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CGSNL Gene Symbol	Gene symbol synonym(s)	CGSNL Gene Name	Gene name synonym(s)	Chr. No.	Trait Class	Gene Ontology	Trait Ontology	Plant Ontology	RAP ID	MSU ID
NH1	OsNH1 OsNPR1 OsNPR1/NH1 NPR1 OsPR2 PR2 DLN5 OsDLN5 OsBTBA1 BTBA1	NPR1 HOMOLOG 1	NPR1-like 1 NPR1 homologue 1 nonexpresser of PR genes 1 Arabidopsis NPR1 homolog 1 non-expressor of pathogenesis-related gene 1 Arabidopsis NPR1 homologue 1 pathogenesis-related gene 2 nonexpressor of PR genes 1 Nonexpressor of Pathogenesis-Related Genes1 NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1 NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 non-expressor pathogenesis-related 1 NONEXPRESSOR OF PR1 DLN repressor 5 DLN motif protein 5 BTB-type E3 ubiquitin ligase A1	1	Character as QTL - Yield and productivity Tolerance and resistance - Disease resistance Tolerance and resistance - Lesion mimic Tolerance and resistance - Insect resistance Vegetative organ - Culm Tolerance and resistance - Stress tolerance Vegetative organ - Root	GO:0010200 - response to chitin GO:0009734 - auxin mediated signaling pathway GO:0002215 - defense response to nematode GO:0010112 - regulation of systemic acquired resistance GO:0008219 - cell death GO:0006952 - defense response GO:0048364 - root development GO:0010942 - positive regulation of cell death GO:0006950 - response to stress GO:0031348 - negative regulation of defense response GO:0045893 - positive regulation of transcription, DNA-dependent GO:0009625 - response to insect GO:0016563 - transcription activator activity GO:0009863 - salicylic acid mediated signaling pathway GO:0002237 - response to molecule of bacterial origin GO:0005829 - cytosol GO:0042742 - defense response to bacterium GO:0009737 - response to abscisic acid stimulus GO:0009867 - jasmonic acid mediated signaling pathway GO:0009609 - response to symbiotic bacterium GO:0002213 - defense response to insect GO:0009814 - defense response, incompatible interaction GO:0050832 - defense response to fungus GO:0009682 - induced systemic resistance GO:0009408 - response to heat GO:0009611 - response to wounding GO:0009627 - systemic acquired resistance GO:0005634 - nucleus GO:0051607 - defense response to virus	TO:0000656 - root development trait TO:0000175 - bacterial blight disease resistance TO:0000445 - seed number TO:0000255 - sheath blight disease resistance TO:0000346 - tiller number TO:0000615 - abscisic acid sensitivity TO:0000384 - nematode damage resistance TO:0000424 - brown planthopper resistance TO:0000401 - plant growth hormone sensitivity TO:0000207 - plant height TO:0000163 - auxin sensitivity TO:0000074 - blast disease TO:0000063 - mimic response TO:0000172 - jasmonic acid sensitivity TO:0000148 - viral disease resistance TO:0000112 - disease resistance TO:0000181 - seed weight	PO:0007089 - stem elongation stage PO:0007520 - root development stage	Os01g0194300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g09800.1
HPL3	OsHPL3 CYP74B2 OsCYP74B2	HYDROPEROXIDE LYASE 3		2	Tolerance and resistance - Disease resistance Tolerance and resistance - Lesion mimic Biochemical character Tolerance and resistance - Insect resistance	GO:0042742 - defense response to bacterium GO:0002213 - defense response to insect GO:0009753 - response to jasmonic acid stimulus GO:0009055 - electron carrier activity GO:0016829 - lyase activity GO:0009695 - jasmonic acid biosynthetic process GO:0009867 - jasmonic acid mediated signaling pathway GO:0031407 - oxylipin metabolic process GO:0010597 - green leaf volatile biosynthetic process GO:0051607 - defense response to virus GO:0020037 - heme binding GO:0009941 - chloroplast envelope GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0004497 - monooxygenase activity GO:0005506 - iron ion binding GO:0009611 - response to wounding	TO:0000424 - brown planthopper resistance TO:0000175 - bacterial blight disease resistance TO:0000020 - black streak dwarf virus resistance TO:0000172 - jasmonic acid sensitivity TO:0002668 - jasmonic acid content TO:0000063 - mimic response TO:0000454 - stem borer resistance TO:0000396 - grain yield TO:0000148 - viral disease resistance		Os02g0110200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g02000.1
WAK125	OsWAK125 OsRLCK368 RLCK368 OsWAK-RLP	WALL-ASSOCIATED KINASE GENE 125	Receptor-like Cytoplasmic Kinase 368 OsWAK receptor-like protein OsWAK-RLP wall-associated receptor kinase 2	12	Biochemical character Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance	GO:0002215 - defense response to nematode GO:0004674 - protein serine/threonine kinase activity GO:0009414 - response to water deprivation GO:0016020 - membrane GO:0005509 - calcium ion binding GO:0030247 - polysaccharide binding	TO:0000276 - drought tolerance TO:0000384 - nematode damage resistance TO:0000043 - root anatomy and morphology trait		Os12g0478400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os12g29434.1 LOC_Os12g29430.1
CDPK21	OsCDPK21 OsCPK21 CPK21 CPK-21	CALCIUM-DEPENDENT PROTEIN KINASE 21	calcium-dependent protein kinase	8	Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance Biochemical character	GO:0009624 - response to nematode GO:0002215 - defense response to nematode GO:0031000 - response to caffeine GO:0004674 - protein serine/threonine kinase activity GO:0005509 - calcium ion binding GO:0005524 - ATP binding GO:0010857 - calcium-dependent protein kinase activity GO:0009651 - response to salt stress GO:0009737 - response to abscisic acid stimulus GO:0009409 - response to cold GO:0009555 - pollen development GO:0009556 - microsporogenesis	TO:0000218 - pollen abortion type TO:0000615 - abscisic acid sensitivity TO:0000303 - cold tolerance TO:0006001 - salt tolerance TO:0000384 - nematode damage resistance	PO:0004506 - developing seed stage PO:0001004 - anther development stage PO:0001007 - pollen development stage	Os08g0540400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g42750.1
qBPH11	Qbph11	brown planthopper resistance (QTL) 11	brown planthopper resistance QTL	11	Tolerance and resistance - Insect resistance				-
CHT9	Cht9 OsCht9 Cht1 OsChi19A Chi19A	CHITINASE 9	Chitinase9 Chitinase 9 Pathogenesis related (PR)-3 chitinase 9 Chitinase-9	5	Tolerance and resistance - Insect resistance Biochemical character	GO:0006032 - chitin catabolic process GO:0016023 - cytoplasmic membrane-bounded vesicle GO:0004568 - chitinase activity GO:0016998 - cell wall macromolecule catabolic process GO:0002215 - defense response to nematode GO:0006952 - defense response GO:0008061 - chitin binding GO:0009624 - response to nematode	TO:0000384 - nematode damage resistance		Os05g0399400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os05g33140.1
PT13	OsPT13 PHT1-13 OsPht1;13 ORYsa;PHT1;13	PHOSPHATE TRANSPORTER 13	Putative inorganic phosphate transporter 1-13 PHOSPHATE TRANSPORTER1;13	4	Biochemical character Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance	GO:0009733 - response to auxin stimulus GO:0016020 - membrane GO:0006817 - phosphate transport GO:0015293 - symporter activity GO:0055085 - transmembrane transport GO:0042594 - response to starvation GO:0002213 - defense response to insect GO:0016021 - integral to membrane GO:0005886 - plasma membrane GO:0009737 - response to abscisic acid stimulus GO:0009735 - response to cytokinin stimulus GO:0009739 - response to gibberellin stimulus	TO:0000167 - cytokinin sensitivity TO:0000166 - gibberellic acid sensitivity TO:0000102 - phosphorus sensitivity TO:0000163 - auxin sensitivity TO:0000424 - brown planthopper resistance TO:0000615 - abscisic acid sensitivity	PO:0020103 - flag leaf	Os04g0186800 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g10800.1
DCL3A	OsDCL3a	DICER-LIKE 3A	Endoribonuclease Dicer homolog 3a Dicer-like protein 3a	1	Tolerance and resistance - Disease resistance Reproductive organ - Inflorescence Vegetative organ - Leaf Biochemical character Tolerance and resistance - Insect resistance Vegetative organ - Culm	GO:0005524 - ATP binding GO:0006396 - RNA processing GO:0030145 - manganese ion binding GO:0009723 - response to ethylene stimulus GO:0000287 - magnesium ion binding GO:0003677 - DNA binding GO:0003723 - RNA binding GO:0004525 - ribonuclease III activity GO:0031047 - gene silencing by RNA GO:0009873 - ethylene mediated signaling pathway GO:0009867 - jasmonic acid mediated signaling pathway GO:0004386 - helicase activity GO:0009627 - systemic acquired resistance GO:0050832 - defense response to fungus GO:0002215 - defense response to nematode GO:0009753 - response to jasmonic acid stimulus GO:0005634 - nucleus	TO:0000074 - blast disease TO:0000173 - ethylene sensitivity TO:0002667 - abscisic acid content TO:0000207 - plant height TO:0000124 - flag leaf angle TO:0000172 - jasmonic acid sensitivity TO:0000557 - secondary branch number TO:0000384 - nematode damage resistance		Os01g0909200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g68120.1
F3'H	OsF3'H OsCYP75B3 CYP75B3 OsF3'H10 F3'H10 OsCYP71P3 CYP71P3	FLAVONOID 3'-HYDROXYLASE	sativa flavonoid 3'-hydroxylase Flavanone 3'-hydroxylase P-450 75B3 Cytochrome P450 75B3 flavonoid 3'-monooxygenase flavonoid 3'-hydroxylase 10	10	Seed Coloration - Anthocyanin Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance Seed - Morphological traits Biochemical character Tolerance and resistance - Disease resistance	GO:0002213 - defense response to insect GO:0004497 - monooxygenase activity GO:0005506 - iron ion binding GO:0009718 - anthocyanin biosynthetic process GO:0005634 - nucleus GO:0016020 - membrane GO:0009408 - response to heat GO:0009813 - flavonoid biosynthetic process GO:0045486 - naringenin 3-dioxygenase activity GO:0048316 - seed development GO:0009753 - response to jasmonic acid stimulus GO:0050832 - defense response to fungus GO:0020037 - heme binding GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016021 - integral to membrane	TO:0000653 - seed development trait TO:0000259 - heat tolerance TO:0000071 - anthocyanin content TO:0000074 - blast disease TO:0000172 - jasmonic acid sensitivity TO:0000424 - brown planthopper resistance	PO:0001170 - seed development stage	Os10g0320100 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os10g17260.1
LSI6	Lsi6 OsNIP2;2 NIP2-2 OsLsi6 OsNIP2.2/OsLsi6 OsNIP2.2 NIP2.2	LOW SILICON RICE 6	Low silicon rice 6 Aquaporin NIP2-2 NOD26-like intrinsic protein 2-2	6	Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance Seed - Physiological traits - Storage substances	GO:0005215 - transporter activity GO:0016020 - membrane GO:0016021 - integral to membrane GO:0032523 - silicon efflux transmembrane transporter activity GO:0046873 - metal ion transmembrane transporter activity GO:0010232 - vascular transport GO:0030001 - metal ion transport GO:0051207 - silicic acid transport GO:0055085 - transmembrane transport GO:0015104 - antimonite transmembrane transporter activity GO:0046685 - response to arsenic GO:0042594 - response to starvation GO:0010035 - response to inorganic substance	TO:0000031 - silicon sensitivity TO:0000007 - sulfur sensitivity	PO:0025348 - phyllome lamina vein PO:0005352 - xylem PO:0000074 - parenchyma cell PO:0005020 - vascular bundle PO:0020138 - leaf lamina vein PO:0020141 - stem node	Os06g0228200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g12310.1
HOX17	Oshox17 OsHox17 OsHDZ15 OsHDZIP15 HDZ15 HDZIP15	HOMEOBOX GENE 17	rice homeobox gene 17 Homeobox-leucine zipper protein HOX17 Homeodomain transcription factor HOX17 HD-ZIP protein HOX17 homeodomain-leucine zipper transcription factor 15 OsHDZIP transcription factor 15	4	Other Tolerance and resistance - Insect resistance	GO:0002213 - defense response to insect GO:0003700 - transcription factor activity GO:0006350 - transcription GO:0005634 - nucleus GO:0043565 - sequence-specific DNA binding GO:0006355 - regulation of transcription, DNA-dependent	TO:0000261 - insect damage resistance TO:0000424 - brown planthopper resistance		Os04g0548700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g46350.1
HOX20	Oshox20 OsHox20 OsHDZ28 OsHDZIP28 HDZ28 HDZIP28	HOMEOBOX GENE 20	rice homeobox gene 20 Homeobox-leucine zipper protein HOX20 Homeodomain transcription factor HOX20 HD-ZIP protein HOX20 homeodomain-leucine zipper transcription factor 28 OsHDZIP transcription factor 28	8	Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance Other	GO:0009753 - response to jasmonic acid stimulus GO:0043565 - sequence-specific DNA binding GO:0003700 - transcription factor activity GO:0006355 - regulation of transcription, DNA-dependent GO:0009651 - response to salt stress GO:0006350 - transcription GO:0002213 - defense response to insect GO:0005737 - cytoplasm GO:0005634 - nucleus	TO:0006001 - salt tolerance TO:0000261 - insect damage resistance TO:0000172 - jasmonic acid sensitivity TO:0000424 - brown planthopper resistance	PO:0009047 - stem PO:0009005 - root PO:0025034 - leaf PO:0009049 - inflorescence PO:0009030 - carpel PO:0009009 - plant embryo	Os08g0481400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g37580.1
HOX21	Oshox21 OsHox21 OsHDZ10 OsHDZIP10 HDZ10 HDZIP10	HOMEOBOX GENE 21	rice homeobox gene 21 Homeobox-leucine zipper protein HOX21 Homeodomain transcription factor HOX21 HD-ZIP protein HOX21 homeodomain-leucine zipper transcription factor 10 OsHDZIP transcription factor 10	3	Other Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance	GO:0009753 - response to jasmonic acid stimulus GO:0002213 - defense response to insect GO:0009651 - response to salt stress GO:0005634 - nucleus GO:0003700 - transcription factor activity GO:0006355 - regulation of transcription, DNA-dependent GO:0043565 - sequence-specific DNA binding GO:0009741 - response to brassinosteroid stimulus GO:0006350 - transcription	TO:0000454 - stem borer resistance TO:0006001 - salt tolerance TO:0002677 - brassinosteroid sensitivity TO:0000172 - jasmonic acid sensitivity TO:0000424 - brown planthopper resistance TO:0000403 - leaf-folder resistance TO:0000261 - insect damage resistance		Os03g0170600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g07450.1
HOX26	Oshox26 OsHDZ4 OsHDZIP4 HDZ4 HDZIP4	HOMEOBOX GENE 26	rice homeobox gene 26 Putative homeobox-leucine zipper protein HOX26 Homeodomain transcription factor HOX26 HD-ZIP protein HOX26 homeodomain-leucine zipper transcription factor 4 OsHDZIP transcription factor 4	2	Tolerance and resistance - Insect resistance Other	GO:0002213 - defense response to insect GO:0043565 - sequence-specific DNA binding GO:0003700 - transcription factor activity GO:0006355 - regulation of transcription, DNA-dependent GO:0009536 - plastid GO:0005634 - nucleus GO:0006350 - transcription	TO:0000403 - leaf-folder resistance TO:0000454 - stem borer resistance TO:0000424 - brown planthopper resistance TO:0000261 - insect damage resistance		Os02g0149900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g05640.1
HOX33	Oshox33 OsHox33 OSHB3 HB3 SIP22 OsSIP22 OsHDZ40 OsHDZIP40 HDZ40 HDZIP40	HOMEOBOX GENE 33	rice homeobox gene 33 Homeobox-leucine zipper protein HOX33 Homeodomain transcription factor HOX33 HD-ZIP protein HOX33 HOMEODOMAIN CONTAINING PROTEIN 3 SKIP interacting protein 22 SKIPa-interacting protein 22 SKIPa-interacting protein 22 homeodomain-leucine zipper transcription factor 40 OsHDZIP transcription factor 40	12	Other Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance	GO:0006350 - transcription GO:0043565 - sequence-specific DNA binding GO:0009753 - response to jasmonic acid stimulus GO:0002213 - defense response to insect GO:0009651 - response to salt stress GO:0003700 - transcription factor activity GO:0005634 - nucleus GO:0006355 - regulation of transcription, DNA-dependent GO:0005886 - plasma membrane	TO:0000172 - jasmonic acid sensitivity TO:0006001 - salt tolerance TO:0000261 - insect damage resistance TO:0000424 - brown planthopper resistance	PO:0025034 - leaf PO:0009089 - endosperm PO:0009049 - inflorescence PO:0009005 - root	Os12g0612700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os12g41860.1
HOX9	Oshox9 OsHox9 OsHB2 HB2 OSHB2 OsHDZ37 OsHDZIP37 HDZ37 HDZIP37	HOMEOBOX GENE 9	rice homeobox gene 9 Homeobox-leucine zipper protein HOX9 Homeodomain transcription factor HOX9 HD-ZIP protein HOX9 HOMEODOMAIN CONTAINING PROTEIN 2 homeodomain-leucine zipper transcription factor 37 OsHDZIP transcription factor 37	10	Other Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance	GO:0002213 - defense response to insect GO:0009651 - response to salt stress GO:0005737 - cytoplasm GO:0003677 - DNA binding GO:0003700 - transcription factor activity GO:0006350 - transcription GO:0009753 - response to jasmonic acid stimulus GO:0043565 - sequence-specific DNA binding GO:0006355 - regulation of transcription, DNA-dependent GO:0005634 - nucleus	TO:0000261 - insect damage resistance TO:0000172 - jasmonic acid sensitivity TO:0006001 - salt tolerance TO:0000424 - brown planthopper resistance	PO:0009030 - carpel PO:0025034 - leaf PO:0009089 - endosperm PO:0009049 - inflorescence PO:0009005 - root PO:0009047 - stem	Os10g0480200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os10g33960.4 LOC_Os10g33960.3 LOC_Os10g33960.2 LOC_Os10g33960.1
MIR159A	miR159a osa-miR159a osa-MIR159a OsmiR159a OsmiR159a.2 miR159a.2 OsmiR159a.1 miR159a.1 osa-miR159a.1 osa-miR159a.2	MICRORNA159A		1	Tolerance and resistance - Insect resistance Seed - Morphological traits Reproductive organ - Spikelet, flower, glume, awn Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Reproductive organ - Pollination, fertilization, fertility Vegetative organ - Culm Tolerance and resistance - Disease resistance Other Seed - Physiological traits - Storage substances	GO:0009409 - response to cold GO:0050832 - defense response to fungus GO:0035195 - gene silencing by miRNA GO:0035068 - micro-ribonucleoprotein complex GO:0002213 - defense response to insect GO:0048443 - stamen development GO:0048316 - seed development GO:0016442 - RNA-induced silencing complex GO:0006379 - mRNA cleavage GO:0009555 - pollen development	TO:0000074 - blast disease TO:0000734 - grain length TO:0000342 - panicle axis angle TO:0000424 - brown planthopper resistance TO:0000485 - sterility related trait TO:0000207 - plant height TO:0006032 - panicle size TO:0000653 - seed development trait TO:0000371 - yield trait TO:0000053 - pollen sterility TO:0000187 - anther color TO:0000447 - filled grain number TO:0000303 - cold tolerance TO:0000696 - starch content	PO:0001007 - pollen development stage PO:0001170 - seed development stage	Os01g0507000 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g32259.1
GSL1	OsGSL1 CalS10 OsCalS10 OsGSL10 GSL10	BETA-1,3-GLUCANASE ACTIVITY 1	Oryza sativa callose synthase 1 callose synthase 1	6	Tolerance and resistance - Insect resistance Biochemical character Tolerance and resistance - Disease resistance	GO:0006075 - 1,3-beta-glucan biosynthetic process GO:0051607 - defense response to virus GO:0052542 - callose deposition during defense response GO:0000148 - 1,3-beta-glucan synthase complex GO:0010266 - response to vitamin B1 GO:0016021 - integral to membrane GO:0003843 - 1,3-beta-glucan synthase activity GO:0051592 - response to calcium ion GO:0002213 - defense response to insect GO:0033903 - endo-1,3(4)-beta-glucanase activity	TO:0000424 - brown planthopper resistance TO:0000006 - calcium sensitivity TO:0000148 - viral disease resistance	PO:0009066 - anther PO:0009005 - root PO:0025034 - leaf	Os06g0112800 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g02260.1 LOC_Os06g02260.2
GSL3	OsGSL3 CalS12 OsCalS12 OsGSL12 GSL12	BETA-1,3-GLUCANASE ACTIVITY 3	Oryza sativa callose synthase 3 callose synthase 3	1	Tolerance and resistance - Insect resistance Biochemical character	GO:0002213 - defense response to insect GO:0051592 - response to calcium ion GO:0003843 - 1,3-beta-glucan synthase activity GO:0016021 - integral to membrane GO:0006075 - 1,3-beta-glucan biosynthetic process GO:0000148 - 1,3-beta-glucan synthase complex	TO:0000006 - calcium sensitivity TO:0000424 - brown planthopper resistance		Os01g0754200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g55040.1
GAMYBL2	OsGAMYBL2 Os2R_MYB40 2R_MYB40 MYB2-45 OsMYB2-45	GAMYB-LIKE 2	R2R3-MYB Transcription Factor 40 R2R3-MYB transcription factor 2-45	3	Other Character as QTL - Plant growth activity Seed - Morphological traits - Grain shape Tolerance and resistance - Insect resistance Character as QTL - Yield and productivity	GO:0009908 - flower development GO:0009742 - brassinosteroid mediated signaling GO:0005634 - nucleus GO:0002213 - defense response to insect GO:0010476 - gibberellin-mediated signaling	TO:0000397 - grain size TO:0000357 - growth and development trait TO:0000424 - brown planthopper resistance		Os03g0578900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g38210.1
OPR1	OsOPR1 OsOPR2 OsOPR11 OsOPR06-6 OPDAR1 OsOPR OPDAR	12-OXOPHYTODIENOATE REDUCTASE 1	12-oxo-phytodienoic acid reductase 1 OPDA reductase	6	Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance Tolerance and resistance - Insect resistance Biochemical character	GO:0009408 - response to heat GO:0016629 - 12-oxophytodienoate reductase activity GO:0009695 - jasmonic acid biosynthetic process GO:0002215 - defense response to nematode GO:0006952 - defense response GO:0009266 - response to temperature stimulus GO:0050832 - defense response to fungus GO:0009651 - response to salt stress GO:0010181 - FMN binding GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance TO:0000259 - heat tolerance TO:0002668 - jasmonic acid content TO:0006001 - salt tolerance TO:0000432 - temperature response trait TO:0000384 - nematode damage resistance TO:0000074 - blast disease	PO:0009051 - spikelet	Os06g0216300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g11290.1
OPR2	OsOPR2 OsOPR06-5	12-OXOPHYTODIENOATE REDUCTASE 2	12-oxo-phytodienoic acid reductase 2	6	Biochemical character Tolerance and resistance - Insect resistance	GO:0016629 - 12-oxophytodienoate reductase activity GO:0002215 - defense response to nematode GO:0031408 - oxylipin biosynthetic process GO:0010181 - FMN binding GO:0016491 - oxidoreductase activity	TO:0000384 - nematode damage resistance		Os06g0216200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g11280.1
OPR5	OsOPR5 OsOPR6 OsOPR06-2 OPR4	12-OXOPHYTODIENOATE REDUCTASE 5	12-oxo-phytodienoic acid reductase 5	6	Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance Biochemical character	GO:0016629 - 12-oxophytodienoate reductase activity GO:0009695 - jasmonic acid biosynthetic process GO:0016491 - oxidoreductase activity GO:0010181 - FMN binding GO:0009651 - response to salt stress GO:0009266 - response to temperature stimulus GO:0050832 - defense response to fungus GO:0031408 - oxylipin biosynthetic process GO:0002215 - defense response to nematode	TO:0000432 - temperature response trait TO:0000384 - nematode damage resistance TO:0006001 - salt tolerance TO:0000074 - blast disease		Os06g0215600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g11210.1
OG1	OsOPR7 OPR7 OsOPR13 OsOPR3 OsOPR5 OsOPR9 OsOPR08-1 OPR13 OPR3 OPR5 OPR9 OPR08-1 OsOPR8 OPR8	OPEN GLUME1	12-oxo-phytodienoic acid reductase 7 12-oxophytodienoate reductase7 OPDA reductase 7 open glume 1	8	Reproductive organ - Spikelet, flower, glume, awn Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance Tolerance and resistance - Insect resistance Biochemical character Character as QTL - Yield and productivity	GO:0009695 - jasmonic acid biosynthetic process GO:0002213 - defense response to insect GO:0009828 - plant-type cell wall loosening GO:0010181 - FMN binding GO:0050832 - defense response to fungus GO:0052541 - plant-type cell wall cellulose metabolic process GO:0008643 - carbohydrate transport GO:0016629 - 12-oxophytodienoate reductase activity GO:0002215 - defense response to nematode GO:0009867 - jasmonic acid mediated signaling pathway GO:0007623 - circadian rhythm GO:0005777 - peroxisome GO:0009737 - response to abscisic acid stimulus GO:0051607 - defense response to virus	TO:0000615 - abscisic acid sensitivity TO:0000424 - brown planthopper resistance TO:0000184 - seed anatomy and morphology trait TO:0000696 - starch content TO:0000074 - blast disease TO:0000020 - black streak dwarf virus resistance TO:0002668 - jasmonic acid content TO:0000396 - grain yield TO:0000447 - filled grain number TO:0006009 - lodicule anatomy and morphology trait TO:0000384 - nematode damage resistance TO:0002616 - flowering time TO:0000269 - 100-seed weight	PO:0025034 - leaf PO:0009039 - glume PO:0007616 - flowering stage PO:0009036 - lodicule PO:0009047 - stem	Os08g0459600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os08g35740.2 LOC_Os08g35740.1
AOS2	OsAOS2 CYP74A2 OsAOS OsAOS1	ALLENE OXIDE SYNTHASE 2	Allene oxide synthase 2 Cytochrome P450 74A2 Hydroperoxide dehydrase 2 allene oxide synthase-1	3	Tolerance and resistance - Stress tolerance Biochemical character Tolerance and resistance - Insect resistance Tolerance and resistance - Disease resistance Tolerance and resistance	GO:0009055 - electron carrier activity GO:0051607 - defense response to virus GO:0047987 - hydroperoxide dehydratase activity GO:0046686 - response to cadmium ion GO:0031408 - oxylipin biosynthetic process GO:0051365 - cellular response to potassium ion starvation GO:0050832 - defense response to fungus GO:0009867 - jasmonic acid mediated signaling pathway GO:0002221 - pattern recognition receptor signaling pathway GO:0010106 - cellular response to iron ion starvation GO:0046685 - response to arsenic GO:0080027 - response to herbivore GO:0002237 - response to molecule of bacterial origin GO:0042594 - response to starvation GO:0009753 - response to jasmonic acid stimulus GO:0016036 - cellular response to phosphate starvation GO:0042742 - defense response to bacterium GO:0009695 - jasmonic acid biosynthetic process GO:0002215 - defense response to nematode GO:0002213 - defense response to insect GO:0020037 - heme binding GO:0004497 - monooxygenase activity	TO:0000172 - jasmonic acid sensitivity TO:0000224 - iron sensitivity TO:0000384 - nematode damage resistance TO:0000644 - relative root dry weight TO:0000020 - black streak dwarf virus resistance TO:0000516 - relative root length TO:0000102 - phosphorus sensitivity TO:0000008 - potassium sensitivity TO:0000424 - brown planthopper resistance TO:0000074 - blast disease TO:0000636 - relative shoot dry weight TO:0000175 - bacterial blight disease resistance TO:0000261 - insect damage resistance TO:0002668 - jasmonic acid content TO:0000356 - brown spot disease resistance TO:0001034 - relative plant height TO:0000615 - abscisic acid sensitivity TO:0000031 - silicon sensitivity	PO:0020142 - stem internode PO:0020141 - stem node PO:0020122 - inflorescence axis PO:0009051 - spikelet	Os03g0225900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g12500.1
AOC	OsAOC AOC1 OsAOC1 HB CPM2 OsAOC4 AOC4	ALLENE OXIDE CYCLASE	allene oxide cyclase coleoptile photomorphogenesis 2 hebiba hebibaAOC	3	Tolerance and resistance - Disease resistance Biochemical character Tolerance and resistance - Stress tolerance Reproductive organ - Pollination, fertilization, fertility Tolerance and resistance - Insect resistance Tolerance and resistance Character as QTL - Plant growth activity Vegetative organ - Leaf	GO:0080141 - regulation of jasmonic acid biosynthetic process GO:0009408 - response to heat GO:0009409 - response to cold GO:0009867 - jasmonic acid mediated signaling pathway GO:0016853 - isomerase activity GO:0050832 - defense response to fungus GO:0009611 - response to wounding GO:0009695 - jasmonic acid biosynthetic process GO:0009941 - chloroplast envelope GO:0005886 - plasma membrane GO:0009414 - response to water deprivation GO:0009620 - response to fungus GO:0009753 - response to jasmonic acid stimulus GO:0009269 - response to desiccation GO:0002215 - defense response to nematode GO:0009617 - response to bacterium GO:0010319 - stromule GO:0009570 - chloroplast stroma GO:0009535 - chloroplast thylakoid membrane GO:0009651 - response to salt stress GO:0046423 - allene-oxide cyclase activity GO:0002213 - defense response to insect	TO:0000544 - mesocotyl length TO:0000403 - leaf-folder resistance TO:0001007 - coleoptile length TO:0000227 - root length TO:0000074 - blast disease TO:0000357 - growth and development trait TO:0000384 - nematode damage resistance TO:0000172 - jasmonic acid sensitivity TO:0000485 - sterility related trait TO:0002668 - jasmonic acid content TO:0006001 - salt tolerance TO:0000129 - false smut disease resistance TO:0000424 - brown planthopper resistance TO:0000290 - flavonoid content TO:0000259 - heat tolerance TO:0000276 - drought tolerance TO:0000112 - disease resistance TO:0000207 - plant height	PO:0009051 - spikelet	Os03g0438100 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g32314.1
LOX-L2	OsLOX-L2 LOX1.1 LOX L-2 LOX-2 OsLOX2 LOX2	LIPOXYGENASE L2	Lipoxygenase 2 Lipoxygenase L-2	3	Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance Biochemical character Seed - Morphological traits - Embryo Character as QTL - Germination Tolerance and resistance - Disease resistance Seed - Physiological traits - Longevity	GO:0009793 - embryonic development ending in seed dormancy GO:0055114 - oxidation reduction GO:0031408 - oxylipin biosynthetic process GO:0050832 - defense response to fungus GO:0009266 - response to temperature stimulus GO:0010030 - positive regulation of seed germination GO:0009737 - response to abscisic acid stimulus GO:0005737 - cytoplasm GO:0002213 - defense response to insect GO:0051707 - response to other organism GO:0016165 - lipoxygenase activity GO:0009753 - response to jasmonic acid stimulus GO:0009816 - defense response to bacterium, incompatible interaction GO:0009611 - response to wounding GO:0009507 - chloroplast GO:0005506 - iron ion binding GO:0048364 - root development	TO:0000172 - jasmonic acid sensitivity TO:0000620 - embryo development trait TO:0000435 - seed longevity TO:0000403 - leaf-folder resistance TO:0000432 - temperature response trait TO:0000074 - blast disease	PO:0007057 - 0 seed germination stage PO:0007631 - plant embryo stage PO:0009047 - stem PO:0009005 - root PO:0009049 - inflorescence	Os03g0738600 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g52860.1
R9-LOX1	Osr9-LOX1 OsLOX3 LOX3	R9-LIPOXYGENASE 1	9-lipoxygenase 1 lipoxygenase 3	3	Tolerance and resistance - Insect resistance Biochemical character Tolerance and resistance - Stress tolerance Tolerance and resistance - Disease resistance	GO:0016165 - lipoxygenase activity GO:0009266 - response to temperature stimulus GO:0005506 - iron ion binding GO:0034440 - lipid oxidation GO:0010311 - lateral root formation GO:0031408 - oxylipin biosynthetic process GO:0009507 - chloroplast GO:0050832 - defense response to fungus GO:0009409 - response to cold	TO:0000303 - cold tolerance TO:0000074 - blast disease TO:0000164 - stress trait TO:0000401 - plant growth hormone sensitivity TO:0000432 - temperature response trait TO:0000424 - brown planthopper resistance TO:0002668 - jasmonic acid content TO:0000172 - jasmonic acid sensitivity TO:0000476 - growth hormone content		Os03g0699700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g49260.1 LOC_Os03g49260.2
GM9	Gm9 Gm9(t)	GALL MIDGE RESISTANCE 9	Gall midge resistance-9		Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure PO:0000003 - whole plant	-
GM10	Gm10 Gm10(t)	GALL MIDGE RESISTANCE 10	Gall midge resistance-10		Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure PO:0000003 - whole plant	-
BPH21	Bph21(t)	BROWN PLANTHOPPER RESISTANCE 21		12	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BPH20	Bph20(t)	BROWN PLANTHOPPER RESISTANCE 20		4	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BPH13	Bph13(t)	BROWN PLANT HOPPER RESISTANT 13		3	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BPH22	Bph22(t)	BROWN PLANTHOPPER RESISTANCE 22		6	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
GM11	Gm11t Gm11(t) Gm11	GALL MIDGE RESISTANCE 11		12	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure PO:0000003 - whole plant	-
MKK3	OsMKK3 OsMAPKK3 MAPKK3 OsMEK8a MEK8a OsMEK3 MEK3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3	MAPK kinase 3	6	Seed - Physiological traits - Dormancy Tolerance and resistance - Stress tolerance Biochemical character Tolerance and resistance - Disease resistance Tolerance and resistance - Insect resistance	GO:0002213 - defense response to insect GO:0009651 - response to salt stress GO:0009787 - regulation of abscisic acid mediated signaling GO:0009739 - response to gibberellin stimulus GO:0042742 - defense response to bacterium GO:0042542 - response to hydrogen peroxide GO:0009414 - response to water deprivation GO:0005737 - cytoplasm GO:2000033 - regulation of seed dormancy GO:0009737 - response to abscisic acid stimulus GO:0009733 - response to auxin stimulus GO:0048623 - seed germination on parent plant GO:0005634 - nucleus	TO:0006001 - salt tolerance TO:0000166 - gibberellic acid sensitivity TO:0000175 - bacterial blight disease resistance TO:0000619 - vivipary TO:0000253 - seed dormancy TO:0000163 - auxin sensitivity TO:0000424 - brown planthopper resistance TO:0000276 - drought tolerance TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence PO:0009006 - shoot system PO:0025034 - leaf	Os06g0473200 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os06g27890.4 LOC_Os06g27890.3 LOC_Os06g27890.2 LOC_Os06g27890.1
SMG1	OsMKK4 MKK4 OsMKK4/SMG1 OsMAPKK4 MAPKK4 OsMEK4 MEK4 OsSMG1 SMG1/OsMEK6 OsMEK6 MEK6 OsSTS STS	SMALL GRAIN 1	MAPK kinase 4 mitogen-activated protein kinase kinase 4 small grain1 LARGE11 large grain 11 salt-tolerant and small grains	2	Tolerance and resistance - Disease resistance Reproductive organ - Panicle, Mode of branching Tolerance and resistance - Stress tolerance Vegetative organ - Leaf Tolerance and resistance - Insect resistance Character as QTL - Yield and productivity Vegetative organ - Root Seed - Morphological traits Seed - Morphological traits - Grain shape Reproductive organ - Spikelet, flower, glume, awn Biochemical character	GO:0005737 - cytoplasm GO:0010200 - response to chitin GO:0006970 - response to osmotic stress GO:0010229 - inflorescence development GO:0045595 - regulation of cell differentiation GO:0050832 - defense response to fungus GO:0016020 - membrane GO:0009738 - abscisic acid mediated signaling GO:0009414 - response to water deprivation GO:0009733 - response to auxin stimulus GO:0009735 - response to cytokinin stimulus GO:0048364 - root development GO:0008283 - cell proliferation GO:0000165 - MAPKKK cascade GO:0009741 - response to brassinosteroid stimulus GO:0042742 - defense response to bacterium GO:0009611 - response to wounding GO:0005634 - nucleus GO:0009651 - response to salt stress GO:0009751 - response to salicylic acid stimulus GO:0009739 - response to gibberellin stimulus GO:0002213 - defense response to insect GO:0080027 - response to herbivore GO:0009409 - response to cold GO:0009743 - response to carbohydrate stimulus GO:0009742 - brassinosteroid mediated signaling GO:0009690 - cytokinin metabolic process GO:0009737 - response to abscisic acid stimulus GO:0042127 - regulation of cell proliferation	TO:0000166 - gibberellic acid sensitivity TO:0000175 - bacterial blight disease resistance TO:0000734 - grain length TO:0002759 - grain number TO:0000167 - cytokinin sensitivity TO:0000456 - spikelet number TO:0000206 - leaf angle TO:0000391 - seed size TO:0000439 - fungal disease resistance TO:0000397 - grain size TO:0000396 - grain yield TO:0001034 - relative plant height TO:0000516 - relative root length TO:0000095 - osmotic response sensitivity TO:0000590 - grain weight TO:0000621 - inflorescence development trait TO:0000454 - stem borer resistance TO:0000207 - plant height TO:0000074 - blast disease TO:0000160 - UV light sensitivity TO:0000615 - abscisic acid sensitivity TO:0002660 - cytokinin content TO:0002669 - diterpenoid phytoalexin content TO:0000447 - filled grain number TO:0000276 - drought tolerance TO:0000656 - root development trait TO:0000303 - cold tolerance TO:0002677 - brassinosteroid sensitivity TO:0000040 - panicle length TO:0000163 - auxin sensitivity TO:0000382 - 1000-seed weight TO:0000557 - secondary branch number TO:0000547 - primary branch number TO:0000455 - seed set percent TO:0000342 - panicle axis angle TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage PO:0020104 - leaf sheath PO:0007520 - root development stage PO:0025034 - leaf	Os02g0787300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g54600.1
BPH23	Bph23(t)	BROWN PLANTHOPPER RESISTANCE 23			Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BPH24	Bph24(t)	BROWN PLANTHOPPER RESISTANCE 24			Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BPH25	Bph25(t)	BROWN PLANTHOPPER RESISTANCE 25		6	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance		-
BC7	OsCesA4 OsCESA4 CESA4 OS_CESA04 BC11 bc7t Bc7(t) bc-7 OsCesA 4 CesA4 FC17/CESA4 FC17 OsFC17	BRITTLE CULM 7	Cellulose synthase A catalytic subunit 4 [UDP-forming] Cellulose synthase A catalytic subunit 4 brittle culm 7 brittle culm11 fragile culm 17	1	Biochemical character Vegetative organ - Culm Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance	GO:0009531 - secondary cell wall GO:0007047 - cell wall organization GO:0005515 - protein binding GO:0009610 - response to symbiotic fungus GO:0005886 - plasma membrane GO:0016021 - integral to membrane GO:0016760 - cellulose synthase (UDP-forming) activity GO:0030244 - cellulose biosynthetic process GO:0009834 - secondary cell wall biogenesis GO:0009642 - response to light intensity GO:0008270 - zinc ion binding GO:0071669 - plant-type cell wall organization or biogenesis GO:0016020 - membrane GO:0044403 - symbiosis, encompassing mutualism through parasitism GO:0009409 - response to cold GO:0009723 - response to ethylene stimulus GO:0002213 - defense response to insect	TO:0000173 - ethylene sensitivity TO:0000424 - brown planthopper resistance TO:0000303 - cold tolerance TO:0000460 - light intensity sensitivity TO:0000011 - nitrogen sensitivity TO:0000051 - stem strength	PO:0009047 - stem PO:0000025 - root tip PO:0025025 - root system	Os01g0750300 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os01g54620.1
WRKY104	OsWRKY104 CRPG32 OsCRPG32	WRKY GENE 104	collar region-preferential gene 32	11	Tolerance and resistance - Insect resistance Tolerance and resistance - Disease resistance Tolerance and resistance - Stress tolerance Reproductive organ - Heading date	GO:0051607 - defense response to virus GO:0010224 - response to UV-B GO:0050832 - defense response to fungus GO:0006952 - defense response GO:0048573 - photoperiodism, flowering GO:0042742 - defense response to bacterium GO:0009753 - response to jasmonic acid stimulus GO:0003700 - transcription factor activity GO:0002213 - defense response to insect	TO:0000172 - jasmonic acid sensitivity TO:0000601 - UV-B light sensitivity TO:0000731 - lignin content TO:0000074 - blast disease TO:0000205 - white-backed planthopper resistance TO:0000175 - bacterial blight disease resistance TO:0000148 - viral disease resistance TO:0002616 - flowering time TO:0000137 - days to heading TO:0000145 - internode length	PO:0006012 - leaf collar	Os11g0117400 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os11g02520.1
WRKY81	OsWRKY81 OsWRKY33	WRKY GENE 81		3	Tolerance and resistance - Disease resistance Tolerance and resistance - Insect resistance	GO:0003700 - transcription factor activity GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway GO:0043565 - sequence-specific DNA binding GO:0006952 - defense response GO:0009863 - salicylic acid mediated signaling pathway GO:0080027 - response to herbivore GO:0042742 - defense response to bacterium GO:0002213 - defense response to insect	TO:0000175 - bacterial blight disease resistance TO:0000454 - stem borer resistance TO:0000112 - disease resistance		Os03g0444900 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os03g33012.1
GLH10	glh10t glh10(t) glh10	GREEN LEAFHOPPER RESISTANCE 10	Green leafhopper resistance10 Green leafhopper resistance 10 Green leafhopper resistance-10 Green leafhopper resistance-10t		Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant PO:0009011 - plant structure	-
GLH11	Glh11t Glh11(t) Glh11	GREEN LEAFHOPPER RESISTANCE 11	Green leafhopper resistance11 Green leafhopper resistance 11 Green leafhopper resistance-11 Green leafhopper resistance-11t		Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant PO:0009011 - plant structure	-
PITP	Pi-tp(t) Pitp(t) Pi-tp	PYRICULARIA ORYZAE RESISTANCE TP	Pyricularia oryzae resistance-tp Magnaporthe grisea resistance-tp	1	Tolerance and resistance - Insect resistance	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf	-
AOS3	OsAOS3 HPL2 OsHPL2 OsAOS3/OsHPL2	ALLENE OXIDE SYNTHASE 3	allene oxide synthase3 Allene oxide synthase 3 HYDROPEROXIDE LYASE 2	2	Biochemical character Tolerance and resistance - Stress tolerance Tolerance and resistance - Insect resistance Tolerance and resistance - Disease resistance	GO:0016829 - lyase activity GO:0004497 - monooxygenase activity GO:0031408 - oxylipin biosynthetic process GO:0009941 - chloroplast envelope GO:0005506 - iron ion binding GO:0005739 - mitochondrion GO:0009611 - response to wounding GO:0009753 - response to jasmonic acid stimulus GO:0009266 - response to temperature stimulus GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 - heme binding GO:0047987 - hydroperoxide dehydratase activity GO:0009055 - electron carrier activity GO:0050832 - defense response to fungus GO:0009620 - response to fungus GO:0009978 - allene oxide synthase activity GO:0009624 - response to nematode GO:0009695 - jasmonic acid biosynthetic process GO:0002215 - defense response to nematode GO:0010287 - plastoglobule GO:0009535 - chloroplast thylakoid membrane	TO:0000074 - blast disease TO:0000384 - nematode damage resistance TO:0000432 - temperature response trait		Os02g0218700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os02g12680.1
BC6	Bc6* Bc6 OsCesA9 CESA9 OsCESA9 OS_CESA09 OsCesA 9 CesA9 BC88 SDBC1 OsSDBC1	BRITTLE CULM 6	Brittle culm6 Brittle culm 6 Brittle culm-6 Cellulose synthase A catalytic subunit 9 [UDP-forming] Cellulose synthase A catalytic subunit 9 semi-dominant brittle culm 1 fragile culm 16	9	Tolerance and resistance - Insect resistance Vegetative organ - Culm Biochemical character Tolerance and resistance - Stress tolerance	GO:0016023 - cytoplasmic membrane-bounded vesicle GO:0009531 - secondary cell wall GO:0005515 - protein binding GO:0007047 - cell wall organization GO:0009723 - response to ethylene stimulus GO:0071669 - plant-type cell wall organization or biogenesis GO:0002213 - defense response to insect GO:0005886 - plasma membrane GO:0008270 - zinc ion binding GO:0009610 - response to symbiotic fungus GO:0009808 - lignin metabolic process GO:0009834 - secondary cell wall biogenesis GO:0016020 - membrane GO:0009642 - response to light intensity GO:0048573 - photoperiodism, flowering GO:0006950 - response to stress GO:0010410 - hemicellulose metabolic process GO:0044403 - symbiosis, encompassing mutualism through parasitism GO:0031225 - anchored to membrane GO:0016021 - integral to membrane GO:0009651 - response to salt stress GO:0016760 - cellulose synthase (UDP-forming) activity GO:0030244 - cellulose biosynthetic process GO:0052324 - cell wall cellulose biosynthetic process GO:0009409 - response to cold	TO:0000108 - leaf shattering TO:0000557 - secondary branch number TO:0006001 - salt tolerance TO:0000061 - node shattering TO:0000303 - cold tolerance TO:0000173 - ethylene sensitivity TO:0000608 - sodium content TO:0000424 - brown planthopper resistance TO:0000333 - sugar content TO:0000227 - root length TO:0000346 - tiller number TO:0000137 - days to heading TO:0000207 - plant height TO:0000011 - nitrogen sensitivity TO:0006002 - proline content TO:0000168 - abiotic stress trait TO:0000051 - stem strength TO:0000605 - hydrogen peroxide content TO:0000460 - light intensity sensitivity	PO:0000025 - root tip PO:0009047 - stem PO:0025025 - root system PO:0009025 - vascular leaf PO:0009049 - inflorescence	Os09g0422500 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os09g25490.1
BPH5	bph5	BROWN PLANTHOPPER RESISTANCE 5	brown planthopper resistance 5 brown planthopper resistance-5		Tolerance and resistance - Insect resistance	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system PO:0009025 - vascular leaf	-
BPH6	Bph6 OsBPH6	BROWN PLANTHOPPER RESISTANCE 6	brown planthopper resistance 6 Brown planthopper resistance-6	4	Tolerance and resistance - Insect resistance	GO:0009625 - response to insect GO:0000145 - exocyst GO:0009736 - cytokinin mediated signaling GO:0009863 - salicylic acid mediated signaling pathway GO:0009867 - jasmonic acid mediated signaling pathway GO:0045921 - positive regulation of exocytosis GO:0080036 - regulation of cytokinin mediated signaling	TO:0000205 - white-backed planthopper resistance TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system PO:0009025 - vascular leaf	Os04g0431700 Oryzabase ( IRGSP 1.0 / Build5 ) Rap ( IRGSP 1.0 / Build5 )	LOC_Os04g35210.1

494 Hit First Previous 1-50 51-100 101-150 151-200 201-250 251-300 Next Last All

GO:0002213-defense response to insect (318)
GO:0050832-defense response to fungus (117)
GO:0009651-response to salt stress (108)
GO:0009753-response to jasmonic acid ... (104)
GO:0042742-defense response to bacterium (102)
GO:0005634-nucleus (96)
GO:0009414-response to water deprivation (93)
GO:0009625-response to insect (82)
GO:0006952-defense response (81)
GO:0009409-response to cold (76)
GO:0009737-response to abscisic acid ... (73)
GO:0002215-defense response to nematode (72)
GO:0009867-jasmonic acid mediated si ... (70)
GO:0009611-response to wounding (51)
GO:0005737-cytoplasm (50)
GO:0009408-response to heat (49)
GO:0003700-transcription factor activity (47)
GO:0009751-response to salicylic aci ... (44)
GO:0043565-sequence-specific DNA binding (44)
GO:0005524-ATP binding (43)
GO:0009863-salicylic acid mediated s ... (35)
GO:0051607-defense response to virus (35)
GO:0003677-DNA binding (34)
GO:0005886-plasma membrane (33)
GO:0006355-regulation of transcripti ... (32)
GO:0080027-response to herbivore (32)
GO:0002237-response to molecule of b ... (30)
GO:0009617-response to bacterium (30)
GO:0009723-response to ethylene stimulus (30)
GO:0009620-response to fungus (29)
GO:0009739-response to gibberellin s ... (29)
GO:0016021-integral to membrane (29)
GO:0002238-response to molecule of f ... (25)
GO:0009733-response to auxin stimulus (25)
GO:0009609-response to symbiotic bac ... (24)
GO:0016020-membrane (24)
GO:0048364-root development (24)
GO:0000287-magnesium ion binding (23)
GO:0042594-response to starvation (23)
GO:0080141-regulation of jasmonic ac ... (23)
GO:0009814-defense response, incompa ... (21)
GO:0004674-protein serine/threonine ... (19)
GO:0006979-response to oxidative stress (19)
GO:0009624-response to nematode (19)
GO:0009741-response to brassinostero ... (19)
GO:0010150-leaf senescence (19)
GO:0010200-response to chitin (19)
GO:0005506-iron ion binding (18)
GO:0009738-abscisic acid mediated si ... (18)
GO:0010333-terpene synthase activity (18)
GO:0009413-response to flooding (16)
GO:0043531-ADP binding (16)
GO:0005829-cytosol (15)
GO:0009809-lignin biosynthetic process (15)
GO:0020037-heme binding (15)
GO:0006350-transcription (14)
GO:0009507-chloroplast (14)
GO:0009695-jasmonic acid biosyntheti ... (14)
GO:0016036-cellular response to phos ... (14)
GO:0046688-response to copper ion (14)
GO:0009266-response to temperature s ... (13)
GO:0009411-response to UV (13)
GO:0009742-brassinosteroid mediated ... (13)
GO:0010229-inflorescence development (13)
GO:0030244-cellulose biosynthetic pr ... (13)
GO:0031408-oxylipin biosynthetic process (13)
GO:0006379-mRNA cleavage (12)
GO:0009416-response to light stimulus (12)
GO:0009536-plastid (12)
GO:0009718-anthocyanin biosynthetic ... (12)
GO:0009735-response to cytokinin sti ... (12)
GO:0016442-RNA-induced silencing complex (12)
GO:0035068-micro-ribonucleoprotein c ... (12)
GO:0035195-gene silencing by miRNA (12)
GO:0004497-monooxygenase activity (11)
GO:0004707-MAP kinase activity (11)
GO:0005576-extracellular region (11)
GO:0005739-mitochondrion (11)
GO:0009734-auxin mediated signaling ... (11)
GO:0009845-seed germination (11)
GO:0010224-response to UV-B (11)
GO:0031348-negative regulation of de ... (11)
GO:0000165-MAPKKK cascade (10)
GO:0008270-zinc ion binding (10)
GO:0009873-ethylene mediated signali ... (10)
GO:0016705-oxidoreductase activity, ... (10)
GO:0016760-cellulose synthase (UDP-f ... (10)
GO:0045893-positive regulation of tr ... (10)
GO:0048316-seed development (10)
GO:0048573-photoperiodism, flowering (10)
GO:0080142-regulation of salicylic a ... (10)
GO:0005509-calcium ion binding (9)
GO:0006970-response to osmotic stress (9)
GO:0009055-electron carrier activity (9)
GO:0009607-response to biotic stimulus (9)
GO:0009813-flavonoid biosynthetic pr ... (9)
GO:0009834-secondary cell wall bioge ... (9)
GO:0016829-lyase activity (9)
GO:0045892-negative regulation of tr ... (9)
GO:0046686-response to cadmium ion (9)

PO:0009005-root (58)
PO:0025034-leaf (45)
PO:0000003-whole plant (44)
PO:0009011-plant structure (37)
PO:0009006-shoot system (36)
PO:0020104-leaf sheath (34)
PO:0009049-inflorescence (32)
PO:0009047-stem (23)
PO:0009025-vascular leaf (20)
PO:0001054-4 leaf senescence stage (13)
PO:0001170-seed development stage (13)
PO:0009009-plant embryo (13)
PO:0001083-inflorescence development ... (12)
PO:0007057-0 seed germination stage (12)
PO:0007520-root development stage (11)
PO:0000025-root tip (10)
PO:0009066-anther (9)
PO:0009010-seed (8)
PO:0009051-spikelet (7)
PO:0007045-coleoptile emergence stage (5)
PO:0007616-flowering stage (5)
PO:0007632-seed maturation stage (5)
PO:0009046-flower (5)
PO:0009089-endosperm (5)
PO:0007131-seedling development stage (4)
PO:0009030-carpel (4)
PO:0020141-stem node (4)
PO:0020142-stem internode (4)
PO:0001004-anther development stage (3)
PO:0001007-pollen development stage (3)
PO:0001050-leaf development stage (3)
PO:0005052-plant callus (3)
PO:0006036-root epidermis (3)
PO:0007089-stem elongation stage (3)
PO:0007633-endosperm development stage (3)
PO:0008037-seedling (3)
PO:0009036-lodicule (3)
PO:0020033-coleoptile (3)
PO:0020103-flag leaf (3)
PO:0020121-lateral root (3)
PO:0000037-shoot apex (2)
PO:0000077-sclerenchyma cell (2)
PO:0000258-root cortex (2)
PO:0005772-exodermis (2)
PO:0006012-leaf collar (2)
PO:0007010-whole plant fruit ripenin ... (2)
PO:0007030-seedling shoot emergence ... (2)
PO:0007631-plant embryo stage (2)
PO:0009037-lemma (2)
PO:0009038-palea (2)
PO:0009039-glume (2)
PO:0020039-leaf lamina (2)
PO:0020122-inflorescence axis (2)
PO:0020138-leaf lamina vein (2)
PO:0025025-root system (2)
PO:0000034-vascular system (1)
PO:0000074-parenchyma cell (1)
PO:0000252-endodermis (1)
PO:0000282-trichome (1)
PO:0000293-guard cell (1)
PO:0001031-4 root elongation stage (1)
PO:0002000-stomatal complex (1)
PO:0003011-root vascular system (1)
PO:0004506-developing seed stage (1)
PO:0005004-shoot node (1)
PO:0005010-anther septum (1)
PO:0005020-vascular bundle (1)
PO:0005059-root endodermis (1)
PO:0005352-xylem (1)
PO:0005360-aleurone layer (1)
PO:0005421-parenchyma (1)
PO:0005427-sclerenchyma (1)
PO:0005679-epidermis (1)
PO:0006033-paleal apiculus (1)
PO:0006339-juvenile vascular leaf (1)
PO:0006503-fruit abscission zone (1)
PO:0007022-seed imbibition stage (1)
PO:0007134-sporophyte vegetative stage (1)
PO:0007615-flower development stage (1)
PO:0008039-stem base (1)
PO:0009029-stamen (1)
PO:0009053-peduncle (1)
PO:0009073-stigma (1)
PO:0009074-style (1)
PO:0009082-spikelet floret (1)
PO:0009088-seed coat (1)
PO:0020031-radicle (1)
PO:0020032-plumule (1)
PO:0020123-root cap (1)
PO:0020127-primary root (1)
PO:0020148-shoot apical meristem (1)
PO:0025348-phyllome lamina vein (1)
PO:0025349-awn (1)
PO:0025527-shoot system development ... (1)
PO:0028003-gametophyte development stage (1)

TO:0000424-brown planthopper resistance (254)
TO:0000074-blast disease (107)
TO:0000172-jasmonic acid sensitivity (106)
TO:0006001-salt tolerance (104)
TO:0000276-drought tolerance (92)
TO:0000175-bacterial blight disease ... (87)
TO:0000261-insect damage resistance (78)
TO:0000384-nematode damage resistance (74)
TO:0000303-cold tolerance (73)
TO:0000615-abscisic acid sensitivity (70)
TO:0000205-white-backed planthopper ... (55)
TO:0000207-plant height (53)
TO:0000454-stem borer resistance (48)
TO:0000259-heat tolerance (46)
TO:0002668-jasmonic acid content (39)
TO:0000605-hydrogen peroxide content (37)
TO:0000227-root length (31)
TO:0000255-sheath blight disease res ... (30)
TO:0000357-growth and development trait (30)
TO:0000148-viral disease resistance (28)
TO:0000166-gibberellic acid sensitivity (27)
TO:0000163-auxin sensitivity (25)
TO:0000173-ethylene sensitivity (24)
TO:0000397-grain size (23)
TO:0000396-grain yield (22)
TO:0000432-temperature response trait (22)
TO:0000212-green leafhopper resistance (21)
TO:0000112-disease resistance (20)
TO:0002677-brassinosteroid sensitivity (20)
TO:0000249-leaf senescence (19)
TO:0000734-grain length (19)
TO:0000290-flavonoid content (18)
TO:0000382-1000-seed weight (18)
TO:0000447-filled grain number (17)
TO:0002657-oxidative stress (17)
TO:0000401-plant growth hormone sens ... (16)
TO:0000455-seed set percent (16)
TO:0000656-root development trait (16)
TO:0000731-lignin content (16)
TO:0000040-panicle length (15)
TO:0000160-UV light sensitivity (15)
TO:0000326-leaf color (15)
TO:0000495-chlorophyll content (15)
TO:0000590-grain weight (15)
TO:0000021-copper sensitivity (14)
TO:0000031-silicon sensitivity (14)
TO:0000423-gall midge resistance (14)
TO:0000460-light intensity sensitivity (14)
TO:0000524-submergence tolerance (14)
TO:0000102-phosphorus sensitivity (13)
TO:0000315-bacterial disease resistance (13)
TO:0002616-flowering time (13)
TO:0000020-black streak dwarf virus ... (12)
TO:0000179-biotic stress trait (12)
TO:0000346-tiller number (12)
TO:0000621-inflorescence development ... (12)
TO:0000011-nitrogen sensitivity (11)
TO:0000075-light sensitivity (11)
TO:0000167-cytokinin sensitivity (11)
TO:0000168-abiotic stress trait (11)
TO:0000653-seed development trait (11)
TO:0000063-mimic response (10)
TO:0000137-days to heading (10)
TO:0000402-grain width (10)
TO:0000516-relative root length (10)
TO:0002667-abscisic acid content (10)
TO:0002669-diterpenoid phytoalexin c ... (10)
TO:0002759-grain number (10)
TO:0000071-anthocyanin content (9)
TO:0000095-osmotic response sensitivity (9)
TO:0000203-bacterial leaf streak dis ... (9)
TO:0000224-iron sensitivity (9)
TO:0000391-seed size (9)
TO:0000576-stem length (9)
TO:0000592-1000-dehulled grain weight (9)
TO:0000601-UV-B light sensitivity (9)
TO:0000145-internode length (8)
TO:0000403-leaf-folder resistance (8)
TO:0000439-fungal disease resistance (8)
TO:0000476-growth hormone content (8)
TO:0000655-leaf development trait (8)
TO:0000051-stem strength (7)
TO:0000114-flooding related trait (7)
TO:0000129-false smut disease resistance (7)
TO:0000180-spikelet fertility (7)
TO:0000266-chalky endosperm (7)
TO:0000449-grain yield per plant (7)
TO:0000481-alkali sensitivity (7)
TO:0001034-relative plant height (7)
TO:0006002-proline content (7)
TO:0000006-calcium sensitivity (6)
TO:0000015-oxygen sensitivity (6)
TO:0000058-herbicide sensitivity (6)
TO:0000206-leaf angle (6)
TO:0000370-leaf width (6)
TO:0000371-yield trait (6)
TO:0000429-salt sensitivity (6)
TO:0000430-germination rate (6)
TO:0000608-sodium content (6)
TO:0002660-cytokinin content (6)

039_Tolerance and resistance - Insec ... (494)
040_Tolerance and resistance - Stres ... (216)
038_Tolerance and resistance - Disea ... (178)
001_Biochemical character (174)
099_Other (53)
004_Vegetative organ - Leaf (50)
005_Vegetative organ - Culm (47)
006_Vegetative organ - Root (41)
043_Character as QTL - Yield and pro ... (34)
044_Character as QTL - Plant growth ... (29)
036_Tolerance and resistance (28)
029_Seed - Morphological traits - Gr ... (22)
051_Reproductive organ - Spikelet, f ... (19)
045_Character as QTL - Germination (14)
022_Coloration - Anthocyanin (13)
026_Seed - Morphological traits (13)
010_Reproductive organ - panicle (12)
008_Reproductive organ - Heading date (11)
023_Coloration - Chlorophyll (11)
025_Seed (10)
037_Tolerance and resistance - Lesio ... (7)
042_Character as QTL - Grain quality (7)
011_Reproductive organ - Pollination ... (6)
031_Seed - Physiological traits - Do ... (6)
033_Seed - Physiological traits - St ... (6)
024_Coloration - Others (4)
027_Seed - Morphological traits - Embryo (4)
003_Vegetative organ - Shoot apical ... (3)
009_Reproductive organ - Inflorescence (3)
016_Reproductive organ - Pollination ... (3)
048_Reproductive organ - Panicle, Mo ... (3)
018_Reproductive organ - Pollination ... (2)
028_Seed - Morphological traits - En ... (2)
034_Seed - Physiological traits - Sh ... (2)
017_Reproductive organ - Pollination ... (1)
030_Seed - Physiological traits (1)
032_Seed - Physiological traits - Lo ... (1)
035_Seed - Physiological traits - Taste (1)
100_unclassified (1)

Rice Database Oryzabase

Gene - List

List of Gene