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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
GH3-8 OsGH3-8
OsMGH3
OsGH3.8
GH3.8
OsGH3-2
 GRETCHEN HAGEN 3 GENE 8 Gretchen Hagen 3 protein 8
 7 Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
 GO:0009863 - salicylic acid mediated signaling pathway
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009852 - auxin catabolic process
GO:0006955 - immune response
GO:0010279 - indole-3-acetic acid amido synthetase activity
GO:0016874 - ligase activity
GO:0009651 - response to salt stress
GO:0051607 - defense response to virus
GO:0009908 - flower development
 TO:0000172 - jasmonic acid sensitivity
TO:0000207 - plant height
TO:0000622 - flower development trait
TO:0000401 - plant growth hormone sensitivity
TO:0000346 - tiller number
TO:0006001 - salt tolerance
TO:0000020 - black streak dwarf virus resistance
TO:0002672 - auxin content
 PO:0009066 - anther
PO:0005052 - plant callus
PO:0008037 - seedling
PO:0009010 - seed
PO:0009049 - inflorescence
PO:0007615 - flower development stage
Os07g0592600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g40290.1
GID1 gid1
OsGID1
Thl
Os GID1
 GIBBERELLIN INSENSITIVE DWARF1 GIBBERELLIN-INSENSITIVE DWARF1
Gibberellin receptor GID1
Gibberellin-insensitive dwarf protein 1
Protein GIBBERELLIN INSENSITIVE DWARF1
Thumbelina
GA-insensitive dwarf 1
 5 Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
 GO:0004872 - receptor activity
GO:0010162 - seed dormancy
GO:0010271 - regulation of chlorophyll catabolic process
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0006109 - regulation of carbohydrate metabolic process
GO:0009740 - gibberellic acid mediated signaling
GO:0009737 - response to abscisic acid stimulus
GO:0014001 - sclerenchyma cell differentiation
GO:2000037 - regulation of stomatal complex patterning
GO:2000038 - regulation of stomatal complex development
GO:0008152 - metabolic process
GO:0005634 - nucleus
GO:0016787 - hydrolase activity
GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0009739 - response to gibberellin stimulus
GO:0009609 - response to symbiotic bacterium
 TO:0000566 - stomatal frequency
TO:0000286 - submergence sensitivity
TO:0000495 - chlorophyll content
TO:0000074 - blast disease
TO:0000135 - leaf length
TO:0000175 - bacterial blight disease resistance
TO:0000207 - plant height
TO:0000276 - drought tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000303 - cold tolerance
TO:0000253 - seed dormancy
TO:0000291 - carbohydrate content
TO:0000470 - vascular tissue related trait
 Os05g0407500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g33730.1
HSA32 Hsa32
OsHSA32
OsPPS1
 HEAT-STRESS-ASSOCIATED 32KD PROTEIN heat-stress-associated 32-kD protein
rice ortholog of Hsa32
Hsa32 homolog
phosphosulfolactate synthase 1
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0006950 - response to stress
GO:0004252 - serine-type endopeptidase activity
GO:0005618 - cell wall
GO:0010286 - heat acclimation
GO:0010608 - posttranscriptional regulation of gene expression
GO:0019295 - coenzyme M biosynthetic process
GO:0009408 - response to heat
 TO:0000259 - heat tolerance
 Os06g0682900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g46900.1
LOC_Os06g46900.2
LOC_Os06g46900.3
LOC_Os06g46900.4
HSP70-12 OsHSP70
HSP70
OsEnS-45
EnS-45
Hsp70-12
OsHsp70-12
 HEAT SHOCK PROTEIN 70-12 endosperm-specific gene 45
Heat shock protein 70-12
HEAT SHOCK PROTEIN 70KD
 3 Tolerance and resistance - Stress tolerance
 GO:0009408 - response to heat
GO:0003773 - heat shock protein activity
GO:0042026 - protein refolding
 TO:0000259 - heat tolerance
 Os03g0277300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g16920.1
NH1 OsNH1
OsNPR1
OsNPR1/NH1
NPR1
OsPR2
PR2
DLN5
OsDLN5
OsBTBA1
BTBA1
 NPR1 HOMOLOG 1 NPR1-like 1
NPR1 homologue 1
nonexpresser of PR genes 1
Arabidopsis NPR1 homolog 1
non-expressor of pathogenesis-related gene 1
Arabidopsis NPR1 homologue 1
pathogenesis-related gene 2
nonexpressor of PR genes 1
Nonexpressor of Pathogenesis-Related Genes1
NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1
NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1
non-expressor pathogenesis-related 1
NONEXPRESSOR OF PR1
DLN repressor 5
DLN motif protein 5
BTB-type E3 ubiquitin ligase A1
 1 Tolerance and resistance - Insect resistance
Vegetative organ - Culm
Tolerance and resistance - Lesion mimic
Character as QTL - Yield and productivity
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0010200 - response to chitin
GO:0009734 - auxin mediated signaling pathway
GO:0008219 - cell death
GO:0051607 - defense response to virus
GO:0005829 - cytosol
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009609 - response to symbiotic bacterium
GO:0006952 - defense response
GO:0048364 - root development
GO:0010942 - positive regulation of cell death
GO:0006950 - response to stress
GO:0031348 - negative regulation of defense response
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009625 - response to insect
GO:0016563 - transcription activator activity
GO:0009863 - salicylic acid mediated signaling pathway
GO:0002237 - response to molecule of bacterial origin
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0005634 - nucleus
GO:0002213 - defense response to insect
GO:0009814 - defense response, incompatible interaction
GO:0002215 - defense response to nematode
GO:0010112 - regulation of systemic acquired resistance
GO:0050832 - defense response to fungus
GO:0009682 - induced systemic resistance
GO:0009408 - response to heat
GO:0009611 - response to wounding
GO:0009627 - systemic acquired resistance
 TO:0000424 - brown planthopper resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000346 - tiller number
TO:0000255 - sheath blight disease resistance
TO:0000074 - blast disease
TO:0000181 - seed weight
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000112 - disease resistance
TO:0000401 - plant growth hormone sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000384 - nematode damage resistance
TO:0000656 - root development trait
TO:0000445 - seed number
TO:0000148 - viral disease resistance
TO:0000163 - auxin sensitivity
TO:0000063 - mimic response
 PO:0007089 - stem elongation stage
PO:0007520 - root development stage
Os01g0194300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g09800.1
NPP1 OsNPP1
OsPAP27b
PAP27B
 NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1 Nucleotide Pyrophosphatase/Phosphodiesterase 1
Purple acid phosphatase 27b
 8 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0001666 - response to hypoxia
GO:0004528 - phosphodiesterase I activity
GO:0046872 - metal ion binding
GO:0003993 - acid phosphatase activity
GO:0004551 - nucleotide diphosphatase activity
GO:0005618 - cell wall
 TO:0000233 - root volume
TO:0000207 - plant height
TO:0000015 - oxygen sensitivity
TO:0000696 - starch content
 Os08g0531000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g41880.1
NTRC OsNTRC
NtrC
OsGRL15
 CHLOROPLAST NADPH THIOREDOXIN REDUCTASE NADPH thioredoxin reductase
GRX-like protein 15
glutaredoxin-like protein 15
chloroplastic type NTR
chloroplastic type NADPH-dependent thioredoxin reductase
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0050660 - FAD binding
GO:0008047 - enzyme activator activity
GO:0009570 - chloroplast stroma
GO:0009507 - chloroplast
GO:0010027 - thylakoid membrane organization
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0010581 - regulation of starch biosynthetic process
GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0046686 - response to cadmium ion
GO:0045454 - cell redox homeostasis
GO:0022900 - electron transport chain
GO:0004791 - thioredoxin-disulfide reductase activity
GO:0016117 - carotenoid biosynthetic process
GO:0019430 - removal of superoxide radicals
GO:0042744 - hydrogen peroxide catabolic process
 TO:0002657 - oxidative stress
 Os07g0657900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g46410.1
ACO7 OsACO7
 AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7 ACC oxidase 7
1-Aminocyclopropane-1-carboxylate oxidase 7
 1 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0006970 - response to osmotic stress
GO:0046686 - response to cadmium ion
GO:0009737 - response to abscisic acid stimulus
GO:0009266 - response to temperature stimulus
GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0009693 - ethylene biosynthetic process
GO:0042742 - defense response to bacterium
GO:0009617 - response to bacterium
GO:0009651 - response to salt stress
 TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000095 - osmotic response sensitivity
TO:0000432 - temperature response trait
 PO:0009047 - stem
Os01g0580500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g39860.1
CIPK01 OsCIPK01
CIPK1
OsCIPK1
OsSnRK3.3
SnRK3.3
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1 CBL-interacting protein kinase 1
Sucrose nonfermenting-1-related protein kinase 3.3
 1 Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Biochemical character
Character as QTL - Yield and productivity
 GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0004713 - protein tyrosine kinase activity
GO:0030307 - positive regulation of cell growth
GO:0009740 - gibberellic acid mediated signaling
GO:0009413 - response to flooding
GO:0009651 - response to salt stress
GO:0030145 - manganese ion binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000382 - 1000-seed weight
TO:0000432 - temperature response trait
TO:0020033 - glume length
TO:0020034 - glume width
TO:0000734 - grain length
TO:0000207 - plant height
TO:0002675 - gibberellic acid content
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000396 - grain yield
TO:0000391 - seed size
TO:0000397 - grain size
TO:0000590 - grain weight
TO:0000114 - flooding related trait
 PO:0025034 - leaf
Os01g0292200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g18800.3
LOC_Os01g18800.4
LOC_Os01g18800.1
LOC_Os01g18800.2
LOC_Os01g18800.5
CIPK02 OsCIPK02
CIPK2
OsCIPK2
OsSnRK3.26
SnRK3.26
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2 CBL-interacting protein kinase 2
Sucrose nonfermenting-1-related protein kinase 3.26
 7 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Vegetative organ - Root
 GO:0015770 - sucrose transport
GO:0034219 - carbohydrate transmembrane transport
GO:0009409 - response to cold
GO:0009737 - response to abscisic acid stimulus
GO:0005524 - ATP binding
GO:0042128 - nitrate assimilation
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0031667 - response to nutrient levels
GO:0004674 - protein serine/threonine kinase activity
GO:0006995 - cellular response to nitrogen starvation
GO:0042594 - response to starvation
GO:0019740 - nitrogen utilization
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009651 - response to salt stress
GO:0044136 - development of symbiont on or near host rhizosphere
GO:0030145 - manganese ion binding
 TO:0000371 - yield trait
TO:0001027 - net photosynthetic rate
TO:0000495 - chlorophyll content
TO:0000644 - relative root dry weight
TO:0000636 - relative shoot dry weight
TO:0000455 - seed set percent
TO:0000152 - panicle number
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000291 - carbohydrate content
TO:0000011 - nitrogen sensitivity
TO:0000382 - 1000-seed weight
TO:0000449 - grain yield per plant
TO:0000128 - harvest index
 PO:0009005 - root
Os07g0678600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g48100.1
CIPK04 OsCIPK04
CIPK4
OsCIPK4
OsSnRK3.35
SnRK3.35
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4 CBL-interacting protein kinase 4
Sucrose nonfermenting-1-related protein kinase 3.35
 12 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os12g0603700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g41090.1
CIPK05 OsCIPK05
CIPK5
OsCIPK5
OsSTA7
OsSnRK3.2
SnRK3.2
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5 CBL-interacting protein kinase 5
Sucrose nonfermenting-1-related protein kinase 3.2
 1 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0042742 - defense response to bacterium
GO:0031348 - negative regulation of defense response
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
 TO:0000203 - bacterial leaf streak disease resistance
TO:0000114 - flooding related trait
TO:0000303 - cold tolerance
 PO:0009066 - anther
PO:0009049 - inflorescence
Os01g0206700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10890.1
CIPK06 OsCIPK06
CIPK6
OsCIPK6
OsSnRK3.28
SnRK3.28
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6 CBL-interacting protein kinase 6
Sucrose nonfermenting-1-related protein kinase 3.28
 8 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0007165 - signal transduction
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0009047 - stem
Os08g0441100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g34240.1
CIPK08 OsCIPK08
CIPK8
OsCIPK8
OsSnRK3.4
SnRK3.4
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8 CBL-interacting protein kinase 8
Sucrose nonfermenting-1-related protein kinase 3.4
 1 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
GO:0060359 - response to ammonium ion
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000114 - flooding related trait
 PO:0009047 - stem
PO:0009049 - inflorescence
Os01g0536000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g35184.2
LOC_Os01g35184.1
CIPK09 OsCIPK09
CIPK9
OsCIPK9
OsSnRK3.10
SnRK3.10
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9 CBL-interacting protein kinase 9
Sucrose nonfermenting-1-related protein kinase 3.10
 3 Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0060359 - response to ammonium ion
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000227 - root length
TO:0006001 - salt tolerance
 PO:0009005 - root
Os03g0126800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03510.2
LOC_Os03g03510.1
CIPK10 OsCIPK10
OsSnRK3.12
SnRK3.12
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10 CBL-interacting protein kinase 10
Sucrose nonfermenting-1-related protein kinase 3.12
 3 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0006468 - protein amino acid phosphorylation
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os03g0339900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g22050.3
LOC_Os03g22050.1
LOC_Os03g22050.2
LOC_Os03g22050.4
CIPK11 OsCIPK11
OsMSURPK2
MSURPK2
OsSnRK3.7
SnRK3.7
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11 CBL-interacting protein kinase 11
Sucrose nonfermenting-1-related protein kinase 3.7
 1 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0025034 - leaf
PO:0009047 - stem
Os01g0824600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g60910.1
LOC_Os01g60910.2
CIPK14 OsCIPK14
OsSnRK3.33
SnRK3.33
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14 CBL-interacting protein kinase 14
Sucrose nonfermenting-1-related protein kinase 3.33
 12 Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0050832 - defense response to fungus
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0009414 - response to water deprivation
GO:0009413 - response to flooding
GO:0060359 - response to ammonium ion
GO:0009409 - response to cold
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000255 - sheath blight disease resistance
TO:0000114 - flooding related trait
 PO:0009005 - root
Os12g0113500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g02200.1
LOC_Os12g02200.2
CIPK15 OsCIPK15
OsSnRK3.31
SnRK3.31
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15 CBL-interacting protein kinase 15
Sucrose nonfermenting-1-related protein kinase 3.31
Calcineurin B-like protein-interacting protein kinase 15
 11 Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0019722 - calcium-mediated signaling
GO:0042742 - defense response to bacterium
GO:0004674 - protein serine/threonine kinase activity
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0005524 - ATP binding
GO:0009413 - response to flooding
GO:0009651 - response to salt stress
GO:0009610 - response to symbiotic fungus
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000203 - bacterial leaf streak disease resistance
TO:0000276 - drought tolerance
TO:0000114 - flooding related trait
TO:0000175 - bacterial blight disease resistance
 PO:0009005 - root
Os11g0113700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g02240.1
CIPK16 OsCIPK16
OsSnRK3.29
SnRK3.29
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16 CBL-interacting protein kinase 16
Sucrose nonfermenting-1-related protein kinase 3.29
 9 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009005 - root
Os09g0418000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g25090.1
CIPK17 OsCIPK17
OsSnRK3.14
SnRK3.14
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17 CBL-interacting protein kinase 17
Sucrose nonfermenting-1-related protein kinase 3.14
 5 Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Character as QTL - Germination
Biochemical character
 GO:0046686 - response to cadmium ion
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0006952 - defense response
GO:0005737 - cytoplasm
GO:0009408 - response to heat
GO:0010187 - negative regulation of seed germination
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0030145 - manganese ion binding
 TO:0000112 - disease resistance
TO:0000259 - heat tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000352 - plant dry weight
TO:0000578 - root fresh weight
TO:0000227 - root length
TO:0000207 - plant height
 PO:0009005 - root
Os05g0136200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g04550.1
CIPK18 OsCIPK18
OsSnRK3.16
SnRK3.16
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18 CBL-interacting protein kinase 18
Sucrose nonfermenting-1-related protein kinase 3.16
 5 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0025034 - leaf
Os05g0332300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26820.1
PK4 OsCIPK19
OsPK4
OsPK04
Os-CIPK19
CIPK19
OsSnRK3.20
SnRK3.20
 PROTEIN KINASE 4 protein kinase 4
CBL-interacting protein kinase 19
CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 19
Sucrose nonfermenting-1-related protein kinase 3.20
 5 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0009651 - response to salt stress
GO:0009413 - response to flooding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000114 - flooding related trait
TO:0000276 - drought tolerance
 PO:0009010 - seed
PO:0009047 - stem
Os05g0514200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g43840.1
CIPK20 OsCIPK20
OsSnRK3.15
SnRK3.15
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20 CBL-interacting protein kinase 20
Sucrose nonfermenting-1-related protein kinase 3.15
 5 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009413 - response to flooding
 TO:0000114 - flooding related trait
 PO:0009049 - inflorescence
Os05g0208100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g11790.1
CIPK21 OsCIPK21
OsSnRK3.24
SnRK3.24
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21 CBL-interacting protein kinase 21
Sucrose nonfermenting-1-related protein kinase 3.24
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0007165 - signal transduction
GO:0006468 - protein amino acid phosphorylation
GO:0009536 - plastid
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0030145 - manganese ion binding
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
 PO:0009005 - root
Os07g0637000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g44290.1
CIPK22 OsCIPK22
OsSnRK3.17
SnRK3.17
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22 CBL-interacting protein kinase 22
Sucrose nonfermenting-1-related protein kinase 3.17
 5 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
 PO:0025034 - leaf
Os05g0334750 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26940.1
CIPK23 OsCIPK23
Os-CIPK23
OsSnRK3.23
SnRK3.23
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23 CBL-interacting protein kinase 23
CBL-Interacting Protein Kinase23
Sucrose nonfermenting-1-related protein kinase 3.23
 7 Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
GO:0006468 - protein amino acid phosphorylation
GO:0005739 - mitochondrion
GO:0005524 - ATP binding
GO:0050687 - negative regulation of defense response to virus
GO:0004674 - protein serine/threonine kinase activity
GO:0005634 - nucleus
GO:0009414 - response to water deprivation
GO:0060359 - response to ammonium ion
GO:0009651 - response to salt stress
 TO:0000276 - drought tolerance
TO:0000514 - potassium uptake
TO:0001034 - relative plant height
TO:0006001 - salt tolerance
TO:0000207 - plant height
TO:0000213 - rice grassy stunt 1 and 2 virus resistance
 PO:0009005 - root
Os07g0150700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g05620.2
LOC_Os07g05620.1
SOS2 CIPK24
OsCIPK24
OsSOS2
OsSnRK3.22
SnRK3.22
 SALT OVERLY SENSITIVE 2 CBL-interacting protein kinase 24
salt overly sensitive 2
low-cesium rice mutant 1
Sucrose nonfermenting-1-related protein kinase 3.22
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009705 - plant-type vacuole membrane
GO:0030145 - manganese ion binding
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009005 - root
PO:0009047 - stem
PO:0025034 - leaf
PO:0000025 - root tip
Os06g0606000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40370.1
CIPK25 OsCIPK25
OsSnRK3.21
SnRK3.21
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25 CBL-interacting protein kinase 25
Sucrose nonfermenting-1-related protein kinase 3.21
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os06g0543400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g35160.1
CIPK26 OsCIPK26
OsSnRK3.8
SnRK3.8
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26 CBL-interacting protein kinase 26
Sucrose nonfermenting-1-related protein kinase 3.8
 2 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os02g0161000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g06570.1
LOC_Os02g06570.2
CIPK27 OsCIPK27
OsSnRK3.30
SnRK3.30
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27 Putative CBL-interacting protein kinase 27
Sucrose nonfermenting-1-related protein kinase 3.30
 9 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
 PO:0009049 - inflorescence
Os09g0418500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g25100.1
LOC_Os09g25110.1
CIPK29 OsCIPK29
OsSnRK3.25
SnRK3.25
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29 CBL-interacting protein kinase 29
Sucrose nonfermenting-1-related protein kinase 3.25
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0009049 - inflorescence
Os07g0678300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g48090.1
CIPK30 OsCIPK30
OsSnRK3.5
SnRK3.5
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30 CBL-interacting protein kinase 30
Sucrose nonfermenting-1-related protein kinase 3.5
 1 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
 TO:0000114 - flooding related trait
 PO:0009049 - inflorescence
Os01g0759200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g55440.1
DMI3 OsDMI3
OsCCaMK1
OsCCaMK
OsCCAMK
CCAMK
 DOESN'T MAKE INFECTIONS 3 DOESN'T MAKE INFECTIONS3
calcium and calmodulin-dependent protein kinase 1
Ca2+/calmodulin (CaM)-dependent protein kinase
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE
 5 Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
 GO:0009610 - response to symbiotic fungus
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0009734 - auxin mediated signaling pathway
GO:0009651 - response to salt stress
GO:0048364 - root development
GO:0019722 - calcium-mediated signaling
GO:0010726 - positive regulation of hydrogen peroxide metabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0005524 - ATP binding
GO:0005509 - calcium ion binding
GO:0006979 - response to oxidative stress
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0010030 - positive regulation of seed germination
GO:0050832 - defense response to fungus
GO:0047484 - regulation of response to osmotic stress
GO:0006970 - response to osmotic stress
GO:0018107 - peptidyl-threonine phosphorylation
GO:0060267 - positive regulation of respiratory burst
GO:0030104 - water homeostasis
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0042542 - response to hydrogen peroxide
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0004683 - calmodulin-dependent protein kinase activity
GO:0043408 - regulation of MAPKKK cascade
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0009414 - response to water deprivation
GO:0016021 - integral to membrane
 TO:0000615 - abscisic acid sensitivity
TO:0000656 - root development trait
TO:0002657 - oxidative stress
TO:0000136 - relative water content
TO:0000074 - blast disease
TO:0000605 - hydrogen peroxide content
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000516 - relative root length
TO:0000276 - drought tolerance
TO:0002672 - auxin content
 PO:0007520 - root development stage
PO:0007057 - 0 seed germination stage
Os05g0489900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41090.1
HKT7 OsHKT7
OsHKT1;4
HKT1;4
 HIGH-AFFINITY K+ TRANSPORTER 7 Oryza sativa High-affinity K+ Transporter 7
Probable cation transporter HKT7
 4 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009741 - response to brassinosteroid stimulus
GO:0016021 - integral to membrane
GO:0005886 - plasma membrane
GO:0009651 - response to salt stress
GO:0030955 - potassium ion binding
GO:0031402 - sodium ion binding
GO:0055085 - transmembrane transport
GO:0034059 - response to anoxia
GO:0006814 - sodium ion transport
GO:0006813 - potassium ion transport
GO:0015079 - potassium ion transmembrane transporter activity
 TO:0006001 - salt tolerance
TO:0002677 - brassinosteroid sensitivity
 PO:0009006 - shoot system
PO:0020104 - leaf sheath
PO:0009047 - stem
PO:0009005 - root
Os04g0607600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g51830.1
HMA9 OsHMA9
oshma9-1
oshma9-2
HMA9
OsHMP33
HMP33
 HEAVY METAL ATPASE 9 Oryza sativa heavy metal ATPase 9
HEAVY METAL ATPASE 9
heavy metal P-Type ATPase 9
Heavy metal-associated protein 33
 6 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0043682 - copper-transporting ATPase activity
GO:0070574 - cadmium ion transmembrane transport
GO:0046688 - response to copper ion
GO:0015691 - cadmium ion transport
GO:0009873 - ethylene mediated signaling pathway
GO:0005794 - Golgi apparatus
GO:0016021 - integral to membrane
GO:0046873 - metal ion transmembrane transporter activity
GO:0010288 - response to lead ion
GO:0010043 - response to zinc ion
GO:0046686 - response to cadmium ion
GO:0016020 - membrane
GO:0010119 - regulation of stomatal movement
 TO:0000080 - micronutrient sensitivity
TO:0000351 - zinc sensitivity
TO:0000021 - copper sensitivity
 Os06g0665800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g45500.1
MADS51 OsMADS51
OsMADS65
MADS65
qHd1
DLN36
OsDLN36
 MADS BOX GENE 51 MADS box gene51
DLN repressor 36
DLN motif protein 36
 1 Character as QTL - Yield and productivity
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Seed - Morphological traits
Character as QTL - Plant growth activity
Other
Tolerance and resistance - Disease resistance
 GO:0003700 - transcription factor activity
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009408 - response to heat
GO:0050832 - defense response to fungus
GO:0009409 - response to cold
GO:0043565 - sequence-specific DNA binding
 TO:0000396 - grain yield
TO:0000259 - heat tolerance
TO:0000432 - temperature response trait
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0000449 - grain yield per plant
TO:0000152 - panicle number
TO:0000455 - seed set percent
TO:0000329 - tillering ability
TO:0000357 - growth and development trait
TO:0000074 - blast disease
TO:0000590 - grain weight
TO:0000303 - cold tolerance
 Os01g0922800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g69850.1
SDT miR156h
OsmiR156h
osmiR156h
osa-miR156h
osa-MIR156hosa-miR156h-3p osa-miR156h-5p
 SEMIDWARF AND HIGH-TILLERING micro RNA 156h
microRNA156h
osa-miRNA156h
semidwarf and high-tillering
 6 Tolerance and resistance - Stress tolerance
Other
Character as QTL - Yield and productivity
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
 GO:0007623 - circadian rhythm
GO:0050832 - defense response to fungus
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
GO:0035195 - gene silencing by miRNA
 TO:0000050 - inflorescence branching
TO:0000074 - blast disease
TO:0000207 - plant height
TO:0000329 - tillering ability
TO:0000068 - lodging incidence
TO:0000346 - tiller number
TO:0000396 - grain yield
 PO:0000009 - cultured plant callus
PO:0009005 - root
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
-
YUCCA1 OsYUCCA1
OsYUC1
YUC1
 YUCCA-LIKE GENE 1 (YUCCA-like gene)
 1 Tolerance and resistance - Disease resistance
Vegetative organ - Root
Character as QTL - Yield and productivity
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0010229 - inflorescence development
GO:0048364 - root development
GO:0009609 - response to symbiotic bacterium
GO:0051607 - defense response to virus
GO:0034059 - response to anoxia
GO:0009737 - response to abscisic acid stimulus
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0046686 - response to cadmium ion
GO:0046685 - response to arsenic
GO:0048830 - adventitious root development
GO:0009408 - response to heat
GO:0009414 - response to water deprivation
 TO:0000396 - grain yield
TO:0000031 - silicon sensitivity
TO:0000227 - root length
TO:0000020 - black streak dwarf virus resistance
TO:0000084 - root number
TO:0000656 - root development trait
TO:0000428 - callus induction
TO:0000615 - abscisic acid sensitivity
TO:0000447 - filled grain number
TO:0000259 - heat tolerance
TO:0000276 - drought tolerance
TO:0002672 - auxin content
TO:0000578 - root fresh weight
TO:0000621 - inflorescence development trait
TO:0001013 - lateral root number
TO:0000557 - secondary branch number
TO:0001006 - adventitious root number
TO:0000449 - grain yield per plant
 PO:0020103 - flag leaf
PO:0009105 - inflorescence branch meristem
Os01g0645400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g45760.1
LOC_Os01g45760.2
YUCCA3 OsYUCCA3
OsYUC3
YUC3
 YUCCA-LIKE GENE 3 (YUCCA-like gene)
 1 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004499 - flavin-containing monooxygenase activity
GO:0016491 - oxidoreductase activity
GO:0009609 - response to symbiotic bacterium
GO:0009629 - response to gravity
GO:0009851 - auxin biosynthetic process
 TO:0002693 - gravity response trait
 Os01g0732700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g53200.1
YUCCA4 OsYUCCA4
OsYUC4
YUC4
YUCCA6
OsYUCCA6
 YUCCA-LIKE GENE 4 (YUCCA-like gene)
 1 Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Biochemical character
 GO:0051707 - response to other organism
GO:0042594 - response to starvation
GO:0009793 - embryonic development ending in seed dormancy
GO:0009408 - response to heat
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0048653 - anther development
GO:0009901 - anther dehiscence
GO:0051607 - defense response to virus
 TO:0002672 - auxin content
TO:0000657 - spikelet anatomy and morphology trait
TO:0000148 - viral disease resistance
TO:0000259 - heat tolerance
TO:0000620 - embryo development trait
TO:0000615 - abscisic acid sensitivity
TO:0000189 - embryoless
 PO:0001035 - G anther dehiscence stage
PO:0009066 - anther
PO:0007631 - plant embryo stage
PO:0001004 - anther development stage
Os01g0224700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12490.1
YUCCA6 OsYUCCA6
OsYUC6
YUC6
 YUCCA-LIKE GENE 6 (YUCCA-like gene)
 7 Biochemical character
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0010262 - somatic embryogenesis
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0051607 - defense response to virus
GO:0009851 - auxin biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0002672 - auxin content
TO:0002693 - gravity response trait
TO:0000432 - temperature response trait
TO:0000020 - black streak dwarf virus resistance
 PO:0000423 - plant zygote
PO:0020148 - shoot apical meristem
PO:0025275 - procambium
PO:0005020 - vascular bundle
PO:0025127 - primordium
Os07g0437000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g25540.1
YUCCA7 OsYUCCA7
OsYUC7
OsYUC5
YUC5
YUC7
 YUCCA-LIKE GENE 7 (YUCCA-like gene)
 4 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Morphological traits - Embryo
 GO:0046686 - response to cadmium ion
GO:0010262 - somatic embryogenesis
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
 TO:0002693 - gravity response trait
 PO:0000423 - plant zygote
PO:0009005 - root
Os04g0128900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g03980.1
RBOHB rbohB
OsrbohB
Os rbohB
OsRbohB
OsNox1
Nox1
Os-RbohB
RbohB
OsRboh1
Rboh1
 RESPIRATORY BURST OXIDASE HOMOLOG B Respiratory Burst Oxidase Homolog B
Respiratory Burst Oxidase Homologue B
NADPH oxidase 1
 1 Biochemical character
Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility
Character as QTL - Germination
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
 GO:0009687 - abscisic acid metabolic process
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0009751 - response to salicylic acid stimulus
GO:0004601 - peroxidase activity
GO:0005509 - calcium ion binding
GO:0009408 - response to heat
GO:0009734 - auxin mediated signaling pathway
GO:0009845 - seed germination
GO:0006952 - defense response
GO:0009626 - plant-type hypersensitive response
GO:0030104 - water homeostasis
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0002238 - response to molecule of fungal origin
GO:0009753 - response to jasmonic acid stimulus
GO:0005886 - plasma membrane
GO:0010266 - response to vitamin B1
GO:0050832 - defense response to fungus
GO:0009737 - response to abscisic acid stimulus
GO:0043621 - protein self-association
GO:0009733 - response to auxin stimulus
GO:0050665 - hydrogen peroxide biosynthetic process
GO:0006970 - response to osmotic stress
GO:0009413 - response to flooding
GO:0048364 - root development
GO:0006979 - response to oxidative stress
GO:0016174 - NAD(P)H oxidase activity
GO:0002679 - respiratory burst during defense response
GO:0009738 - abscisic acid mediated signaling
GO:0016021 - integral to membrane
GO:0009566 - fertilization
GO:0010118 - stomatal movement
GO:0043020 - NADPH oxidase complex
GO:0042742 - defense response to bacterium
 TO:0000112 - disease resistance
TO:0000605 - hydrogen peroxide content
TO:0000175 - bacterial blight disease resistance
TO:0000656 - root development trait
TO:0002657 - oxidative stress
TO:0006002 - proline content
TO:0000276 - drought tolerance
TO:0000163 - auxin sensitivity
TO:0000074 - blast disease
TO:0000439 - fungal disease resistance
TO:0000136 - relative water content
TO:0000172 - jasmonic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000524 - submergence tolerance
TO:0006001 - salt tolerance
TO:0002667 - abscisic acid content
TO:0000095 - osmotic response sensitivity
TO:0000129 - false smut disease resistance
TO:0000520 - stomatal closure rate
TO:0000430 - germination rate
TO:0000382 - 1000-seed weight
 PO:0025034 - leaf
Os01g0360200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g25820.2
LOC_Os01g25820.1
FLO27 OsbZIP58
bZIP58
OsEnS-92
OsSMF1
SMF1
OsRISBZ1
RISBZ1/bZIP58
RISBZ1
OsFLO27
 FLOURY ENDOSPERM 27 bZIP transcription factor 58
rice seed b-Zipper 1
endosperm-specific gene 92
seed maturation factor 1
rice seed basic leucine zipper 1
RICE SEED bZIP1
 7 Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Other
 GO:0034976 - response to endoplasmic reticulum stress
GO:0009408 - response to heat
GO:0009845 - seed germination
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010581 - regulation of starch biosynthetic process
GO:0009960 - endosperm development
GO:0012501 - programmed cell death
GO:0010431 - seed maturation
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0030968 - endoplasmic reticulum unfolded protein response
 TO:0002653 - endosperm storage protein content
TO:0002661 - seed maturation
TO:0000104 - floury endosperm
TO:0000432 - temperature response trait
TO:0000259 - heat tolerance
TO:0002673 - amino acid content
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000402 - grain width
TO:0000734 - grain length
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0002656 - starch grain shape
TO:0000100 - shrunken endosperm
TO:0000487 - endosperm color
TO:0000490 - protein composition related trait
 PO:0007057 - 0 seed germination stage
PO:0007632 - seed maturation stage
PO:0009089 - endosperm
PO:0005360 - aleurone layer
PO:0007633 - endosperm development stage
Os07g0182000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g08420.1
RPBF OsDof3
OsDOF3
OsEnS-34
OsDof10
Dof10
OsDof-10
OsDOF1
DOF1
DOF3
OsRPBF
OsDOF7
 RICE PROLAMIN BOX BINDING FACTOR rice (Oryza sativa) prolamin box binding factor
pyrimidine box-binding protein
endosperm-specific gene 34
Dof zinc factor 10
Dof transcription factor 10
DNA BINDING WITH ONE FINGER 10
 2 Seed - Physiological traits - Storage substances
Tolerance and resistance
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Longevity
Seed - Physiological traits
 GO:0006952 - defense response
GO:0009651 - response to salt stress
GO:0008270 - zinc ion binding
GO:0009414 - response to water deprivation
GO:0010029 - regulation of seed germination
GO:0003677 - DNA binding
GO:0006979 - response to oxidative stress
GO:0006970 - response to osmotic stress
GO:0045449 - regulation of transcription
 TO:0000179 - biotic stress trait
TO:0006004 - raffinose content
TO:0002673 - amino acid content
TO:0000250 - vigor related trait
TO:0000276 - drought tolerance
TO:0000430 - germination rate
TO:0006001 - salt tolerance
TO:0002657 - oxidative stress
TO:0000095 - osmotic response sensitivity
 PO:0009010 - seed
PO:0001170 - seed development stage
Os02g0252400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15350.1
SCAMP1 Scamp1
OsSCAMP1
 SECRETORY CARRIER MEMBRANE PROTEIN 1 rice (Oryza sativa) homolog of animal SCAMP1
secretory carrier-associated membrane protein 1
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0005769 - early endosome
GO:0005886 - plasma membrane
GO:0006897 - endocytosis
GO:0006898 - receptor-mediated endocytosis
GO:0015031 - protein transport
GO:0016020 - membrane
GO:0016021 - integral to membrane
GO:0009651 - response to salt stress
GO:0006970 - response to osmotic stress
GO:0031410 - cytoplasmic vesicle
 TO:0006001 - salt tolerance
TO:0000095 - osmotic response sensitivity
 Os07g0564600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g37740.1
SDG714 OsSDG714
OsSET5
OsSUVH4
 SET DOMAIN GROUP PROTEIN 714 SET Domain Group Protein714
SET protein 5
SUVH Histone Methyltransferase 4
 1 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0005634 - nucleus
GO:0008270 - zinc ion binding
GO:0046686 - response to cadmium ion
GO:0005694 - chromosome
GO:0046974 - histone methyltransferase activity (H3-K9 specific)
GO:0042393 - histone binding
 Os01g0927000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g70220.1
TDR tdr
OsbHLH005
bHLH005
OsbHLH5
bhlh5
TDR1
OsTDR
OsTDR1
OsMYC5
MYC5
 TAPETUM DEGENERATION RETARDATION tapetum degeneration retardation
basic helix loop helix 5
basic/helix-loop-helix 5
Myelocytomatosis oncogene transcription factor 5
 2 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
 GO:0009555 - pollen development
GO:0009266 - response to temperature stimulus
GO:0010584 - pollen exine formation
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0048657 - tapetal cell differentiation
GO:0010234 - tapetal cell fate specification
GO:0030528 - transcription regulator activity
GO:0045449 - regulation of transcription
GO:0048653 - anther development
GO:0048658 - tapetal layer development
GO:0010208 - pollen wall assembly
GO:0003682 - chromatin binding
GO:0046983 - protein dimerization activity
GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048654 - anther morphogenesis
 TO:0000432 - temperature response trait
TO:0000437 - male sterility
TO:0000218 - pollen abortion type
 PO:0009066 - anther
PO:0001004 - anther development stage
PO:0009071 - anther wall tapetum
PO:0001007 - pollen development stage
PO:0009049 - inflorescence
Os02g0120500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g02820.1
UGP1 Ugp1
OsUgp1
UGP2
UGP3
 UDP-GLUCOSE PYROPHOSPHORYLASE 1 UDP-Glucose Pyrophosphorylase1
UDP-Glucose Pyrophosphorylase 1
UGPase 1
UGPase
UTP:glucose phosphate uridylyltransferase
 9 Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
 GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity
GO:0009555 - pollen development
GO:0042545 - cell wall modification
GO:0010238 - response to proline
GO:0009651 - response to salt stress
GO:0005886 - plasma membrane
GO:0048653 - anther development
GO:0046686 - response to cadmium ion
GO:0016036 - cellular response to phosphate starvation
GO:0070592 - cell wall polysaccharide biosynthetic process
GO:0052543 - callose deposition in cell wall
 TO:0000437 - male sterility
TO:0000034 - chromium sensitivity
 PO:0001007 - pollen development stage
PO:0009082 - spikelet floret
PO:0025281 - pollen
PO:0001004 - anther development stage
Os09g0553200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g38030.1
LOC_Os09g38030.2
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/rice/oryzabase