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Search Condition : Filter(traitClassFacetEn:042_Character as QTL - Grain quality)
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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
FLO27 OsbZIP58
bZIP58
OsEnS-92
OsSMF1
SMF1
OsRISBZ1
RISBZ1/bZIP58
RISBZ1
OsFLO27
 FLOURY ENDOSPERM 27 bZIP transcription factor 58
rice seed b-Zipper 1
endosperm-specific gene 92
seed maturation factor 1
rice seed basic leucine zipper 1
RICE SEED bZIP1
 7 Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Other
 GO:0034976 - response to endoplasmic reticulum stress
GO:0009408 - response to heat
GO:0009845 - seed germination
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010581 - regulation of starch biosynthetic process
GO:0009960 - endosperm development
GO:0012501 - programmed cell death
GO:0010431 - seed maturation
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0030968 - endoplasmic reticulum unfolded protein response
 TO:0002653 - endosperm storage protein content
TO:0002661 - seed maturation
TO:0000104 - floury endosperm
TO:0000432 - temperature response trait
TO:0000259 - heat tolerance
TO:0002673 - amino acid content
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000402 - grain width
TO:0000734 - grain length
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0002656 - starch grain shape
TO:0000100 - shrunken endosperm
TO:0000487 - endosperm color
TO:0000490 - protein composition related trait
 PO:0007057 - 0 seed germination stage
PO:0007632 - seed maturation stage
PO:0009089 - endosperm
PO:0005360 - aleurone layer
PO:0007633 - endosperm development stage
Os07g0182000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g08420.1
AMY1A Amy1A/C*(RAmy1A/C)
alpha Amy7
AMY1.1
Amy1A
RAmy1A/C
Amy1A/C*
Amy1
Amy1A_C
OsAmy1A
alphaAmy7-C
RAmy1A
AmyI-1
OsAmyI-1
OsRamy1A
RAmy1A
 ALPHA-AMYLASE 1A Alpha-amylase1A
Alpha-amylase-1A
Alpha-amylase isozyme 1B
Amylase-1
alpha-amylase I-1
 2 Character as QTL - Grain quality
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
 GO:0010353 - response to trehalose stimulus
GO:0010030 - positive regulation of seed germination
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0004556 - alpha-amylase activity
GO:0010182 - sugar mediated signaling
GO:0005983 - starch catabolic process
GO:0009739 - response to gibberellin stimulus
GO:0005987 - sucrose catabolic process
GO:0009408 - response to heat
GO:0005509 - calcium ion binding
GO:0010212 - response to ionizing radiation
 TO:0000166 - gibberellic acid sensitivity
TO:0000161 - radiation response trait
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000266 - chalky endosperm
TO:0000409 - peak viscosity
TO:0000483 - germinability at low temperature
TO:0000259 - heat tolerance
TO:0002694 - fruit flavor trait
TO:0000615 - abscisic acid sensitivity
 PO:0001170 - seed development stage
PO:0007633 - endosperm development stage
PO:0009010 - seed
Os02g0765600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g52710.1
AMY1C Amy1A/C*(RAmy1A/C)
alpha Amy10
Amy1C
RAmy1A/C
Amy1A/C*
Amy3
RAmy1C
OsAmy1C
alphaAmy10-C
OsRAmy3A
RAmy3A
 ALPHA-AMYLASE 1C Alpha-amylase1C
Alpha-amylase 1C
Amylase-3
Alpha-amylase-1A
alpha-amylase 10-C
 2 Seed - Physiological traits - Dormancy
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Germination
 GO:0009737 - response to abscisic acid stimulus
GO:0004556 - alpha-amylase activity
GO:0005983 - starch catabolic process
GO:0005975 - carbohydrate metabolic process
GO:0005509 - calcium ion binding
GO:0009651 - response to salt stress
GO:0009845 - seed germination
GO:0009408 - response to heat
 TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000266 - chalky endosperm
 PO:0009010 - seed
PO:0007633 - endosperm development stage
PO:0007057 - 0 seed germination stage
Os02g0765400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g52700.1
SSIIIB OsSSIIIb. SSIII-1
SSIIIa
 SOLUBLE STARCH SYNTHASE IIIB 4 Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0009011 - starch synthase activity
GO:0009501 - amyloplast
GO:0019252 - starch biosynthetic process
GO:0010229 - inflorescence development
GO:0009507 - chloroplast
GO:0009408 - response to heat
 TO:0000396 - grain yield
TO:0000259 - heat tolerance
TO:0000604 - fat and essential oil content
TO:0000196 - amylose content
TO:0000382 - 1000-seed weight
TO:0000621 - inflorescence development trait
TO:0000696 - starch content
 PO:0009010 - seed
PO:0009072 - plant ovary
PO:0009009 - plant embryo
PO:0001083 - inflorescence development stage
PO:0009089 - endosperm
PO:0025034 - leaf
PO:0009049 - inflorescence
Os04g0624600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g53310.1
GHD7 Ghd2
Ghd7
OsGhd7
OsCCT26
OsCMF8
OsI
Ghd7/Hd4
Hd4
EH7-1/Hd4
Ghd7-0a
EH7-1
EH7/Ghd7
EH7
OsEH7
GLW7.1
OsGLW7.1
 HEADING DATE 7 heading date 7
"Grain number
plant height
and heading date7"
"GRAIN NUMBER
PLANT HEIGHT AND HEADING DATE 7"
CCT domain-containing gene 26
CCT (CO, CO-LIKE and TOC1) domain protein 26
CCT domain protein 26
CCT MOTIF FAMILY (CMF) gene 8
Early heading 7
"Grain Length
Width and Weight 7.1"
Grain height date 7
 7 Character as QTL - Yield and productivity
Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Grain shape
Character as QTL - Plant growth activity
Character as QTL - Grain quality
Heterochrony
Seed - Physiological traits
Vegetative organ - Culm
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
 GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009648 - photoperiodism
GO:0005985 - sucrose metabolic process
GO:0042128 - nitrate assimilation
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0045848 - positive regulation of nitrogen utilization
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0008643 - carbohydrate transport
GO:0048573 - photoperiodism, flowering
GO:0051781 - positive regulation of cell division
GO:0009416 - response to light stimulus
GO:0009740 - gibberellic acid mediated signaling
GO:0010229 - inflorescence development
GO:0007623 - circadian rhythm
GO:0030307 - positive regulation of cell growth
GO:0006109 - regulation of carbohydrate metabolic process
GO:0015770 - sucrose transport
GO:0006808 - regulation of nitrogen utilization
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0010109 - regulation of photosynthesis
GO:0009744 - response to sucrose stimulus
GO:0009745 - sucrose mediated signaling
 TO:0000621 - inflorescence development trait
TO:0000397 - grain size
TO:0000382 - 1000-seed weight
TO:0000734 - grain length
TO:0002653 - endosperm storage protein content
TO:0000590 - grain weight
TO:0002675 - gibberellic acid content
TO:0000266 - chalky endosperm
TO:0000469 - days to maturity
TO:0000456 - spikelet number
TO:0000229 - photoperiod sensitivity
TO:0000207 - plant height
TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0000050 - inflorescence branching
TO:0002759 - grain number
TO:0000011 - nitrogen sensitivity
TO:0000196 - amylose content
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000152 - panicle number
TO:0000696 - starch content
TO:0000107 - endosperm storage protein-1 content
TO:0000109 - endosperm storage protein-2 content
TO:0000137 - days to heading
TO:0000019 - seedling height
TO:0000211 - gel consistency
TO:0002616 - flowering time
TO:0000710 - globulin protein content
TO:0000449 - grain yield per plant
TO:0000352 - plant dry weight
TO:0002680 - albumin content
TO:0000357 - growth and development trait
 PO:0001083 - inflorescence development stage
Os07g0261200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g15770.1
GIF1 gif1
CIN2
OsCIN2
OsGIF1
WB1
OsWB1
GIF1/OsCIN2
 GRAIN INCOMPLETE FILLING 1 grain incomplete filling 1
"Beta-fructofuranosidase
insoluble isoenzyme 2"
Sucrose hydrolase 2
Invertase 2
Cell wall beta-fructosidase 2
cell-wall invertase 2
White Belly 1
 4 Seed - Morphological traits
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Physiological traits - Taste
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
 GO:0005987 - sucrose catabolic process
GO:0016787 - hydrolase activity
GO:0048046 - apoplast
GO:0051707 - response to other organism
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0005986 - sucrose biosynthetic process
GO:0004564 - beta-fructofuranosidase activity
GO:0004575 - sucrose alpha-glucosidase activity
GO:0005618 - cell wall
GO:0005975 - carbohydrate metabolic process
GO:0009960 - endosperm development
 TO:0000696 - starch content
TO:0000734 - grain length
TO:0000097 - amylopectin content
TO:0000382 - 1000-seed weight
TO:0000447 - filled grain number
TO:0000456 - spikelet number
TO:0000328 - sucrose content
TO:0000391 - seed size
TO:0000455 - seed set percent
TO:0000300 - glucose content
TO:0000311 - invertase activity
TO:0000221 - glume color
TO:0002656 - starch grain shape
TO:0000146 - seed length
TO:0000149 - seed width
TO:0000304 - seed thickness
TO:0000162 - seed quality
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0006005 - fructose content
TO:0000592 - 1000-dehulled grain weight
TO:0000196 - amylose content
TO:0000590 - grain weight
TO:0002661 - seed maturation
TO:0000266 - chalky endosperm
TO:0000575 - endosperm related trait
TO:0000487 - endosperm color
 PO:0005019 - carpel vascular system
PO:0009089 - endosperm
PO:0009084 - pericarp
PO:0007633 - endosperm development stage
PO:0006326 - inflorescence internode
PO:0000025 - root tip
Os04g0413500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g33740.1
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Coloration - Chlorophyll
Other
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
Seed - Morphological traits
Vegetative organ - Culm
 GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009739 - response to gibberellin stimulus
GO:0009957 - epidermal cell fate specification
GO:0051510 - regulation of unidimensional cell growth
GO:0080006 - internode patterning
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0012501 - programmed cell death
GO:0042127 - regulation of cell proliferation
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0048437 - floral organ development
GO:0001558 - regulation of cell growth
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0048316 - seed development
 TO:0000085 - leaf rolling
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000587 - endosperm quality
TO:0000474 - glume opening
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0001006 - adventitious root number
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0002681 - leaf curling
TO:0001012 - lateral root length
TO:0000019 - seedling height
TO:0000657 - spikelet anatomy and morphology trait
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000598 - protein content
TO:0000196 - amylose content
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000382 - 1000-seed weight
TO:0000326 - leaf color
TO:0001027 - net photosynthetic rate
TO:0000135 - leaf length
TO:0000295 - chlorophyll-b content
TO:0002757 - flag leaf length
TO:0000370 - leaf width
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000053 - pollen sterility
TO:0000391 - seed size
TO:0000655 - leaf development trait
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0025426 - phloem development stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020141 - stem node
PO:0001004 - anther development stage
PO:0025585 - floral organ formation stage
PO:0007520 - root development stage
PO:0020142 - stem internode
PO:0000293 - guard cell
PO:0006019 - leaf abaxial epidermis
PO:0001050 - leaf development stage
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
ABI5 OsABI5
OsbZIP10
OsABF1
OREB1
OsABI5-1
OsABI5-2
OsOREB1
OREB1
 ABA INSENSITIVE 5 ABA Insensitive 5
bZIP-type transcription factor ABI5
bZIP transcription factors OsABI5
bZIP transcription factor 10
Abscisic acid insensitive 5
 1 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Grain shape
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Character as QTL - Germination
Character as QTL - Grain quality
Character as QTL - Yield and productivity
 GO:0009725 - response to hormone stimulus
GO:0010029 - regulation of seed germination
GO:0010162 - seed dormancy
GO:0045449 - regulation of transcription
GO:0009787 - regulation of abscisic acid mediated signaling
GO:0010581 - regulation of starch biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0045454 - cell redox homeostasis
GO:0005982 - starch metabolic process
GO:0006995 - cellular response to nitrogen starvation
GO:0005985 - sucrose metabolic process
GO:0009753 - response to jasmonic acid stimulus
GO:0010187 - negative regulation of seed germination
GO:0042744 - hydrogen peroxide catabolic process
GO:0009409 - response to cold
GO:0046345 - abscisic acid catabolic process
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009651 - response to salt stress
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0031667 - response to nutrient levels
GO:0010152 - pollen maturation
GO:0003700 - transcription factor activity
GO:0009845 - seed germination
GO:0042594 - response to starvation
GO:0009739 - response to gibberellin stimulus
GO:0009733 - response to auxin stimulus
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0019740 - nitrogen utilization
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0030187 - melatonin biosynthetic process
 TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
TO:0000250 - vigor related trait
TO:0000401 - plant growth hormone sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000430 - germination rate
TO:0000696 - starch content
TO:0000196 - amylose content
TO:0000097 - amylopectin content
TO:0000382 - 1000-seed weight
TO:0002658 - starch grain synthesis
TO:0002656 - starch grain shape
TO:0000266 - chalky endosperm
TO:0000399 - grain thickness
TO:0000590 - grain weight
TO:0000134 - alkali digestion
TO:0002667 - abscisic acid content
TO:0000011 - nitrogen sensitivity
TO:0000396 - grain yield
TO:0000172 - jasmonic acid sensitivity
TO:0000053 - pollen sterility
TO:0000253 - seed dormancy
TO:0002672 - auxin content
TO:0000604 - fat and essential oil content
TO:0002653 - endosperm storage protein content
TO:0000300 - glucose content
TO:0000455 - seed set percent
TO:0000040 - panicle length
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000487 - endosperm color
TO:0000162 - seed quality
TO:0000166 - gibberellic acid sensitivity
TO:0000163 - auxin sensitivity
TO:0000919 - grain weight
TO:0000397 - grain size
TO:0000483 - germinability at low temperature
TO:0000420 - fertility related trait
TO:0000429 - salt sensitivity
 PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
PO:0020091 - obsolete microgametophyte
PO:0025500 - whole plant fruit development stage
PO:0009010 - seed
Os01g0859300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
LOX1 OsLOX1
OsLOX5
 LIPOXYGENASE 1 lipoxygenase 1
Probable lipoxygenase 4
lipoxygenase 5
 3 Seed - Morphological traits - Embryo
Biochemical character
Seed - Physiological traits
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
 GO:0009611 - response to wounding
GO:0009266 - response to temperature stimulus
GO:0009793 - embryonic development ending in seed dormancy
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0008652 - cellular amino acid biosynthetic process
GO:0019216 - regulation of lipid metabolic process
GO:0006629 - lipid metabolic process
GO:0005506 - iron ion binding
GO:0016165 - lipoxygenase activity
GO:0031408 - oxylipin biosynthetic process
GO:0055114 - oxidation reduction
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0006979 - response to oxidative stress
 TO:0000196 - amylose content
TO:0006001 - salt tolerance
TO:0005001 - linoleic acid content
TO:0000435 - seed longevity
TO:0002657 - oxidative stress
TO:0000432 - temperature response trait
TO:0000620 - embryo development trait
TO:0000276 - drought tolerance
TO:0000345 - seed viability
TO:0000696 - starch content
TO:0000162 - seed quality
TO:0000211 - gel consistency
 PO:0007631 - plant embryo stage
Os03g0700700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g49380.3
LOC_Os03g49380.2
LOC_Os03g49380.1
CKX1 OsCKX1
 CYTOKININ OXIDASE/DEHYDROGENASE 1 cytokinin oxidase 1
 1 Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
 GO:0042594 - response to starvation
GO:0005615 - extracellular space
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009690 - cytokinin metabolic process
GO:0050660 - FAD binding
GO:0009725 - response to hormone stimulus
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009823 - cytokinin catabolic process
GO:0009793 - embryonic development ending in seed dormancy
GO:0019139 - cytokinin dehydrogenase activity
 TO:0000167 - cytokinin sensitivity
TO:0000011 - nitrogen sensitivity
TO:0002660 - cytokinin content
TO:0000163 - auxin sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000620 - embryo development trait
TO:0000266 - chalky endosperm
 PO:0007631 - plant embryo stage
PO:0009005 - root
Os01g0187600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g09260.1
CKX3 OsCKX3
ckx3
 CYTOKININ OXIDASE/DEHYDROGENASE 3 Putative cytokinin oxidase 3
cytokinin oxidase 3
 10 Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Biochemical character
 GO:0032940 - secretion by cell
GO:0050660 - FAD binding
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009690 - cytokinin metabolic process
GO:0005615 - extracellular space
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0016491 - oxidoreductase activity
GO:0019139 - cytokinin dehydrogenase activity
GO:0022900 - electron transport chain
GO:0009735 - response to cytokinin stimulus
 TO:0000266 - chalky endosperm
TO:0000167 - cytokinin sensitivity
 PO:0009005 - root
Os10g0483500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g34230.1
CKX4 OsCKX4
ckx4
OsSCRM
OsSCRM2
SCRM
SCRM2
 CYTOKININ OXIDASE/DEHYDROGENASE 4 Putative cytokinin dehydrogenase 4
cytokinin oxidase 4
 1 Character as QTL - Grain quality
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Biochemical character
 GO:0009725 - response to hormone stimulus
GO:0019139 - cytokinin dehydrogenase activity
GO:0048364 - root development
GO:0009736 - cytokinin mediated signaling
GO:0042594 - response to starvation
GO:0009735 - response to cytokinin stimulus
GO:0005615 - extracellular space
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009690 - cytokinin metabolic process
GO:0050660 - FAD binding
GO:0032940 - secretion by cell
GO:0009733 - response to auxin stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009734 - auxin mediated signaling pathway
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0022900 - electron transport chain
GO:0016491 - oxidoreductase activity
GO:0051607 - defense response to virus
GO:0009823 - cytokinin catabolic process
 TO:0000227 - root length
TO:0000346 - tiller number
TO:0000456 - spikelet number
TO:0000401 - plant growth hormone sensitivity
TO:0006032 - panicle size
TO:0000734 - grain length
TO:0000402 - grain width
TO:0002660 - cytokinin content
TO:0000656 - root development trait
TO:0000011 - nitrogen sensitivity
TO:0000207 - plant height
TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000148 - viral disease resistance
TO:0000019 - seedling height
TO:0000020 - black streak dwarf virus resistance
TO:0000382 - 1000-seed weight
TO:0000172 - jasmonic acid sensitivity
TO:0002685 - crown root number
TO:0000449 - grain yield per plant
TO:0000430 - germination rate
TO:0000455 - seed set percent
 PO:0009105 - inflorescence branch meristem
PO:0009005 - root
PO:0007520 - root development stage
PO:0025034 - leaf
Os01g0940000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g71310.1
CKX5 OsCKX5
ckx5
 CYTOKININ OXIDASE/DEHYDROGENASE 5 Putative cytokinin oxidase 5
cytokinin oxidase 5
 1 Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Biochemical character
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
 GO:0042594 - response to starvation
GO:0032940 - secretion by cell
GO:0005615 - extracellular space
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009694 - jasmonic acid metabolic process
GO:0009753 - response to jasmonic acid stimulus
GO:0009725 - response to hormone stimulus
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009823 - cytokinin catabolic process
GO:0009536 - plastid
GO:0016491 - oxidoreductase activity
GO:0019139 - cytokinin dehydrogenase activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0050660 - FAD binding
GO:0022900 - electron transport chain
 TO:0002660 - cytokinin content
TO:0000207 - plant height
TO:0000401 - plant growth hormone sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000266 - chalky endosperm
TO:0000011 - nitrogen sensitivity
TO:0000163 - auxin sensitivity
 Os01g0775400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g56810.2
LOC_Os01g56810.1
CKX6 OsCKX6
 CYTOKININ OXIDASE/DEHYDROGENASE 6 cytokinin oxidase 6
 2 Reproductive organ - panicle
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Character as QTL - Grain quality
Biochemical character
 GO:0005615 - extracellular space
GO:0009690 - cytokinin metabolic process
GO:0050660 - FAD binding
GO:0019139 - cytokinin dehydrogenase activity
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
 TO:0002660 - cytokinin content
TO:0002759 - grain number
TO:0000040 - panicle length
TO:0000266 - chalky endosperm
 Os02g0220000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
CKX7 OsCKX7
 CYTOKININ OXIDASE/DEHYDROGENASE 7 cytokinin oxidase 7
 2 Biochemical character
Reproductive organ - panicle
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
 GO:0019139 - cytokinin dehydrogenase activity
GO:0050660 - FAD binding
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009690 - cytokinin metabolic process
GO:0005615 - extracellular space
GO:0050832 - defense response to fungus
GO:0009823 - cytokinin catabolic process
 TO:0000734 - grain length
TO:0000255 - sheath blight disease resistance
TO:0000040 - panicle length
TO:0002660 - cytokinin content
TO:0000402 - grain width
TO:0000266 - chalky endosperm
TO:0000455 - seed set percent
 PO:0020104 - leaf sheath
Os02g0220100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g12780.1
CKX10 OsCKX10
 CYTOKININ OXIDASE/DEHYDROGENASE 10 cytokinin oxidase 10
 6 Character as QTL - Grain quality
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0005615 - extracellular space
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0050660 - FAD binding
GO:0019139 - cytokinin dehydrogenase activity
GO:0009690 - cytokinin metabolic process
 TO:0000266 - chalky endosperm
 Os06g0572300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g37500.1
CKX11 OsCKX11
 CYTOKININ OXIDASE/DEHYDROGENASE 11 cytokinin oxidase 11
 8 Character as QTL - Yield and productivity
Biochemical character
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Reproductive organ - Panicle, Mode of branching
 GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009735 - response to cytokinin stimulus
GO:0019139 - cytokinin dehydrogenase activity
GO:0005615 - extracellular space
GO:0050660 - FAD binding
GO:0009690 - cytokinin metabolic process
 TO:0000167 - cytokinin sensitivity
TO:0002660 - cytokinin content
TO:0000266 - chalky endosperm
TO:0000455 - seed set percent
TO:0000557 - secondary branch number
TO:0000547 - primary branch number
TO:0002759 - grain number
 Os08g0460600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g35860.1
HAP2I OsHAP2I
NF-YA
CBF-B
NF-YA8
OsNF-YA8
OsEnS-136
NFYA8
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A8
NUCLEAR FACTOR-Y subunit NF-YA8
NF-YA transcription factor 8
endosperm-specific gene 136
NF-YA subunit 8
NF-YA family 8
 10 Character as QTL - Yield and productivity
Other
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Tolerance and resistance - Disease resistance
 GO:0010167 - response to nitrate
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0051607 - defense response to virus
GO:0043565 - sequence-specific DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0006350 - transcription
 TO:0000148 - viral disease resistance
TO:0000598 - protein content
TO:0000011 - nitrogen sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000266 - chalky endosperm
TO:0000696 - starch content
 PO:0009089 - endosperm
Os10g0397900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g25850.1
HAP3D OsHAP3D
OsEnS-83
OsNF-YB9
NF-YB9
NFYB9
OsLEC1A
LEC1A
 HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX HAP3 subunit D
LEC1-type 3 subunit protein-D
endosperm-specific gene 83
NUCLEAR FACTOR-Y subunit B9
NUCLEAR FACTOR-Y subunit NF-YB9
HAP3 SUBUNIT D
NF-YB subunit 9
NF-YB family 9
 6 Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Other
Seed - Morphological traits - Grain shape
Character as QTL - Plant growth activity
Character as QTL - Grain quality
Reproductive organ - Pollination, fertilization, fertility - Sterility
 GO:0010581 - regulation of starch biosynthetic process
GO:0048316 - seed development
GO:0006350 - transcription
GO:0042127 - regulation of cell proliferation
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009790 - embryonic development
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0005737 - cytoplasm
GO:0009845 - seed germination
 TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000146 - seed length
TO:0000149 - seed width
TO:0000304 - seed thickness
TO:0000266 - chalky endosperm
TO:0000391 - seed size
TO:0000399 - grain thickness
TO:0000734 - grain length
TO:0020033 - glume length
TO:0000487 - endosperm color
TO:0000575 - endosperm related trait
TO:0000064 - embryo related trait
TO:0000485 - sterility related trait
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0000276 - drought tolerance
TO:0000211 - gel consistency
TO:0000162 - seed quality
TO:0000222 - head rice
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000346 - tiller number
TO:0000639 - seed fertility
TO:0000421 - pollen fertility
 PO:0001170 - seed development stage
PO:0009009 - plant embryo
PO:0009089 - endosperm
PO:0020094 - plant egg cell
PO:0000003 - whole plant
PO:0009010 - seed
Os06g0285200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g17480.1
HAP3K OsHAP3K/OsNF-YB1
OsHAP3K
OsNF-YB1
NF-YB1
nf-yb1
OsLEC1
OsNF-YB-1
NFYB1
OsEnS-41
 HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX Nuclear transcription factor Y subunit B-1
CCAAT-binding transcription factor subunit NF-YB1
leafy cotyledon 1
endosperm-specific gene 41
Nuclear Factor YB1
NUCLEAR FACTOR-Y subunit B1
NUCLEAR FACTOR-Y subunit NF-YB1
NF-YB subunit 1
NF-YB family 1
 2 Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Seed - Morphological traits
Other
Character as QTL - Germination
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
 GO:0010581 - regulation of starch biosynthetic process
GO:0048316 - seed development
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0048623 - seed germination on parent plant
GO:0010162 - seed dormancy
GO:0009737 - response to abscisic acid stimulus
GO:0010600 - regulation of auxin biosynthetic process
GO:0043565 - sequence-specific DNA binding
GO:0008283 - cell proliferation
GO:0009960 - endosperm development
GO:0009738 - abscisic acid mediated signaling
GO:0010431 - seed maturation
GO:0045449 - regulation of transcription
GO:0005829 - cytosol
GO:0009651 - response to salt stress
GO:0005737 - cytoplasm
 TO:0000734 - grain length
TO:0000184 - seed anatomy and morphology trait
TO:0000408 - hot paste viscosity
TO:0000409 - peak viscosity
TO:0000653 - seed development trait
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0000397 - grain size
TO:0000196 - amylose content
TO:0000379 - cool paste viscosity
TO:0000391 - seed size
TO:0000619 - vivipary
TO:0000399 - grain thickness
TO:0002661 - seed maturation
TO:0002672 - auxin content
TO:0000396 - grain yield
TO:0000696 - starch content
TO:0000604 - fat and essential oil content
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000382 - 1000-seed weight
TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000253 - seed dormancy
 PO:0007633 - endosperm development stage
PO:0009089 - endosperm
PO:0001170 - seed development stage
PO:0007632 - seed maturation stage
PO:0006220 - central endosperm
PO:0005360 - aleurone layer
Os02g0725900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g49410.1
_ GW5
OsGW5
qSW5
 _ seed width (QTL)-5
 5 Character as QTL - Grain quality
 TO:0000590 - grain weight
TO:0000391 - seed size
TO:0000402 - grain width
 -
GLW9 OsDof25
Dof25
OsDof-25
OsDof26
Dof26
OsGLW9
 GRAIN LENGTH AND WIDTH ON CHROMOSOME 9 DNA BINDING WITH ONE FINGER 25
Dof zinc factor 25
Dof transcription factor 25
DNA binding with one finger family transcription factor 25
 9 Other
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Character as QTL - Grain quality
Character as QTL - Yield and productivity
 GO:0009733 - response to auxin stimulus
GO:0010928 - regulation of auxin mediated signaling pathway
GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0003677 - DNA binding
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009734 - auxin mediated signaling pathway
GO:0005634 - nucleus
GO:0009740 - gibberellic acid mediated signaling
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000411 - seed length to width ratio
TO:0002672 - auxin content
TO:0000402 - grain width
TO:0000567 - tiller angle
TO:0000449 - grain yield per plant
TO:0002730 - grain shape
TO:0002675 - gibberellic acid content
TO:0000734 - grain length
TO:0000163 - auxin sensitivity
TO:0000456 - spikelet number
TO:0000447 - filled grain number
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
 Os09g0475800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g29960.1
FIE1 OsFIE1
OsWD40-154
OsEnS-116
OsFIE1/OsWD40-154
WD40-154
OsPcG6
PcG6
 FERTILIZATION-INDEPENDENT ENDOSPERM 1 FERTILIZATION-INDEPENDENT ENDOSPERM1
Fertilization-Independent Endosperm 1
dwarf and flower aberrant mutant
endosperm-specific gene 116
Polycomb group protein 6
 8 Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Physiological traits - Dormancy
Vegetative organ - Culm
Seed - Morphological traits
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
 GO:0010342 - cellularization of endosperm
GO:0010373 - negative regulation of gibberellin biosynthetic process
GO:0051782 - negative regulation of cell division
GO:0000003 - reproduction
GO:0009651 - response to salt stress
GO:0048598 - embryonic morphogenesis
GO:0010187 - negative regulation of seed germination
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0043078 - polar nucleus
GO:0009960 - endosperm development
GO:0010162 - seed dormancy
GO:0019216 - regulation of lipid metabolic process
GO:0048316 - seed development
GO:0009790 - embryonic development
GO:0016571 - histone methylation
GO:0006349 - genetic imprinting
GO:0043470 - regulation of carbohydrate catabolic process
GO:0048623 - seed germination on parent plant
 TO:0002667 - abscisic acid content
TO:0002673 - amino acid content
TO:0000653 - seed development trait
TO:0002675 - gibberellic acid content
TO:0000391 - seed size
TO:0000291 - carbohydrate content
TO:0000107 - endosperm storage protein-1 content
TO:0002653 - endosperm storage protein content
TO:0006001 - salt tolerance
TO:0000455 - seed set percent
TO:0002680 - albumin content
TO:0000710 - globulin protein content
TO:0000465 - mineral and ion content related trait
TO:0000281 - metabolite content related trait
TO:0000604 - fat and essential oil content
TO:0000253 - seed dormancy
TO:0000619 - vivipary
TO:0000064 - embryo related trait
 PO:0007633 - endosperm development stage
PO:0020056 - tegmen
PO:0020090 - embryo sac central cell
PO:0009089 - endosperm
PO:0001170 - seed development stage
PO:0007632 - seed maturation stage
Os08g0137250 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g04290.1
qAC9.3 amylose content (QTL) 9.3 Character as QTL - Grain quality
 -
WFP OsSPL14
SPL14
IPA1
WFP/IPA1
OsSPL14/WFP/IPA1
OsIPA1
IPA1/OsSPL14
 WEALTHY FARMER'S PANICLE IDEAL PLANT ARCHITECTURE 1
Ideal Plant Architecture 1
Ideal Plant Architecture1
Squamosa promoter-binding-like protein 14
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14
Squamosa promoter binding protein like-14
IDEAL PLANT ARCHITECTURE1
 8 Seed
Character as QTL - Yield and productivity
Vegetative organ - Culm
Vegetative organ - Leaf
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Vegetative organ - Root
Character as QTL - Germination
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Reproductive organ - Panicle, Mode of branching
Seed - Physiological traits - Dormancy
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
 GO:0003677 - DNA binding
GO:0010187 - negative regulation of seed germination
GO:0009740 - gibberellic acid mediated signaling
GO:0005634 - nucleus
GO:0048366 - leaf development
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0045449 - regulation of transcription
GO:0009960 - endosperm development
GO:0048623 - seed germination on parent plant
GO:0010231 - maintenance of seed dormancy
GO:0009607 - response to biotic stimulus
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0048506 - regulation of timing of meristematic phase transition
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009651 - response to salt stress
GO:0010081 - regulation of inflorescence meristem growth
GO:0009755 - hormone-mediated signaling
GO:0010432 - bract development
GO:0005982 - starch metabolic process
GO:0009409 - response to cold
GO:0060359 - response to ammonium ion
GO:0009736 - cytokinin mediated signaling
GO:0050832 - defense response to fungus
GO:0009626 - plant-type hypersensitive response
GO:0010050 - vegetative phase change
GO:0010162 - seed dormancy
GO:0048316 - seed development
GO:0045487 - gibberellin catabolic process
GO:0042742 - defense response to bacterium
GO:0048364 - root development
GO:0010229 - inflorescence development
 TO:0002759 - grain number
TO:0006001 - salt tolerance
TO:0000340 - total soluble sugar content
TO:0002637 - leaf size
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
TO:0002689 - leaf sheath length
TO:0002675 - gibberellic acid content
TO:0000017 - anatomy and morphology related trait
TO:0000396 - grain yield
TO:0000329 - tillering ability
TO:0000166 - gibberellic acid sensitivity
TO:0000586 - seminal root length
TO:0000050 - inflorescence branching
TO:0000346 - tiller number
TO:0002685 - crown root number
TO:0000011 - nitrogen sensitivity
TO:0000152 - panicle number
TO:0000455 - seed set percent
TO:0000357 - growth and development trait
TO:0000135 - leaf length
TO:0000619 - vivipary
TO:0000179 - biotic stress trait
TO:0000253 - seed dormancy
TO:0000227 - root length
TO:0000656 - root development trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000696 - starch content
TO:0002653 - endosperm storage protein content
TO:0000447 - filled grain number
TO:0000547 - primary branch number
TO:0000303 - cold tolerance
TO:0000222 - head rice
TO:0000104 - floury endosperm
TO:0000487 - endosperm color
TO:0000109 - endosperm storage protein-2 content
TO:0000175 - bacterial blight disease resistance
TO:0000107 - endosperm storage protein-1 content
TO:0000456 - spikelet number
TO:0000074 - blast disease
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0025487 - bract primordium
PO:0007057 - 0 seed germination stage
PO:0001083 - inflorescence development stage
PO:0007520 - root development stage
Os08g0509600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g39890.1
GW2 OsGW2
OsRING429
RING429
GNL44
OsGNL44
 GRAIN WEIGHT 2 GRAIN WIDTH AND WEIGHT2
Grain width 2
RING-type E3 ubiquitin ligase 429
GRAIN NUMBER AND LARGE GRAIN SIZE 44
 2 Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Taste
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
 GO:0005737 - cytoplasm
GO:0030308 - negative regulation of cell growth
GO:0005634 - nucleus
GO:0005829 - cytosol
GO:0006109 - regulation of carbohydrate metabolic process
GO:0048480 - stigma development
GO:0016567 - protein ubiquitination
GO:0010498 - proteasomal protein catabolic process
GO:0051302 - regulation of cell division
GO:0080050 - regulation of seed development
GO:0016874 - ligase activity
GO:0008270 - zinc ion binding
 TO:0000382 - 1000-seed weight
TO:0000402 - grain width
TO:0002658 - starch grain synthesis
TO:0002653 - endosperm storage protein content
TO:0000409 - peak viscosity
TO:0000590 - grain weight
TO:0000374 - breakdown viscosity
TO:0000196 - amylose content
TO:0000097 - amylopectin content
TO:0000044 - stigma exsertion
TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0000396 - grain yield
TO:0000547 - primary branch number
TO:0000397 - grain size
TO:0000040 - panicle length
TO:0000211 - gel consistency
TO:0000734 - grain length
TO:0000391 - seed size
TO:0000487 - endosperm color
TO:0000266 - chalky endosperm
 PO:0001170 - seed development stage
PO:0005360 - aleurone layer
PO:0009005 - root
PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009066 - anther
Os02g0244100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g14720.2
LOC_Os02g14720.1
GBSSII GBSS2
OsGBSSII
OsGBSS2
 GRANULE BOUND STARCH SYNTHASE II Granule-bound starch synthase Ib
Granule-bound starch synthase II
granule-bound starch synthase 2
 7 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
 GO:0009408 - response to heat
GO:0009269 - response to desiccation
GO:0005982 - starch metabolic process
GO:0019252 - starch biosynthetic process
GO:0004373 - glycogen (starch) synthase activity
GO:0010229 - inflorescence development
GO:0009011 - starch synthase activity
 TO:0000259 - heat tolerance
TO:0000394 - drought related trait
TO:0000621 - inflorescence development trait
TO:0000696 - starch content
TO:0000196 - amylose content
TO:0000266 - chalky endosperm
TO:0000382 - 1000-seed weight
TO:0000328 - sucrose content
TO:0002653 - endosperm storage protein content
 PO:0009072 - plant ovary
PO:0025034 - leaf
PO:0009009 - plant embryo
PO:0001083 - inflorescence development stage
Os07g0412100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g22930.4
LOC_Os07g22930.3
LOC_Os07g22930.2
PUL OsPUL
SDBE
OsPUL3
RE
 PULLULANASE R-enzyme
starch debranching enzyme
 4 Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Biochemical character
 GO:0004556 - alpha-amylase activity
GO:0051060 - pullulanase activity
GO:0005975 - carbohydrate metabolic process
GO:0009413 - response to flooding
GO:0010021 - amylopectin biosynthetic process
 TO:0000286 - submergence sensitivity
 PO:0009089 - endosperm
Os04g0164900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
D35 d35
d35(t)
dwf30
OsKOL2
KOL2
KO2
OsKO2
OSKO2
KO
CYP701A
CYP701A6
Os KO2
OsKOL2/CYP701A
 DWARF TANGINBOZU tanginbozu dwarf
Tan-Ginbozu
dwarf-35
ent-kaurene oxidase2
cytochrome P450 701A6
 6 Character as QTL - Grain quality
Biochemical character
Vegetative organ - Culm
 GO:0009739 - response to gibberellin stimulus
GO:0004497 - monooxygenase activity
GO:0009055 - electron carrier activity
GO:0009686 - gibberellin biosynthetic process
GO:0010241 - ent-kaurene oxidase activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0022900 - electron transport chain
GO:0032940 - secretion by cell
GO:0020037 - heme binding
 TO:0000266 - chalky endosperm
TO:0000207 - plant height
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000397 - grain size
TO:0000734 - grain length
TO:0000399 - grain thickness
TO:0000576 - stem length
 PO:0020104 - leaf sheath
PO:0020039 - leaf lamina
PO:0020122 - inflorescence axis
PO:0009047 - stem
PO:0009049 - inflorescence
Os06g0570100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g37364.1
LOC_Os06g37364.2
LOC_Os06g37364.3
GLUA2 Glua2*
Glua2
GLUA-2
GluA-2
Glu20
GluA2
OsEnS-137
 GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES Glutelin subfamily A2 from wild rice species
Glutelin type-A 2 precursor
Glutelin type-A 2
Glutelin type II
Glutelin type-A 2 acidic chain
Glutelin type-A 2 basic chain
Glutelin subfamily A-2 from wild rice species
Rice glutelin-20
glutelin-20
endosperm-specific gene 137
 10 Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
 GO:0009651 - response to salt stress
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0045735 - nutrient reservoir activity
 TO:0006001 - salt tolerance
TO:0000162 - seed quality
TO:0000490 - protein composition related trait
TO:0002653 - endosperm storage protein content
TO:0000598 - protein content
 PO:0009010 - seed
PO:0009089 - endosperm
PO:0006220 - central endosperm
Os10g0400200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g26060.1
SD1 sd1
sd1 (d47, sd1-d, sd1-1)
d49(sd1-r)
d47
C20OX2
OsGA20ox-2
OsGA20ox2
GA20ox-2
GA20OX2
GA20ox2
sd-1
SD1-ja
SD1-in
sd1-2
Sd-1
GA20
20ox2
Os20ox2
OsPHQ1
OsPHq1
PHq1
 SEMIDWARF 1 dee-geo-woo-gen dwarf(sd1-d)
green revolution gene
semidwarf-1
GA C20oxidase2
semidwarf-1
reimei dwarf(sd1-r)
Calrose76(sd1-3)
Jikkoku(sd1-2). rice GA 20-oxidase2
GA 20-oxidase 2
Gibberellin 20 oxidase 2
Gibberellin C-20 oxidase 2
GA 20-oxidase 2
Protein semidwarf-1
semi-dwarf1
 1 Vegetative organ - Culm
Reproductive organ - Heading date
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0010581 - regulation of starch biosynthetic process
GO:0009628 - response to abiotic stimulus
GO:0005982 - starch metabolic process
GO:0005506 - iron ion binding
GO:0009685 - gibberellin metabolic process
GO:0009826 - unidimensional cell growth
GO:0016491 - oxidoreductase activity
GO:0045544 - gibberellin 20-oxidase activity
GO:0009609 - response to symbiotic bacterium
GO:0009686 - gibberellin biosynthetic process
GO:0055114 - oxidation reduction
GO:0080006 - internode patterning
GO:0030912 - response to deep water
GO:0048573 - photoperiodism, flowering
 TO:0000300 - glucose content
TO:0000333 - sugar content
TO:0000207 - plant height
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0002675 - gibberellic acid content
TO:0006005 - fructose content
TO:0000524 - submergence tolerance
TO:0002616 - flowering time
TO:0000137 - days to heading
TO:0000068 - lodging incidence
TO:0000576 - stem length
TO:0000401 - plant growth hormone sensitivity
TO:0000328 - sucrose content
TO:0000599 - enzyme activity
TO:0000357 - growth and development trait
 PO:0009010 - seed
PO:0020142 - stem internode
PO:0009047 - stem
PO:0009009 - plant embryo
Os01g0883800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g66100.1
SBE3 SBEIII*
SBEIII
Sbe3
RBE3
QEIIa
QEIIA
BEIIb
BEIIB
SBEIIb
OsBEIIb
sbe3
SBE III
OsSBEIIb
SBEIIb
 STARCH BRANCHING ENZYME 3 starch branching enzyme3
starch branching enzyme 3
Starch branching enzyme III
Starch branching enzyme-3
starch branching enzyme IIb
branching enzyme-3
Q-enzyme IIa
starch Branching enzyme isoform Type B
Branching enzyme isoform Type B
BE isoform type B
 2 Seed - Physiological traits
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Character as QTL - Grain quality
 GO:0009408 - response to heat
GO:0005982 - starch metabolic process
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005976 - polysaccharide metabolic process
GO:0009501 - amyloplast
GO:0009568 - amyloplast starch grain
GO:0019252 - starch biosynthetic process
GO:0003844 - 1,4-alpha-glucan branching enzyme activity
GO:0010021 - amylopectin biosynthetic process
 TO:0000696 - starch content
TO:0000604 - fat and essential oil content
TO:0000489 - carbohydrate composition related trait
TO:0002673 - amino acid content
TO:0000412 - setback viscosity
TO:0000409 - peak viscosity
TO:0000462 - gelatinization temperature
TO:0000196 - amylose content
TO:0000097 - amylopectin content
TO:0000291 - carbohydrate content
TO:0000011 - nitrogen sensitivity
TO:0000259 - heat tolerance
TO:0000374 - breakdown viscosity
TO:0002656 - starch grain shape
TO:0000333 - sugar content
 PO:0009089 - endosperm
PO:0007632 - seed maturation stage
Os02g0528200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g32660.2
LOC_Os02g32660.1
FLO2 flo2
flo3(t)
Osflo2
Osflo3(t)
Osflo-2
flo-2
FLO2-1
FLO2-2
 FLOURY ENDOSPERM 2 floury endosperm2
floury endosperm 2
floury endosperm-2
Floury 2
 4 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
 GO:0009960 - endosperm development
GO:0005829 - cytosol
GO:0010581 - regulation of starch biosynthetic process
GO:0005976 - polysaccharide metabolic process
GO:0009085 - lysine biosynthetic process
GO:0009568 - amyloplast starch grain
GO:0009737 - response to abscisic acid stimulus
 TO:0000490 - protein composition related trait
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0002658 - starch grain synthesis
TO:0000391 - seed size
TO:0000409 - peak viscosity
TO:0000487 - endosperm color
TO:0000357 - growth and development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0002656 - starch grain shape
TO:0000104 - floury endosperm
TO:0000615 - abscisic acid sensitivity
TO:0000266 - chalky endosperm
TO:0000382 - 1000-seed weight
TO:0002661 - seed maturation
TO:0000196 - amylose content
TO:0000105 - dull endosperm
TO:0000408 - hot paste viscosity
 PO:0009089 - endosperm
Os04g0645100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g55230.1
D1 d1
GPA1
GA1
OsGA1
RGA1
OsRGA1
dwf1
XA7
RGA
D1/RGA1
D89
TGW5
OsTGW5
SRG5
OsSRG5
 DAIKOKU DWARF daikoku dwarf
XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7
dwarf-1
Guanine nucleotide-binding protein alpha-1 subunit
GP-alpha-1
Protein Dwarf1
G-protein alpha subunit
GP-alpha-1
G-protein alpha subunit 1
dwarf69
dwarf 69
GTP binding protein alpha-subunit
dwarf 89
rice G protein a subunit 1
G protein a subunit 1
heterotrimeric G protein alpha-subunit
Thousand-Grain-Weight 5
small and round grain 5
 5 Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Seed - Morphological traits - Grain shape
Character as QTL - Germination
Character as QTL - Grain quality
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility
 GO:0080092 - regulation of pollen tube growth
GO:0003924 - GTPase activity
GO:0043067 - regulation of programmed cell death
GO:0004871 - signal transducer activity
GO:0009645 - response to low light intensity stimulus
GO:0005525 - GTP binding
GO:0045454 - cell redox homeostasis
GO:0009740 - gibberellic acid mediated signaling
GO:0006970 - response to osmotic stress
GO:0009755 - hormone-mediated signaling
GO:0010618 - aerenchyma formation
GO:0009687 - abscisic acid metabolic process
GO:0070509 - calcium ion import
GO:0010029 - regulation of seed germination
GO:0019722 - calcium-mediated signaling
GO:0005886 - plasma membrane
GO:0009269 - response to desiccation
GO:0005834 - heterotrimeric G-protein complex
GO:0010233 - phloem transport
GO:0006471 - protein amino acid ADP-ribosylation
GO:0048830 - adventitious root development
GO:0006952 - defense response
GO:0015770 - sucrose transport
GO:0009408 - response to heat
GO:0010038 - response to metal ion
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0007275 - multicellular organismal development
GO:0007186 - G-protein coupled receptor protein signaling pathway
GO:0009725 - response to hormone stimulus
 TO:0000576 - stem length
TO:0000382 - 1000-seed weight
TO:0000162 - seed quality
TO:0000557 - secondary branch number
TO:0000449 - grain yield per plant
TO:0000266 - chalky endosperm
TO:0000734 - grain length
TO:0000455 - seed set percent
TO:0000592 - 1000-dehulled grain weight
TO:0000080 - micronutrient sensitivity
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000145 - internode length
TO:0000299 - leaf lamina color
TO:0000492 - leaf shape
TO:0000391 - seed size
TO:0000040 - panicle length
TO:0000089 - panicle type
TO:0000462 - gelatinization temperature
TO:0002730 - grain shape
TO:0000259 - heat tolerance
TO:0000401 - plant growth hormone sensitivity
TO:0000135 - leaf length
TO:0000484 - seed shape
TO:0000303 - cold tolerance
TO:0000095 - osmotic response sensitivity
TO:0000132 - basal internode diameter
TO:0000397 - grain size
TO:0000408 - hot paste viscosity
TO:0002667 - abscisic acid content
TO:0000615 - abscisic acid sensitivity
TO:0000326 - leaf color
TO:0000507 - osmotic adjustment capacity
TO:0000276 - drought tolerance
TO:0000158 - red light sensitivity
TO:0000447 - filled grain number
TO:0000460 - light intensity sensitivity
TO:0000180 - spikelet fertility
TO:0000605 - hydrogen peroxide content
TO:0000327 - biomass yield
TO:0000207 - plant height
TO:0000227 - root length
TO:0000233 - root volume
TO:0000656 - root development trait
TO:0000370 - leaf width
TO:0000346 - tiller number
 PO:0020142 - stem internode
PO:0009049 - inflorescence
PO:0020039 - leaf lamina
PO:0000003 - whole plant
PO:0009010 - seed
PO:0009025 - vascular leaf
PO:0009047 - stem
Os05g0333200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26890.1
AMY2A Amy2A*(RAmy2A)
AMY1.5
AMYC2
RAmy2A
Amy4
Amy2A
 ALPHA-AMYLASE 2A Alpha-amylase2A
Alpha-amylase isozyme 2A
Alpha-amylase isozyme C2
Alpha-amylase-2A
Amylase-4
 6 Biochemical character
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Vegetative organ - Culm
 GO:0080006 - internode patterning
GO:0009739 - response to gibberellin stimulus
GO:0010182 - sugar mediated signaling
GO:0009414 - response to water deprivation
GO:0004556 - alpha-amylase activity
GO:0005509 - calcium ion binding
GO:0005975 - carbohydrate metabolic process
GO:0005983 - starch catabolic process
GO:0005987 - sucrose catabolic process
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0032940 - secretion by cell
 TO:0000544 - mesocotyl length
TO:0000276 - drought tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000266 - chalky endosperm
 Os06g0713800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g49970.2
WX1 wx (Wx(am))
Wx
WX-B
GBSS-I
GBSS
OsGBSSI
GBSS1
OsGBSS1
GBSSI
GSS
OsWx
 GLUTINOUS ENDOSPERM glutinous endosperm
waxy
Waxy
WAXY
"Granule-bound starch synthase 1
chloroplastic/amyloplastic"
Granule-bound starch synthase I
UDP-glycogen synthase
"Granule-bound starch synthase
chloroplast precursor"
glycogen [starch] synthase
Granule-bound glycogen synthase
UDPG-glycogen transglucosylase
uridine diphosphoglucose-glycogen glucosyltransferase
glycogen [starch] synthetase
Granule-bound glycogen [starch] synthase
UDPG-glycogen synthetase
granule bound starch synthase I
granule-bound starch synthase 1
granule-bound starch synthase I
 6 Seed - Physiological traits - Dormancy
Biochemical character
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
 GO:0009501 - amyloplast
GO:0009408 - response to heat
GO:0019252 - starch biosynthetic process
GO:0009415 - response to water
GO:0009651 - response to salt stress
GO:0010229 - inflorescence development
GO:0009536 - plastid
GO:0009507 - chloroplast
GO:0005982 - starch metabolic process
GO:0009011 - starch synthase activity
GO:0009413 - response to flooding
GO:0048316 - seed development
GO:0009845 - seed germination
GO:0004373 - glycogen (starch) synthase activity
GO:0009568 - amyloplast starch grain
GO:0033840 - NDP-glucose-starch glucosyltransferase activity
 TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000396 - grain yield
TO:0002694 - fruit flavor trait
TO:0000382 - 1000-seed weight
TO:0000266 - chalky endosperm
TO:0000696 - starch content
TO:0000011 - nitrogen sensitivity
TO:0000259 - heat tolerance
TO:0000621 - inflorescence development trait
TO:0000286 - submergence sensitivity
TO:0006001 - salt tolerance
TO:0000237 - water stress trait
TO:0000162 - seed quality
TO:0000196 - amylose content
TO:0000098 - glutinous endosperm
 PO:0001170 - seed development stage
PO:0009010 - seed
PO:0007057 - 0 seed germination stage
PO:0007632 - seed maturation stage
PO:0001083 - inflorescence development stage
PO:0009089 - endosperm
PO:0007022 - seed imbibition stage
Os06g0133000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g04200.4
LOC_Os06g04200.3
LOC_Os06g04200.1
LOC_Os06g04200.2
image Id ( 6770 )
ALK alk
SSII-3
OsSSIIa
OsSSII-3
SSIIa
SSS2A
OsSSIIaChr6
SS2a
 ALKALI DEGENERATION alkali degeneration
ALKALI DEGENERATION
"Soluble starch synthase 2-3
chloroplast precursor"
"Soluble starch synthase 2-3
chloroplast"
"Soluble starch synthase 2-3
chloroplastic/amyloplastic"
Soluble starch synthase II-3
Starch synthase IIa
soluble starch synthase IIa
Starch synthase-IIa
Starch synthase IIa
 6 Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Seed - Physiological traits
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0009507 - chloroplast
GO:0009413 - response to flooding
GO:0010021 - amylopectin biosynthetic process
GO:0019252 - starch biosynthetic process
GO:0009501 - amyloplast
GO:0009011 - starch synthase activity
GO:0009536 - plastid
 TO:0000286 - submergence sensitivity
TO:0000462 - gelatinization temperature
TO:0000488 - seed composition based quality trait
TO:0000162 - seed quality
TO:0000379 - cool paste viscosity
TO:0000266 - chalky endosperm
TO:0000097 - amylopectin content
TO:0000134 - alkali digestion
 PO:0009010 - seed
PO:0009089 - endosperm
Os06g0229800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g12450.1
image Id ( 6773 )
XA13 xa13
Xa13
Os8N3
Os-8N3
8N3
OsSWEET11
SWEET11
OsSWEET11/Xa13
Xa13/Os8N3/SWEET11
Os8N3/Xa13
OsSWEET11/Os8N3
OsSWEET11a
SWEET11a
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 13 Xanthomonas oryzae pv. oryzae resistance 13
Xanthomonas campestris pv. oryzae resistance-13
Xanthomonas oryzae pv. oryzae resistance-13
sugar will eventually be exported transporter 11
 8 Tolerance and resistance - Disease resistance
Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0009555 - pollen development
GO:0005886 - plasma membrane
GO:0016021 - integral to membrane
GO:0005515 - protein binding
GO:0005982 - starch metabolic process
GO:0009960 - endosperm development
GO:0009617 - response to bacterium
GO:0010431 - seed maturation
GO:0009658 - chloroplast organization
GO:0008515 - sucrose transmembrane transporter activity
GO:0051119 - sugar transmembrane transporter activity
GO:0006952 - defense response
GO:0006825 - copper ion transport
GO:0009915 - phloem loading
GO:0010150 - leaf senescence
GO:0042742 - defense response to bacterium
GO:0009651 - response to salt stress
GO:0002237 - response to molecule of bacterial origin
GO:0034219 - carbohydrate transmembrane transport
GO:0015770 - sucrose transport
GO:0005887 - integral to plasma membrane
 TO:0000540 - leaf area
TO:0006001 - salt tolerance
TO:0000180 - spikelet fertility
TO:0000060 - aborted uni-nucleate stage
TO:0000175 - bacterial blight disease resistance
TO:0000575 - endosperm related trait
TO:0000696 - starch content
TO:0002661 - seed maturation
TO:0000249 - leaf senescence
TO:0000326 - leaf color
TO:0000371 - yield trait
TO:0000382 - 1000-seed weight
TO:0000391 - seed size
TO:0000421 - pollen fertility
TO:0000455 - seed set percent
 PO:0007632 - seed maturation stage
PO:0020020 - nucellus
PO:0020137 - leaf apex
PO:0008007 - nucellar projection
PO:0009066 - anther
PO:0008006 - nucellar epidermis
PO:0020128 - leaf margin
PO:0001054 - 4 leaf senescence stage
PO:0005360 - aleurone layer
Os08g0535200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g42350.1
ADH2 Adh2*
Adh2
OsADH2
 ALCOHOL DEHYDROGENASE 2 Alcohol dehydrogenase2
Alcohol dehydrogenase 2
Alcohol dehydrogenase-2
 11 Tolerance and resistance - Stress tolerance
Biochemical character
Character as QTL - Grain quality
 GO:0046686 - response to cadmium ion
GO:0004022 - alcohol dehydrogenase (NAD) activity
GO:0009505 - plant-type cell wall
GO:0018468 - alcohol dehydrogenase (acceptor) activity
GO:0019438 - aromatic compound biosynthetic process
GO:0055114 - oxidation reduction
GO:0000271 - polysaccharide biosynthetic process
GO:0001666 - response to hypoxia
GO:0010269 - response to selenium ion
GO:0009873 - ethylene mediated signaling pathway
GO:0009723 - response to ethylene stimulus
GO:0009413 - response to flooding
GO:0005737 - cytoplasm
GO:0008270 - zinc ion binding
 TO:0000173 - ethylene sensitivity
TO:0000114 - flooding related trait
TO:0000087 - aroma
TO:0000032 - selenium sensitivity
 Os11g0210500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g10510.2
LOC_Os11g10510.1
ADH1 Adh1
Adh1/2
adh1/adh2
OsADH1
 ALCOHOL DEHYDROGENASE 1 Alcohol dehydrogenase1
Alcohol dehydrogenase 1
Alcohol dehydrogenase-1
reduced adh activity
Alcohol dehydrogenase I
 11 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
 GO:0000271 - polysaccharide biosynthetic process
GO:0001666 - response to hypoxia
GO:0010269 - response to selenium ion
GO:0055114 - oxidation reduction
GO:0046686 - response to cadmium ion
GO:0009413 - response to flooding
GO:0019438 - aromatic compound biosynthetic process
GO:0004022 - alcohol dehydrogenase (NAD) activity
GO:0009505 - plant-type cell wall
GO:0005737 - cytoplasm
GO:0018468 - alcohol dehydrogenase (acceptor) activity
GO:0008270 - zinc ion binding
 TO:0000524 - submergence tolerance
TO:0000114 - flooding related trait
TO:0001007 - coleoptile length
TO:0000015 - oxygen sensitivity
TO:0000087 - aroma
TO:0000032 - selenium sensitivity
 Os11g0210300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g10480.4
LOC_Os11g10480.1
LOC_Os11g10480.2
D61 d61*
dwf42
d61
OsBRI1
OSBRI1
BRI1
Os BRI1
Osbri1
OsBRKq1
BRKq1
HFR131
OsHFR131
 DWARF 61 dm-type dwarf
dwarf-61
DWARF61
BRASSINOSTEROID INSENSITIVE 1
BR receptor BRASSINOSTEROID INSENSITIVE1
BRASSINOSTEROID-INSENSITIVE1
brassinosteroid insensitive 1
BR INSENSITIVE1
 1 Seed - Physiological traits - Storage substances
Biochemical character
Vegetative organ - Leaf
Seed - Morphological traits
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Character as QTL - Grain quality
 GO:0009742 - brassinosteroid mediated signaling
GO:0051607 - defense response to virus
GO:0050832 - defense response to fungus
GO:0005886 - plasma membrane
GO:0005524 - ATP binding
GO:0004903 - growth hormone receptor activity
GO:0004674 - protein serine/threonine kinase activity
GO:0001578 - microtubule bundle formation
GO:0006468 - protein amino acid phosphorylation
GO:0009647 - skotomorphogenesis
GO:0009729 - detection of brassinosteroid stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009734 - auxin mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid
GO:0009908 - flower development
GO:0010229 - inflorescence development
GO:0016049 - cell growth
 TO:0002677 - brassinosteroid sensitivity
TO:0000085 - leaf rolling
TO:0000734 - grain length
TO:0000590 - grain weight
TO:0000145 - internode length
TO:0002688 - leaf lamina joint bending
TO:0000447 - filled grain number
TO:0000172 - jasmonic acid sensitivity
TO:0000346 - tiller number
TO:0000357 - growth and development trait
TO:0000207 - plant height
TO:0000206 - leaf angle
TO:0000397 - grain size
TO:0000040 - panicle length
TO:0000576 - stem length
TO:0000396 - grain yield
TO:0000329 - tillering ability
TO:0000621 - inflorescence development trait
TO:0002730 - grain shape
TO:0000162 - seed quality
TO:0000411 - seed length to width ratio
TO:0002653 - endosperm storage protein content
TO:0000196 - amylose content
TO:0000266 - chalky endosperm
TO:0000020 - black streak dwarf virus resistance
TO:0000326 - leaf color
TO:0000255 - sheath blight disease resistance
 PO:0009049 - inflorescence
PO:0001083 - inflorescence development stage
PO:0020104 - leaf sheath
PO:0006347 - stem intercalary meristem
PO:0020033 - coleoptile
PO:0020142 - stem internode
PO:0009047 - stem
Os01g0718300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g52050.1
KO1 OsKO1
OSKO1
OSKOL1
OsKOS4
CYP701A7
 ENT-KAURENE OXIDASE 1 rice ent-kaurene oxidase1
cytochrome P450 701A7
 6 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
 GO:0004497 - monooxygenase activity
GO:0009055 - electron carrier activity
GO:0010241 - ent-kaurene oxidase activity
GO:0009651 - response to salt stress
GO:0009739 - response to gibberellin stimulus
GO:0009686 - gibberellin biosynthetic process
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 - heme binding
 TO:0000734 - grain length
TO:0006001 - salt tolerance
TO:0000399 - grain thickness
TO:0000402 - grain width
TO:0000166 - gibberellic acid sensitivity
TO:0000266 - chalky endosperm
TO:0002675 - gibberellic acid content
TO:0000397 - grain size
 Os06g0569900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g37330.1
qAAA-6-1 (qAAA6-1) qAAA-6-1 (qAAA6-1)
 amylose content (QTL)-6-1(t) amylose content (QTL)-6-1(t)
 Character as QTL - Grain quality
 -
qTAA-3-1 (qTAA5-1) qTAA-3-1 (qTAA5-1)
 total amylase activity (QTL)-5-1 total amylase activity (QTL)-5-1
 Character as QTL - Grain quality
 -
qTAA-3-1 (qTAA6-1) qTAA-3-1 (qTAA6-1)
 total amylase activity (QTL)-6-1 total amylase activity (QTL)-6-1
 Character as QTL - Grain quality
 -
KO5 OsKO5
OsKOL5
KOL5
KOS2
OsKOS2
CYP701A9
OsCYP701A9
OsKO1
KO1
 ENT-KAURENE OXIDASE 5 rice ent-kaurene oxidase5
cytochrome P450 701A9
 6 Tolerance and resistance - Disease resistance
Character as QTL - Grain quality
Vegetative organ - Culm
Biochemical character
 GO:0009753 - response to jasmonic acid stimulus
GO:0006952 - defense response
GO:0009628 - response to abiotic stimulus
GO:0051502 - diterpene phytoalexin biosynthetic process
GO:0010241 - ent-kaurene oxidase activity
GO:0009686 - gibberellin biosynthetic process
GO:0009055 - electron carrier activity
GO:0020037 - heme binding
GO:0010336 - gibberellic acid homeostasis
GO:0080006 - internode patterning
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0004497 - monooxygenase activity
GO:0009739 - response to gibberellin stimulus
 TO:0000266 - chalky endosperm
TO:0002675 - gibberellic acid content
TO:0000172 - jasmonic acid sensitivity
TO:0000145 - internode length
TO:0000112 - disease resistance
TO:0000166 - gibberellic acid sensitivity
 Os06g0568600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g37224.1
qBR-1(t) (br1) qBR-1(t) (br1)
 brown rice percentage (QTL)-1(t) brown rice percentage (QTL)-1(t)
 1 Character as QTL - Grain quality
 -
qBR-7(t) (br7) qBR-7(t) (br7)
 brown rice percentage (QTL)-7(t) brown rice percentage (QTL)-7(t)
 7 Character as QTL - Grain quality
 -
qBR-8(t) (br8) qBR-8(t) (br8)
 brown rice percentage (QTL)-8(t) brown rice percentage (QTL)-8(t)
 8 Character as QTL - Grain quality
 -
qHR-1-2(t) (hr1) qHR-1-2(t) (hr1)
 head rice grain (QTL)-1-2(t) head rice grain (QTL)-1-2(t)
 1 Character as QTL - Grain quality
 -
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