jasmonic acid stimulus GO:0051607 - defense response to virus GO:0043565 - sequence-specific DNA binding GO:0006355 - regulation of transcription, DNA-dependent GO:0005634 - nucleus GO:0005737 - cytoplasm GO:0006350 - transcription	TO:0000148 - viral disease resistance TO:0000598 - protein content TO:0000011 - nitrogen sensitivity TO:0000172 - jasmonic acid sensitivity TO:0000266 - chalky endosperm TO:0000696 - starch content	PO:0009089 - endosperm	Os10g0397900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os10g25850.1
HAP2J	OsHAP2J NF-YA CBF-B NF-YA5 OsNF-YA5 NFYA5	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A5 NUCLEAR FACTOR-Y subunit NF-YA5 NF-YA transcription factor 5 NF-YA subunit 5 NF-YA family 5 NUCLEAR FACTOR-YA5	7	Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance Other Coloration - Chlorophyll Vegetative organ - Leaf	GO:0009867 - jasmonic acid mediated signaling pathway GO:0009753 - response to jasmonic acid stimulus GO:0005634 - nucleus GO:0010150 - leaf senescence GO:0045848 - positive regulation of nitrogen utilization GO:0042594 - response to starvation GO:0051607 - defense response to virus GO:0016602 - CCAAT-binding factor complex GO:0006995 - cellular response to nitrogen starvation GO:0043565 - sequence-specific DNA binding GO:0006350 - transcription GO:0006355 - regulation of transcription, DNA-dependent	TO:0000011 - nitrogen sensitivity TO:0002673 - amino acid content TO:0002759 - grain number TO:0000153 - relative yield TO:0000249 - leaf senescence TO:0000590 - grain weight TO:0001034 - relative plant height TO:0000181 - seed weight TO:0001016 - relative chlorophyll content TO:0000148 - viral disease resistance TO:0000172 - jasmonic acid sensitivity TO:0000495 - chlorophyll content	PO:0009047 - stem PO:0009005 - root	Os07g0158500 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g06470.2 LOC_Os07g06470.1
DEP1	OsDEP1 EP qPE9-1 DN1 DEP1/DN1/qPE9-1 qNGR9 qDEP1 RGG4/DEP1/DN1/qPE9-1/OsGGC3 RGG4 OsDN1 OsGGC3 GGC3	DENSE AND ERECT PANICLE 1	dense and erect panicle 1 erect-pose panicle DENSE PANICLE 1 DENSE AND ERECT PANICLE1 DENSE AND ERECT PANICLES 1 G gamma subunit DEP1 Heterotrimeric G Protein gamma4 Subunit	9	Reproductive organ - Heading date Tolerance and resistance - Stress tolerance Vegetative organ - Root Reproductive organ - Panicle, Mode of branching Vegetative organ - Culm Character as QTL - Yield and productivity Seed - Morphological traits - Grain shape	GO:0035330 - regulation of hippo signaling cascade GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process GO:0010618 - aerenchyma formation GO:0010229 - inflorescence development GO:0051171 - regulation of nitrogen compound metabolic process GO:0043068 - positive regulation of programmed cell death GO:0005882 - intermediate filament GO:0005886 - plasma membrane GO:0009414 - response to water deprivation GO:0009409 - response to cold GO:0009651 - response to salt stress GO:0048573 - photoperiodism, flowering GO:0005634 - nucleus GO:0007186 - G-protein coupled receptor protein signaling pathway	TO:0000207 - plant height TO:0000152 - panicle number TO:0000397 - grain size TO:0000456 - spikelet number TO:0000734 - grain length TO:0000276 - drought tolerance TO:0000303 - cold tolerance TO:0000050 - inflorescence branching TO:0002731 - grain length to width ratio TO:0006001 - salt tolerance TO:0000455 - seed set percent TO:0002759 - grain number TO:0000396 - grain yield TO:0000382 - 1000-seed weight TO:0000605 - hydrogen peroxide content TO:0000137 - days to heading TO:0000043 - root anatomy and morphology trait TO:0000621 - inflorescence development trait TO:0000625 - spikelet density TO:0000040 - panicle length		Os09g0441900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os09g26999.1 LOC_Os09g26999.3 LOC_Os09g26999.2
DLT	dlt OsGRAS32 OsDLT OsDLT1 DTL1 OsGRAS-32 OsGRAS32 GRAS-32 GRAS32 SMOS2/DLT SMOS2 OsSMOS2 OsGS6 GS6 DLT/GS6/SMOS2	DWARF AND LOW-TILLERING	GRAS protein 32 SMALL ORGAN SIZE 2	6	Vegetative organ - Root Character as QTL - Plant growth activity Vegetative organ - Culm Tolerance and resistance - Stress tolerance Vegetative organ - Leaf Reproductive organ - Heading date Seed - Morphological traits - Grain shape Character as QTL - Yield and productivity Seed - Morphological traits	GO:0010422 - regulation of brassinosteroid biosynthetic process GO:0080006 - internode patterning GO:0009742 - brassinosteroid mediated signaling GO:0009741 - response to brassinosteroid stimulus GO:0009734 - auxin mediated signaling pathway GO:0010229 - inflorescence development GO:0007275 - multicellular organismal development GO:0051302 - regulation of cell division GO:0008283 - cell proliferation GO:0000226 - microtubule cytoskeleton organization GO:0016131 - brassinosteroid metabolic process GO:0005634 - nucleus GO:0009755 - hormone-mediated signaling GO:0010928 - regulation of auxin mediated signaling pathway GO:0006355 - regulation of transcription, DNA-dependent GO:0006351 - transcription, DNA-dependent	TO:0002616 - flowering time TO:0000326 - leaf color TO:0002637 - leaf size TO:0000040 - panicle length TO:0002688 - leaf lamina joint bending TO:0000346 - tiller number TO:0000011 - nitrogen sensitivity TO:0002677 - brassinosteroid sensitivity TO:0000152 - panicle number TO:0000227 - root length TO:0000145 - internode length TO:0000621 - inflorescence development trait TO:0000357 - growth and development trait TO:0002676 - brassinosteroid content TO:0001035 - stem width TO:0000206 - leaf angle TO:0000397 - grain size TO:0002684 - plant cell size TO:0000329 - tillering ability TO:0002601 - stamen size TO:0002602 - pistil size TO:0000019 - seedling height TO:0000207 - plant height TO:0000391 - seed size TO:0000576 - stem length	PO:0001083 - inflorescence development stage	Os06g0127800 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g03710.1
PIP1;2	OsPIP1;2 PIP1-2 OsPIP1-2	PLASMA MEMBRANE INTRINSIC PROTEIN 1;2	Probable aquaporin PIP1-2 Plasma membrane intrinsic protein 1-2	4	Character as QTL - Yield and productivity Biochemical character Tolerance and resistance - Stress tolerance	GO:0005886 - plasma membrane GO:0055085 - transmembrane transport GO:0005215 - transporter activity GO:0009414 - response to water deprivation GO:0006970 - response to osmotic stress GO:0016021 - integral to membrane GO:0009737 - response to abscisic acid stimulus GO:0010037 - response to carbon dioxide GO:0015770 - sucrose transport GO:0009409 - response to cold GO:0009915 - phloem loading GO:0009651 - response to salt stress GO:0034021 - response to silicon dioxide GO:0046686 - response to cadmium ion	TO:0000303 - cold tolerance TO:0000396 - grain yield TO:0000615 - abscisic acid sensitivity TO:0000394 - drought related trait TO:0000291 - carbohydrate content TO:0000095 - osmotic response sensitivity TO:0006001 - salt tolerance TO:0001015 - photosynthetic rate TO:0000522 - stomatal conductance	PO:0000003 - whole plant PO:0004006 - mesophyll cell PO:0025034 - leaf PO:0009005 - root	Os04g0559700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g47220.1
PIP1;3	OsPIP1;3. PIP1.3 PIP1-3 RWC3 RWC-3 OsPIP1-3	PLASMA MEMBRANE INTRINSIC PROTEIN 1;3	Aquaporin PIP 1.3 Aquaporin PIP 1-3 Plasma membrane intrinsic protein 1-3 Water channel protein RWC3 Aquaporin RWC3	2	Biochemical character Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Seed - Physiological traits - Dormancy Tolerance and resistance - Disease resistance	GO:0006950 - response to stress GO:0042128 - nitrate assimilation GO:0009409 - response to cold GO:0009414 - response to water deprivation GO:0042542 - response to hydrogen peroxide GO:0006970 - response to osmotic stress GO:0010036 - response to boron GO:0046713 - boron transport GO:0005215 - transporter activity GO:0005886 - plasma membrane GO:0006833 - water transport GO:0009651 - response to salt stress GO:0016020 - membrane GO:0006810 - transport GO:0042742 - defense response to bacterium GO:0015250 - water channel activity GO:0016021 - integral to membrane GO:0055085 - transmembrane transport GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity TO:0000276 - drought tolerance TO:0001027 - net photosynthetic rate TO:0000357 - growth and development trait TO:0000018 - boron sensitivity TO:0000303 - cold tolerance TO:0006001 - salt tolerance TO:0000442 - plant fresh weight TO:0000175 - bacterial blight disease resistance TO:0000457 - total biomass yield TO:0000207 - plant height TO:0000241 - leaf number TO:0000352 - plant dry weight TO:0000095 - osmotic response sensitivity TO:0001017 - water use efficiency	PO:0025034 - leaf PO:0009005 - root PO:0005059 - root endodermis	Os02g0823100 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g57720.1
MIR159A	miR159a osa-miR159a osa-MIR159a OsmiR159a OsmiR159a.2 miR159a.2 OsmiR159a.1 miR159a.1 osa-miR159a.1 osa-miR159a.2	MICRORNA159A		1	Tolerance and resistance - Insect resistance Seed - Morphological traits Vegetative organ - Culm Seed - Physiological traits - Storage substances Character as QTL - Yield and productivity Reproductive organ - Spikelet, flower, glume, awn Reproductive organ - Pollination, fertilization, fertility Other Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance	GO:0009409 - response to cold GO:0035195 - gene silencing by miRNA GO:0050832 - defense response to fungus GO:0002213 - defense response to insect GO:0016442 - RNA-induced silencing complex GO:0035068 - micro-ribonucleoprotein complex GO:0048443 - stamen development GO:0009555 - pollen development GO:0006379 - mRNA cleavage GO:0048316 - seed development	TO:0000187 - anther color TO:0000653 - seed development trait TO:0000207 - plant height TO:0000485 - sterility related trait TO:0000303 - cold tolerance TO:0000447 - filled grain number TO:0000424 - brown planthopper resistance TO:0000342 - panicle axis angle TO:0000371 - yield trait TO:0000053 - pollen sterility TO:0000074 - blast disease TO:0000696 - starch content TO:0006032 - panicle size TO:0000734 - grain length	PO:0001170 - seed development stage PO:0001007 - pollen development stage	Os01g0507000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g32259.1
LIC	OsC3H46 C3H46 OsLIC OsFLA6 FLA6 OsC3H52 C3H52	LEAF AND TILLER ANGLE INCREASED CONTROLLER	Zinc finger CCCH domain-containing protein 46 LEAF and TILLER ANGLE INCREASED CONTROLLER Flag leaf angle 6 CCCH Zinc Finger Family Gene 52	6	Other Reproductive organ - panicle Character as QTL - Yield and productivity Vegetative organ - Leaf Seed - Morphological traits - Grain shape Vegetative organ - Culm	GO:0009742 - brassinosteroid mediated signaling GO:0003677 - DNA binding GO:0008270 - zinc ion binding GO:0005634 - nucleus GO:0009741 - response to brassinosteroid stimulus GO:0005737 - cytoplasm GO:0006355 - regulation of transcription, DNA-dependent GO:0005739 - mitochondrion	TO:0000547 - primary branch number TO:0000445 - seed number TO:0002688 - leaf lamina joint bending TO:0000207 - plant height TO:0000124 - flag leaf angle TO:0000449 - grain yield per plant TO:0000447 - filled grain number TO:0000557 - secondary branch number TO:0000206 - leaf angle TO:0002677 - brassinosteroid sensitivity TO:0000040 - panicle length TO:0000396 - grain yield TO:0000397 - grain size TO:0000402 - grain width TO:0000567 - tiller angle		Os06g0704300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g49080.1
ERF3	AP37 OsAP37 OsERF3 OsERF#075 OsERF075 OsERF75 ERF75 AP2/EREBP#004 AP2/EREBP4 OsBIERF2 BIERF2 DLN23 OsDLN23	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3	Apetela2 transcription factor 37 ethylene response factor 3 Ethylene responsive factor 3 ethylene response factor 75 APETALA2/ethylene-responsive element binding protein 4 benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 2 benzothiadiazole-induced ethylene responsive transcriptional factor 2 BTH-induced ethylene responsive transcriptional factor 2 ethylene-responsive element binding factor 3 APETALA37 DLN repressor 23 DLN motif protein 23	1	Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Other Vegetative organ - Root	GO:0009873 - ethylene mediated signaling pathway GO:0009651 - response to salt stress GO:0009414 - response to water deprivation GO:0003700 - transcription factor activity GO:0009733 - response to auxin stimulus GO:0009735 - response to cytokinin stimulus GO:0005634 - nucleus GO:0006351 - transcription, DNA-dependent GO:0048364 - root development GO:0003677 - DNA binding GO:0010366 - negative regulation of ethylene biosynthetic process GO:0009736 - cytokinin mediated signaling	TO:0000173 - ethylene sensitivity TO:0000276 - drought tolerance TO:0000656 - root development trait TO:0000167 - cytokinin sensitivity TO:0000164 - stress trait TO:0000163 - auxin sensitivity TO:0000371 - yield trait TO:0006001 - salt tolerance	PO:0007518 - crown root emergence stage PO:0000043 - crown root	Os01g0797600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g58420.1
HAK18	OsHAK18	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18	High-affinity Potassium(K+) Transporter 18 Potassium transporter 18	9	Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Biochemical character	GO:0005886 - plasma membrane GO:0006814 - sodium ion transport GO:0008643 - carbohydrate transport GO:0009651 - response to salt stress GO:0016021 - integral to membrane GO:0030955 - potassium ion binding GO:0015079 - potassium ion transmembrane transporter activity GO:0006813 - potassium ion transport GO:0009915 - phloem loading GO:0055075 - potassium ion homeostasis GO:0010233 - phloem transport GO:0009416 - response to light stimulus	TO:0000609 - potassium content TO:0000396 - grain yield TO:0000333 - sugar content TO:0000455 - seed set percent TO:0000340 - total soluble sugar content TO:0000075 - light sensitivity TO:0006001 - salt tolerance TO:0020003 - shoot potassium content TO:0000447 - filled grain number TO:0000457 - total biomass yield TO:0000525 - sodium to potassium content ratio TO:0000040 - panicle length TO:0000207 - plant height TO:0000346 - tiller number	PO:0006023 - bundle sheath PO:0005417 - phloem PO:0005020 - vascular bundle PO:0009046 - flower PO:0000071 - companion cell PO:0020124 - root stele PO:0005352 - xylem PO:0000074 - parenchyma cell PO:0025034 - leaf PO:0004006 - mesophyll cell	Os09g0563200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os09g38960.2 LOC_Os09g38960.3 LOC_Os09g38960.4
NYC3	nyc3 OsNYC3 PPH	NON-YELLOW COLORING 3	pheophytinase	6	Tolerance and resistance - Disease resistance Character as QTL - Yield and productivity Coloration - Chlorophyll Vegetative organ - Leaf Biochemical character	GO:0016787 - hydrolase activity GO:0010941 - regulation of cell death GO:0050832 - defense response to fungus GO:0015996 - chlorophyll catabolic process GO:0080124 - pheophytinase activity GO:0010150 - leaf senescence GO:0009536 - plastid GO:0009645 - response to low light intensity stimulus	TO:0000447 - filled grain number TO:0000326 - leaf color TO:0000249 - leaf senescence TO:0000074 - blast disease TO:0000590 - grain weight TO:0000340 - total soluble sugar content TO:0000291 - carbohydrate content TO:0000696 - starch content TO:0000333 - sugar content TO:0000382 - 1000-seed weight TO:0000396 - grain yield TO:0000255 - sheath blight disease resistance TO:0000207 - plant height TO:0000605 - hydrogen peroxide content TO:0000495 - chlorophyll content TO:0000460 - light intensity sensitivity	PO:0001054 - 4 leaf senescence stage	Os06g0354700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g24730.3 LOC_Os06g24730.2 LOC_Os06g24730.1
HD3B	Hd17 EF7 Ef7 OsELF3-1 ELF3-1 OsELF3 ELF3 ELF3_chr.6 OsELF3.1 ELF3.1 OsELF3a ELF3a	HEADING DATE 3B	HEADING DATE 17 EARLINESS 7 EARLY FLOWERING 3-1 EARLY FLOWERING3.1 EARLY FLOWERING 3.1 ELF3 homolog 1 Heading date from Qingluzhan 11 EARLY FLOWERING3	6	Tolerance and resistance - Disease resistance Reproductive organ - Heading date Vegetative organ - Leaf Character as QTL - Yield and productivity	GO:0009648 - photoperiodism GO:0048576 - positive regulation of short-day photoperiodism, flowering GO:0005634 - nucleus GO:0045892 - negative regulation of transcription, DNA-dependent GO:0050832 - defense response to fungus GO:0048573 - photoperiodism, flowering GO:0031348 - negative regulation of defense response GO:0007623 - circadian rhythm GO:0048578 - positive regulation of long-day photoperiodism, flowering GO:0009908 - flower development	TO:0001034 - relative plant height TO:0000229 - photoperiod sensitivity TO:0000011 - nitrogen sensitivity TO:0000153 - relative yield TO:0000074 - blast disease TO:0001032 - relative panicle number TO:0000249 - leaf senescence TO:0000396 - grain yield TO:0000207 - plant height TO:0002616 - flowering time TO:0000137 - days to heading TO:0000590 - grain weight	PO:0025034 - leaf PO:0009005 - root PO:0001054 - 4 leaf senescence stage PO:0009049 - inflorescence PO:0009047 - stem	Os06g0142600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g05060.1
GAMYBL2	OsGAMYBL2 Os2R_MYB40 2R_MYB40 MYB2-45 OsMYB2-45	GAMYB-LIKE 2	R2R3-MYB Transcription Factor 40 R2R3-MYB transcription factor 2-45	3	Other Seed - Morphological traits - Grain shape Tolerance and resistance - Insect resistance Character as QTL - Yield and productivity Character as QTL - Plant growth activity	GO:0009742 - brassinosteroid mediated signaling GO:0005634 - nucleus GO:0002213 - defense response to insect GO:0010476 - gibberellin-mediated signaling GO:0009908 - flower development	TO:0000357 - growth and development trait TO:0000424 - brown planthopper resistance TO:0000397 - grain size		Os03g0578900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g38210.1
PROG1	OsPROG1 ZOS7-02 OsZOS7-02	PROSTRATE GROWTH 1	zinc-finger nuclear transcription factor PROG1 zinc-finger protein TFIIIA class of Oryza sativa 7-02 ZPT of Oryza sativa 7-02	7	Other Character as QTL - Yield and productivity Vegetative organ - Culm	GO:0009536 - plastid GO:0005634 - nucleus GO:0048873 - homeostasis of number of cells within a tissue GO:0016563 - transcription activator activity	TO:0000547 - primary branch number TO:0000207 - plant height TO:0002759 - grain number TO:0000567 - tiller angle TO:0000440 - grain number per plant TO:0000557 - secondary branch number TO:0000152 - panicle number TO:0000449 - grain yield per plant	PO:0009081 - inflorescence branch PO:0008019 - leaf lamina base PO:0005001 - basal axillary shoot system PO:0008017 - leaf sheath pulvinus	Os07g0153600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g05900.1
EP2	ep2 EP2/DEP2/SRS1 SRS1/DEP2 DEP2 SRS1 OsSRS1 CL7(t) OsRELA RELA SUG1 OsSUG1	ERECT PANICLE 2	erect panical 2 Erect panicle2 erect panicle2-1 erect panicle2-2 dense and erect panicle 2 small and round seed 1 cleistogamy 7 cleistogamy gene on chromosome 7 regulator of leaf angle suppressor of GS2AA 1	7	Tolerance and resistance - Disease resistance Character as QTL - Plant growth activity Seed - Morphological traits - Grain shape Vegetative organ - Leaf Character as QTL - Yield and productivity Reproductive organ - Panicle, Mode of branching	GO:0050777 - negative regulation of immune response GO:0009937 - regulation of gibberellic acid mediated signaling GO:0032491 - detection of molecule of fungal origin GO:0002679 - respiratory burst during defense response GO:0002221 - pattern recognition receptor signaling pathway GO:0050832 - defense response to fungus GO:0009742 - brassinosteroid mediated signaling GO:0005737 - cytoplasm GO:0009741 - response to brassinosteroid stimulus GO:0010200 - response to chitin GO:0001558 - regulation of cell growth GO:0009739 - response to gibberellin stimulus GO:0010371 - regulation of gibberellin biosynthetic process GO:0009740 - gibberellic acid mediated signaling GO:0005634 - nucleus GO:0006355 - regulation of transcription, DNA-dependent GO:0010422 - regulation of brassinosteroid biosynthetic process	TO:0000050 - inflorescence branching TO:0000074 - blast disease TO:0002637 - leaf size TO:0000079 - lemma and palea anatomy and morphology trait TO:0000590 - grain weight TO:0000397 - grain size TO:0002677 - brassinosteroid sensitivity TO:0000472 - vascular bundle number TO:0002759 - grain number TO:0000342 - panicle axis angle TO:0000734 - grain length TO:0000339 - stem thickness TO:0000040 - panicle length TO:0000207 - plant height TO:0000557 - secondary branch number TO:0000180 - spikelet fertility TO:0000402 - grain width TO:0000382 - 1000-seed weight TO:0000051 - stem strength TO:0002688 - leaf lamina joint bending TO:0000166 - gibberellic acid sensitivity TO:0000206 - leaf angle TO:0002730 - grain shape TO:0000399 - grain thickness	PO:0009082 - spikelet floret PO:0025034 - leaf PO:0009037 - lemma PO:0009049 - inflorescence PO:0009038 - palea PO:0001083 - inflorescence development stage PO:0009047 - stem PO:0020104 - leaf sheath PO:0009005 - root PO:0005020 - vascular bundle	Os07g0616000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os07g42410.1
LPS1	SDH2 SDHB sdhB RPS14 rps14 sdh2-1 SDH2-RPS14 OsLPS1 OsSDH2-1	LATE PREMATURE SENESCENCE 1	SUCCINATE:UBIQUINONE OXIDOREDUCTASE mitochondrial succinate dehydrogenase subunit B ribosomal protein S14 succinate dehydrogenase (iron-sulphur protein subunit) chimeric SDH2-RPS14	8	Reproductive organ - Pollination, fertilization, fertility Coloration - Chlorophyll Coloration - Others Character as QTL - Yield and productivity Biochemical character Reproductive organ - panicle Vegetative organ - Culm Vegetative organ - Leaf Tolerance and resistance - Stress tolerance	GO:0006099 - tricarboxylic acid cycle GO:0051537 - 2 iron, 2 sulfur cluster binding GO:0007005 - mitochondrion organization GO:0009658 - chloroplast organization GO:0009055 - electron carrier activity GO:0000104 - succinate dehydrogenase activity GO:0016491 - oxidoreductase activity GO:0010150 - leaf senescence GO:0005739 - mitochondrion GO:0010229 - inflorescence development	TO:0000293 - chlorophyll-a content TO:0001015 - photosynthetic rate TO:0000316 - photosynthetic ability TO:0000040 - panicle length TO:0000522 - stomatal conductance TO:0000447 - filled grain number TO:0002715 - chloroplast development trait TO:0000639 - seed fertility TO:0000621 - inflorescence development trait TO:0000249 - leaf senescence TO:0000396 - grain yield TO:0000207 - plant height TO:0000137 - days to heading TO:0000605 - hydrogen peroxide content TO:0000455 - seed set percent TO:0006032 - panicle size TO:0000496 - carotenoid content TO:0000295 - chlorophyll-b content	PO:0001083 - inflorescence development stage PO:0000025 - root tip PO:0025034 - leaf PO:0001054 - 4 leaf senescence stage PO:0009066 - anther PO:0009072 - plant ovary	Os08g0120000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g02640.1 LOC_Os08g02640.2 LOC_Os08g02640.3 LOC_Os08g02640.4 LOC_Os08g02640.5
OG1	OsOPR7 OPR7 OsOPR13 OsOPR3 OsOPR5 OsOPR9 OsOPR08-1 OPR13 OPR3 OPR5 OPR9 OPR08-1 OsOPR8 OPR8	OPEN GLUME1	12-oxo-phytodienoic acid reductase 7 12-oxophytodienoate reductase7 OPDA reductase 7 open glume 1	8	Tolerance and resistance - Disease resistance Tolerance and resistance - Insect resistance Character as QTL - Yield and productivity Reproductive organ - Spikelet, flower, glume, awn Tolerance and resistance - Stress tolerance Biochemical character	GO:0002213 - defense response to insect GO:0051607 - defense response to virus GO:0009695 - jasmonic acid biosynthetic process GO:0002215 - defense response to nematode GO:0009737 - response to abscisic acid stimulus GO:0007623 - circadian rhythm GO:0050832 - defense response to fungus GO:0009828 - plant-type cell wall loosening GO:0016629 - 12-oxophytodienoate reductase activity GO:0005777 - peroxisome GO:0010181 - FMN binding GO:0009867 - jasmonic acid mediated signaling pathway GO:0052541 - plant-type cell wall cellulose metabolic process GO:0008643 - carbohydrate transport	TO:0000447 - filled grain number TO:0000696 - starch content TO:0000020 - black streak dwarf virus resistance TO:0002616 - flowering time TO:0000269 - 100-seed weight TO:0006009 - lodicule anatomy and morphology trait TO:0000396 - grain yield TO:0002668 - jasmonic acid content TO:0000615 - abscisic acid sensitivity TO:0000424 - brown planthopper resistance TO:0000074 - blast disease TO:0000184 - seed anatomy and morphology trait TO:0000384 - nematode damage resistance	PO:0009039 - glume PO:0025034 - leaf PO:0009036 - lodicule PO:0009047 - stem PO:0007616 - flowering stage	Os08g0459600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g35740.2 LOC_Os08g35740.1
BU1	ILI4 OsILI4 OsBU1 BU1/ILI4 OsbHLH172 bHLH172	BRASSINOSTEROID UPREGULATED 1	BRASSINOSTEROID UPREGULATED1 Increased Leaf Inclination4 BR upregulated 1 basic helix-loop-helix protein 172	6	Seed - Morphological traits - Grain shape Seed - Morphological traits Character as QTL - Plant growth activity Reproductive organ - Pollination, fertilization, fertility Vegetative organ - Culm Vegetative organ - Leaf Other Character as QTL - Yield and productivity	GO:0006355 - regulation of transcription, DNA-dependent GO:0005737 - cytoplasm GO:0009741 - response to brassinosteroid stimulus GO:0009742 - brassinosteroid mediated signaling GO:0046983 - protein dimerization activity GO:0040008 - regulation of growth GO:0006351 - transcription, DNA-dependent GO:0005634 - nucleus GO:0009723 - response to ethylene stimulus GO:0009753 - response to jasmonic acid stimulus	TO:0000326 - leaf color TO:0000492 - leaf shape TO:0000590 - grain weight TO:0000402 - grain width TO:0002677 - brassinosteroid sensitivity TO:0000206 - leaf angle TO:0000734 - grain length TO:0000397 - grain size TO:0000145 - internode length TO:0000207 - plant height TO:0000361 - stem anatomy and morphology trait TO:0000485 - sterility related trait TO:0000357 - growth and development trait TO:0002688 - leaf lamina joint bending TO:0000172 - jasmonic acid sensitivity TO:0000173 - ethylene sensitivity	PO:0005052 - plant callus	Os06g0226500 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g12210.1

1,067 Hit First Previous 1-50 51-100 101-150 151-200 201-250 251-300 Next Last All

GO:0005634-nucleus (313)
GO:0009651-response to salt stress (208)
GO:0009414-response to water deprivation (184)
GO:0009409-response to cold (166)
GO:0009737-response to abscisic acid ... (156)
GO:0005886-plasma membrane (137)
GO:0005737-cytoplasm (134)
GO:0010229-inflorescence development (131)
GO:0050832-defense response to fungus (130)
GO:0009408-response to heat (124)
GO:0005524-ATP binding (101)
GO:0003677-DNA binding (99)
GO:0016021-integral to membrane (97)
GO:0042742-defense response to bacterium (93)
GO:0009742-brassinosteroid mediated ... (83)
GO:0009733-response to auxin stimulus (81)
GO:0006355-regulation of transcripti ... (80)
GO:0009753-response to jasmonic acid ... (79)
GO:0048573-photoperiodism, flowering (76)
GO:0009741-response to brassinostero ... (74)
GO:0048364-root development (74)
GO:0048316-seed development (71)
GO:0042594-response to starvation (70)
GO:0003700-transcription factor activity (69)
GO:0009739-response to gibberellin s ... (62)
GO:0006970-response to osmotic stress (59)
GO:0010150-leaf senescence (58)
GO:0009507-chloroplast (57)
GO:0016020-membrane (57)
GO:0006979-response to oxidative stress (53)
GO:0005829-cytosol (52)
GO:0009867-jasmonic acid mediated si ... (52)
GO:0009658-chloroplast organization (50)
GO:0009734-auxin mediated signaling ... (50)
GO:0009738-abscisic acid mediated si ... (49)
GO:0010581-regulation of starch bios ... (46)
GO:0005783-endoplasmic reticulum (45)
GO:0046686-response to cadmium ion (45)
GO:0001558-regulation of cell growth (44)
GO:0009735-response to cytokinin sti ... (44)
GO:0006350-transcription (41)
GO:0007623-circadian rhythm (40)
GO:0009555-pollen development (40)
GO:0009413-response to flooding (39)
GO:0043565-sequence-specific DNA binding (39)
GO:0006351-transcription, DNA-dependent (38)
GO:0008270-zinc ion binding (38)
GO:0009416-response to light stimulus (38)
GO:0009960-endosperm development (38)
GO:0042127-regulation of cell prolif ... (38)
GO:0051607-defense response to virus (37)
GO:0009845-seed germination (36)
GO:0009740-gibberellic acid mediated ... (35)
GO:0002213-defense response to insect (34)
GO:0004674-protein serine/threonine ... (34)
GO:0010167-response to nitrate (34)
GO:0045892-negative regulation of tr ... (33)
GO:0006995-cellular response to nitr ... (32)
GO:0009736-cytokinin mediated signaling (31)
GO:0042542-response to hydrogen peroxide (31)
GO:0048653-anther development (31)
GO:0051302-regulation of cell division (30)
GO:0080050-regulation of seed develo ... (30)
GO:0009751-response to salicylic aci ... (29)
GO:0007275-multicellular organismal ... (28)
GO:0016036-cellular response to phos ... (28)
GO:0045893-positive regulation of tr ... (28)
GO:0006952-defense response (27)
GO:0010431-seed maturation (27)
GO:0046872-metal ion binding (27)
GO:0009611-response to wounding (26)
GO:0009863-salicylic acid mediated s ... (26)
GO:0009908-flower development (26)
GO:0005739-mitochondrion (25)
GO:0009723-response to ethylene stimulus (25)
GO:0030104-water homeostasis (25)
GO:0048366-leaf development (25)
GO:0060359-response to ammonium ion (25)
GO:0010109-regulation of photosynthesis (24)
GO:0035195-gene silencing by miRNA (24)
GO:0006379-mRNA cleavage (23)
GO:0009826-unidimensional cell growth (23)
GO:0016442-RNA-induced silencing complex (23)
GO:0035068-micro-ribonucleoprotein c ... (23)
GO:0042128-nitrate assimilation (22)
GO:0048437-floral organ development (22)
GO:0002679-respiratory burst during ... (21)
GO:0005506-iron ion binding (21)
GO:0005985-sucrose metabolic process (20)
GO:0051781-positive regulation of ce ... (20)
GO:0009685-gibberellin metabolic process (19)
GO:0009873-ethylene mediated signali ... (19)
GO:0009926-auxin polar transport (19)
GO:0010200-response to chitin (19)
GO:0030307-positive regulation of ce ... (19)
GO:0043067-regulation of programmed ... (19)
GO:0002238-response to molecule of f ... (18)
GO:0005982-starch metabolic process (18)
GO:0006109-regulation of carbohydrat ... (18)
GO:0006808-regulation of nitrogen ut ... (18)

PO:0025034-leaf (251)
PO:0009005-root (187)
PO:0009049-inflorescence (177)
PO:0009047-stem (125)
PO:0001083-inflorescence development ... (113)
PO:0020104-leaf sheath (97)
PO:0009010-seed (93)
PO:0001170-seed development stage (92)
PO:0009006-shoot system (54)
PO:0009066-anther (53)
PO:0007520-root development stage (44)
PO:0009089-endosperm (41)
PO:0007057-0 seed germination stage (40)
PO:0001054-4 leaf senescence stage (39)
PO:0007632-seed maturation stage (36)
PO:0009051-spikelet (34)
PO:0007633-endosperm development stage (33)
PO:0009009-plant embryo (31)
PO:0001004-anther development stage (30)
PO:0020141-stem node (29)
PO:0001007-pollen development stage (28)
PO:0020148-shoot apical meristem (26)
PO:0009030-carpel (25)
PO:0020103-flag leaf (24)
PO:0020142-stem internode (24)
PO:0009038-palea (21)
PO:0009037-lemma (20)
PO:0005020-vascular bundle (19)
PO:0000025-root tip (17)
PO:0005052-plant callus (17)
PO:0000003-whole plant (16)
PO:0007615-flower development stage (16)
PO:0008039-stem base (16)
PO:0009039-glume (16)
PO:0009046-flower (16)
PO:0004709-axillary bud (15)
PO:0005360-aleurone layer (15)
PO:0009025-vascular leaf (15)
PO:0001050-leaf development stage (13)
PO:0007089-stem elongation stage (13)
PO:0009072-plant ovary (13)
PO:0009082-spikelet floret (13)
PO:0009029-stamen (12)
PO:0004006-mesophyll cell (11)
PO:0007616-flowering stage (11)
PO:0009015-portion of vascular tissue (11)
PO:0000230-inflorescence meristem (10)
PO:0020033-coleoptile (10)
PO:0020121-lateral root (10)
PO:0025281-pollen (10)
PO:0000034-vascular system (9)
PO:0006327-spikelet meristem (9)
PO:0007022-seed imbibition stage (9)
PO:0009013-portion of meristem tissue (9)
PO:0000074-parenchyma cell (8)
PO:0006023-bundle sheath (8)
PO:0006343-axillary shoot system (8)
PO:0025395-floral organ (8)
PO:0000229-flower meristem (7)
PO:0005417-phloem (7)
PO:0006085-root meristem (7)
PO:0007045-coleoptile emergence stage (7)
PO:0007131-seedling development stage (7)
PO:0020039-leaf lamina (7)
PO:0020124-root stele (7)
PO:0025385-cutin (7)
PO:0025477-floral organ primordium (7)
PO:0025527-shoot system development ... (7)
PO:0000016-lateral root primordium (6)
PO:0000055-bud (6)
PO:0000258-root cortex (6)
PO:0007073-2 formation of axillary s ... (6)
PO:0007631-plant embryo stage (6)
PO:0009073-stigma (6)
PO:0020003-plant ovule (6)
PO:0025127-primordium (6)
PO:0000017-vascular leaf primordium (5)
PO:0000037-shoot apex (5)
PO:0005004-shoot node (5)
PO:0005352-xylem (5)
PO:0005679-epidermis (5)
PO:0005772-exodermis (5)
PO:0006000-caryopsis hull (5)
PO:0006079-shoot meristem (5)
PO:0007041-inflorescence emergence stage (5)
PO:0009036-lodicule (5)
PO:0009084-pericarp (5)
PO:0020048-microspore (5)
PO:0000043-crown root (4)
PO:0000293-guard cell (4)
PO:0001048-palea development stage (4)
PO:0005029-root primordium (4)
PO:0005059-root endodermis (4)
PO:0005421-parenchyma (4)
PO:0005427-sclerenchyma (4)
PO:0006012-leaf collar (4)
PO:0006036-root epidermis (4)
PO:0009000-pulvinus (4)
PO:0009105-inflorescence branch meristem (4)
PO:0020127-primary root (4)

TO:0000207-plant height (430)
TO:0000396-grain yield (420)
TO:0000040-panicle length (261)
TO:0000382-1000-seed weight (255)
TO:0000346-tiller number (250)
TO:0000447-filled grain number (240)
TO:0000734-grain length (235)
TO:0000397-grain size (234)
TO:0000590-grain weight (214)
TO:0006001-salt tolerance (201)
TO:0000455-seed set percent (198)
TO:0000276-drought tolerance (181)
TO:0000449-grain yield per plant (175)
TO:0000357-growth and development trait (157)
TO:0000615-abscisic acid sensitivity (153)
TO:0000303-cold tolerance (151)
TO:0002759-grain number (136)
TO:0000152-panicle number (134)
TO:0000605-hydrogen peroxide content (128)
TO:0000621-inflorescence development ... (118)
TO:0000259-heat tolerance (117)
TO:0000074-blast disease (116)
TO:0000371-yield trait (107)
TO:0000137-days to heading (105)
TO:0000557-secondary branch number (101)
TO:0000227-root length (93)
TO:0000696-starch content (88)
TO:0000163-auxin sensitivity (86)
TO:0000495-chlorophyll content (86)
TO:0000011-nitrogen sensitivity (85)
TO:0000653-seed development trait (84)
TO:0000172-jasmonic acid sensitivity (83)
TO:0000592-1000-dehulled grain weight (83)
TO:0000402-grain width (82)
TO:0000547-primary branch number (82)
TO:0000326-leaf color (78)
TO:0000145-internode length (74)
TO:0000175-bacterial blight disease ... (74)
TO:0002616-flowering time (74)
TO:0000456-spikelet number (72)
TO:0002677-brassinosteroid sensitivity (72)
TO:0000656-root development trait (69)
TO:0000266-chalky endosperm (68)
TO:0006032-panicle size (68)
TO:0000166-gibberellic acid sensitivity (67)
TO:0000180-spikelet fertility (66)
TO:0000391-seed size (64)
TO:0000206-leaf angle (60)
TO:0000162-seed quality (59)
TO:0000329-tillering ability (59)
TO:0000399-grain thickness (59)
TO:0000095-osmotic response sensitivity (58)
TO:0002657-oxidative stress (58)
TO:0000249-leaf senescence (57)
TO:0000050-inflorescence branching (55)
TO:0000316-photosynthetic ability (55)
TO:0000457-total biomass yield (52)
TO:0002730-grain shape (49)
TO:0000328-sucrose content (48)
TO:0000167-cytokinin sensitivity (47)
TO:0000196-amylose content (47)
TO:0000576-stem length (47)
TO:0002660-cytokinin content (47)
TO:0000153-relative yield (46)
TO:0002715-chloroplast development trait (46)
TO:0002672-auxin content (41)
TO:0002675-gibberellic acid content (40)
TO:0000293-chlorophyll-a content (39)
TO:0001015-photosynthetic rate (39)
TO:0000295-chlorophyll-b content (37)
TO:0000421-pollen fertility (36)
TO:0002688-leaf lamina joint bending (36)
TO:0001027-net photosynthetic rate (35)
TO:0001034-relative plant height (35)
TO:0000401-plant growth hormone sens ... (34)
TO:0000136-relative water content (33)
TO:0000432-temperature response trait (33)
TO:0002653-endosperm storage protein ... (33)
TO:0002673-amino acid content (33)
TO:0000300-glucose content (32)
TO:0002658-starch grain synthesis (32)
TO:0002667-abscisic acid content (32)
TO:0000075-light sensitivity (30)
TO:0000333-sugar content (30)
TO:0000567-tiller angle (30)
TO:0002661-seed maturation (30)
TO:0000522-stomatal conductance (29)
TO:0002668-jasmonic acid content (29)
TO:0006002-proline content (29)
TO:0000424-brown planthopper resistance (28)
TO:0000430-germination rate (28)
TO:0001016-relative chlorophyll content (27)
TO:0000019-seedling height (26)
TO:0000148-viral disease resistance (26)
TO:0000173-ethylene sensitivity (26)
TO:0000440-grain number per plant (26)
TO:0001018-transpiration rate (26)
TO:0000102-phosphorus sensitivity (25)
TO:0000255-sheath blight disease res ... (25)
TO:0000370-leaf width (25)

043_Character as QTL - Yield and pro ... (1067)
040_Tolerance and resistance - Stres ... (474)
005_Vegetative organ - Culm (387)
029_Seed - Morphological traits - Gr ... (316)
001_Biochemical character (302)
010_Reproductive organ - panicle (215)
004_Vegetative organ - Leaf (194)
038_Tolerance and resistance - Disea ... (189)
044_Character as QTL - Plant growth ... (164)
006_Vegetative organ - Root (129)
099_Other (125)
008_Reproductive organ - Heading date (115)
051_Reproductive organ - Spikelet, f ... (101)
042_Character as QTL - Grain quality (83)
033_Seed - Physiological traits - St ... (81)
023_Coloration - Chlorophyll (75)
026_Seed - Morphological traits (73)
048_Reproductive organ - Panicle, Mo ... (51)
028_Seed - Morphological traits - En ... (39)
045_Character as QTL - Germination (39)
011_Reproductive organ - Pollination ... (38)
039_Tolerance and resistance - Insec ... (34)
016_Reproductive organ - Pollination ... (33)
025_Seed (23)
031_Seed - Physiological traits - Do ... (21)
009_Reproductive organ - Inflorescence (19)
037_Tolerance and resistance - Lesio ... (19)
003_Vegetative organ - Shoot apical ... (12)
030_Seed - Physiological traits (12)
027_Seed - Morphological traits - Embryo (10)
035_Seed - Physiological traits - Taste (10)
018_Reproductive organ - Pollination ... (9)
007_Reproductive organ (6)
017_Reproductive organ - Pollination ... (6)
036_Tolerance and resistance (6)
050_Reproductive organ - Pollination ... (6)
022_Coloration - Anthocyanin (5)
024_Coloration - Others (5)
032_Seed - Physiological traits - Lo ... (4)
034_Seed - Physiological traits - Sh ... (4)
041_Character as QTL (4)
002_Vegetative organ (3)
020_Heterochrony (3)
021_Coloration (1)

Rice Database Oryzabase

Gene - List

List of Gene