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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
GH3-8 OsGH3-8
OsMGH3
OsGH3.8
GH3.8
OsGH3-2
 GRETCHEN HAGEN 3 GENE 8 Gretchen Hagen 3 protein 8
 7 Tolerance and resistance - Disease resistance
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Culm
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
 GO:0009863 - salicylic acid mediated signaling pathway
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009852 - auxin catabolic process
GO:0006955 - immune response
GO:0010279 - indole-3-acetic acid amido synthetase activity
GO:0016874 - ligase activity
GO:0009651 - response to salt stress
GO:0051607 - defense response to virus
GO:0009908 - flower development
 TO:0000622 - flower development trait
TO:0000172 - jasmonic acid sensitivity
TO:0000346 - tiller number
TO:0000020 - black streak dwarf virus resistance
TO:0000207 - plant height
TO:0000401 - plant growth hormone sensitivity
TO:0006001 - salt tolerance
TO:0002672 - auxin content
 PO:0009049 - inflorescence
PO:0007615 - flower development stage
PO:0008037 - seedling
PO:0009066 - anther
PO:0005052 - plant callus
PO:0009010 - seed
Os07g0592600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g40290.1
GID1 gid1
OsGID1
Thl
Os GID1
 GIBBERELLIN INSENSITIVE DWARF1 GIBBERELLIN-INSENSITIVE DWARF1
Gibberellin receptor GID1
Gibberellin-insensitive dwarf protein 1
Protein GIBBERELLIN INSENSITIVE DWARF1
Thumbelina
GA-insensitive dwarf 1
 5 Tolerance and resistance - Disease resistance
Seed - Physiological traits - Dormancy
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
 GO:0004872 - receptor activity
GO:0010162 - seed dormancy
GO:0009609 - response to symbiotic bacterium
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0006109 - regulation of carbohydrate metabolic process
GO:0009740 - gibberellic acid mediated signaling
GO:0010271 - regulation of chlorophyll catabolic process
GO:0014001 - sclerenchyma cell differentiation
GO:2000037 - regulation of stomatal complex patterning
GO:0009737 - response to abscisic acid stimulus
GO:2000038 - regulation of stomatal complex development
GO:0005634 - nucleus
GO:0008152 - metabolic process
GO:0016787 - hydrolase activity
GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0009739 - response to gibberellin stimulus
 TO:0000615 - abscisic acid sensitivity
TO:0000074 - blast disease
TO:0000135 - leaf length
TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000286 - submergence sensitivity
TO:0000566 - stomatal frequency
TO:0000207 - plant height
TO:0000470 - vascular tissue related trait
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0000291 - carbohydrate content
TO:0000495 - chlorophyll content
TO:0000253 - seed dormancy
 Os05g0407500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g33730.1
NH1 OsNH1
OsNPR1
OsNPR1/NH1
NPR1
OsPR2
PR2
DLN5
OsDLN5
OsBTBA1
BTBA1
 NPR1 HOMOLOG 1 NPR1-like 1
NPR1 homologue 1
nonexpresser of PR genes 1
Arabidopsis NPR1 homolog 1
non-expressor of pathogenesis-related gene 1
Arabidopsis NPR1 homologue 1
pathogenesis-related gene 2
nonexpressor of PR genes 1
Nonexpressor of Pathogenesis-Related Genes1
NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1
NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1
non-expressor pathogenesis-related 1
NONEXPRESSOR OF PR1
DLN repressor 5
DLN motif protein 5
BTB-type E3 ubiquitin ligase A1
 1 Character as QTL - Yield and productivity
Tolerance and resistance - Disease resistance
Tolerance and resistance - Lesion mimic
Tolerance and resistance - Insect resistance
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
 GO:0010200 - response to chitin
GO:0009734 - auxin mediated signaling pathway
GO:0002215 - defense response to nematode
GO:0010112 - regulation of systemic acquired resistance
GO:0008219 - cell death
GO:0006952 - defense response
GO:0048364 - root development
GO:0010942 - positive regulation of cell death
GO:0006950 - response to stress
GO:0031348 - negative regulation of defense response
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009625 - response to insect
GO:0016563 - transcription activator activity
GO:0009863 - salicylic acid mediated signaling pathway
GO:0002237 - response to molecule of bacterial origin
GO:0005829 - cytosol
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009609 - response to symbiotic bacterium
GO:0002213 - defense response to insect
GO:0009814 - defense response, incompatible interaction
GO:0050832 - defense response to fungus
GO:0009682 - induced systemic resistance
GO:0009408 - response to heat
GO:0009611 - response to wounding
GO:0009627 - systemic acquired resistance
GO:0005634 - nucleus
GO:0051607 - defense response to virus
 TO:0000656 - root development trait
TO:0000175 - bacterial blight disease resistance
TO:0000445 - seed number
TO:0000255 - sheath blight disease resistance
TO:0000346 - tiller number
TO:0000615 - abscisic acid sensitivity
TO:0000384 - nematode damage resistance
TO:0000424 - brown planthopper resistance
TO:0000401 - plant growth hormone sensitivity
TO:0000207 - plant height
TO:0000163 - auxin sensitivity
TO:0000074 - blast disease
TO:0000063 - mimic response
TO:0000172 - jasmonic acid sensitivity
TO:0000148 - viral disease resistance
TO:0000112 - disease resistance
TO:0000181 - seed weight
 PO:0007089 - stem elongation stage
PO:0007520 - root development stage
Os01g0194300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g09800.1
ACO7 OsACO7
 AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7 ACC oxidase 7
1-Aminocyclopropane-1-carboxylate oxidase 7
 1 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Biochemical character
 GO:0006970 - response to osmotic stress
GO:0009266 - response to temperature stimulus
GO:0046686 - response to cadmium ion
GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0009693 - ethylene biosynthetic process
GO:0042742 - defense response to bacterium
GO:0009617 - response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
 TO:0000615 - abscisic acid sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0006001 - salt tolerance
TO:0000095 - osmotic response sensitivity
TO:0000432 - temperature response trait
 PO:0009047 - stem
Os01g0580500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g39860.1
CIPK05 OsCIPK05
CIPK5
OsCIPK5
OsSTA7
OsSnRK3.2
SnRK3.2
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5 CBL-interacting protein kinase 5
Sucrose nonfermenting-1-related protein kinase 3.2
 1 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0042742 - defense response to bacterium
GO:0031348 - negative regulation of defense response
GO:0030145 - manganese ion binding
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009413 - response to flooding
 TO:0000203 - bacterial leaf streak disease resistance
TO:0000114 - flooding related trait
TO:0000303 - cold tolerance
 PO:0009066 - anther
PO:0009049 - inflorescence
Os01g0206700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10890.1
CIPK14 OsCIPK14
OsSnRK3.33
SnRK3.33
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14 CBL-interacting protein kinase 14
Sucrose nonfermenting-1-related protein kinase 3.33
 12 Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0050832 - defense response to fungus
GO:0009413 - response to flooding
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0005524 - ATP binding
GO:0060359 - response to ammonium ion
GO:0004674 - protein serine/threonine kinase activity
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000255 - sheath blight disease resistance
TO:0000114 - flooding related trait
 PO:0009005 - root
Os12g0113500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g02200.1
LOC_Os12g02200.2
CIPK15 OsCIPK15
OsSnRK3.31
SnRK3.31
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15 CBL-interacting protein kinase 15
Sucrose nonfermenting-1-related protein kinase 3.31
Calcineurin B-like protein-interacting protein kinase 15
 11 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0019722 - calcium-mediated signaling
GO:0042742 - defense response to bacterium
GO:0004674 - protein serine/threonine kinase activity
GO:0006468 - protein amino acid phosphorylation
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009610 - response to symbiotic fungus
GO:0009413 - response to flooding
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0000114 - flooding related trait
TO:0000175 - bacterial blight disease resistance
TO:0000203 - bacterial leaf streak disease resistance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0009005 - root
Os11g0113700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g02240.1
CIPK17 OsCIPK17
OsSnRK3.14
SnRK3.14
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17 CBL-interacting protein kinase 17
Sucrose nonfermenting-1-related protein kinase 3.14
 5 Vegetative organ - Culm
Vegetative organ - Root
Character as QTL - Germination
Biochemical character
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Tolerance and resistance - Stress tolerance
 GO:0010187 - negative regulation of seed germination
GO:0006952 - defense response
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0046686 - response to cadmium ion
GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0009408 - response to heat
GO:0005737 - cytoplasm
GO:0009409 - response to cold
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0030145 - manganese ion binding
 TO:0000207 - plant height
TO:0000227 - root length
TO:0000578 - root fresh weight
TO:0006001 - salt tolerance
TO:0000352 - plant dry weight
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
TO:0000112 - disease resistance
TO:0000276 - drought tolerance
 PO:0009005 - root
Os05g0136200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g04550.1
CIPK23 OsCIPK23
Os-CIPK23
OsSnRK3.23
SnRK3.23
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23 CBL-interacting protein kinase 23
CBL-Interacting Protein Kinase23
Sucrose nonfermenting-1-related protein kinase 3.23
 7 Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0050687 - negative regulation of defense response to virus
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
GO:0006468 - protein amino acid phosphorylation
GO:0005739 - mitochondrion
GO:0005524 - ATP binding
GO:0005634 - nucleus
GO:0004674 - protein serine/threonine kinase activity
GO:0060359 - response to ammonium ion
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
 TO:0001034 - relative plant height
TO:0000207 - plant height
TO:0000213 - rice grassy stunt 1 and 2 virus resistance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000514 - potassium uptake
 PO:0009005 - root
Os07g0150700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g05620.2
LOC_Os07g05620.1
DMI3 OsDMI3
OsCCaMK1
OsCCaMK
OsCCAMK
CCAMK
 DOESN'T MAKE INFECTIONS 3 DOESN'T MAKE INFECTIONS3
calcium and calmodulin-dependent protein kinase 1
Ca2+/calmodulin (CaM)-dependent protein kinase
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE
 5 Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Vegetative organ - Root
 GO:0009734 - auxin mediated signaling pathway
GO:0009610 - response to symbiotic fungus
GO:0010030 - positive regulation of seed germination
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0048364 - root development
GO:0009737 - response to abscisic acid stimulus
GO:0010726 - positive regulation of hydrogen peroxide metabolic process
GO:0006979 - response to oxidative stress
GO:0004683 - calmodulin-dependent protein kinase activity
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0019722 - calcium-mediated signaling
GO:0050832 - defense response to fungus
GO:0018107 - peptidyl-threonine phosphorylation
GO:0016021 - integral to membrane
GO:0006970 - response to osmotic stress
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0042542 - response to hydrogen peroxide
GO:0047484 - regulation of response to osmotic stress
GO:0005509 - calcium ion binding
GO:0030104 - water homeostasis
GO:0043408 - regulation of MAPKKK cascade
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0009414 - response to water deprivation
GO:0060267 - positive regulation of respiratory burst
 TO:0002657 - oxidative stress
TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0002672 - auxin content
TO:0000095 - osmotic response sensitivity
TO:0000656 - root development trait
TO:0000136 - relative water content
TO:0000276 - drought tolerance
TO:0000516 - relative root length
TO:0000074 - blast disease
TO:0000605 - hydrogen peroxide content
 PO:0007520 - root development stage
PO:0007057 - 0 seed germination stage
Os05g0489900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41090.1
HPL3 OsHPL3
CYP74B2
OsCYP74B2
 HYDROPEROXIDE LYASE 3 2 Tolerance and resistance - Disease resistance
Tolerance and resistance - Lesion mimic
Biochemical character
Tolerance and resistance - Insect resistance
 GO:0042742 - defense response to bacterium
GO:0002213 - defense response to insect
GO:0009753 - response to jasmonic acid stimulus
GO:0009055 - electron carrier activity
GO:0016829 - lyase activity
GO:0009695 - jasmonic acid biosynthetic process
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0031407 - oxylipin metabolic process
GO:0010597 - green leaf volatile biosynthetic process
GO:0051607 - defense response to virus
GO:0020037 - heme binding
GO:0009941 - chloroplast envelope
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0009611 - response to wounding
 TO:0000424 - brown planthopper resistance
TO:0000175 - bacterial blight disease resistance
TO:0000020 - black streak dwarf virus resistance
TO:0000172 - jasmonic acid sensitivity
TO:0002668 - jasmonic acid content
TO:0000063 - mimic response
TO:0000454 - stem borer resistance
TO:0000396 - grain yield
TO:0000148 - viral disease resistance
 Os02g0110200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g02000.1
MADS51 OsMADS51
OsMADS65
MADS65
qHd1
DLN36
OsDLN36
 MADS BOX GENE 51 MADS box gene51
DLN repressor 36
DLN motif protein 36
 1 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Other
Seed - Morphological traits
Reproductive organ - Heading date
 GO:0050832 - defense response to fungus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0009409 - response to cold
GO:0009408 - response to heat
GO:0006350 - transcription
GO:0043565 - sequence-specific DNA binding
 TO:0002616 - flowering time
TO:0000432 - temperature response trait
TO:0000259 - heat tolerance
TO:0000137 - days to heading
TO:0000303 - cold tolerance
TO:0000074 - blast disease
TO:0000357 - growth and development trait
TO:0000329 - tillering ability
TO:0000590 - grain weight
TO:0000396 - grain yield
TO:0000455 - seed set percent
TO:0000152 - panicle number
TO:0000449 - grain yield per plant
 Os01g0922800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g69850.1
MIR156B miR156b
OsmiR156b
osmiR156b
osa-miR156b
osa-MIR156b
miR156b*osa-miR156b-3p osa-miR156b-5p
 MICRORNA156B micro RNA 156b
microRNA156b
osa-miRNA156b
 1 Character as QTL - Plant growth activity
Other
Tolerance and resistance - Disease resistance
 GO:0050832 - defense response to fungus
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
GO:0035195 - gene silencing by miRNA
GO:0010050 - vegetative phase change
GO:0032350 - regulation of hormone metabolic process
 TO:0000074 - blast disease
TO:0000357 - growth and development trait
TO:0000476 - growth hormone content
 PO:0009049 - inflorescence
PO:0000009 - cultured plant callus
PO:0009005 - root
PO:0009025 - vascular leaf
-
SDT miR156h
OsmiR156h
osmiR156h
osa-miR156h
osa-MIR156hosa-miR156h-3p osa-miR156h-5p
 SEMIDWARF AND HIGH-TILLERING micro RNA 156h
microRNA156h
osa-miRNA156h
semidwarf and high-tillering
 6 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Vegetative organ - Culm
Other
 GO:0007623 - circadian rhythm
GO:0050832 - defense response to fungus
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
GO:0035195 - gene silencing by miRNA
 TO:0000207 - plant height
TO:0000050 - inflorescence branching
TO:0000074 - blast disease
TO:0000068 - lodging incidence
TO:0000346 - tiller number
TO:0000396 - grain yield
TO:0000329 - tillering ability
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0009005 - root
PO:0000009 - cultured plant callus
-
YUCCA1 OsYUCCA1
OsYUC1
YUC1
 YUCCA-LIKE GENE 1 (YUCCA-like gene)
 1 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Vegetative organ - Root
Tolerance and resistance - Disease resistance
 GO:0048364 - root development
GO:0010229 - inflorescence development
GO:0004499 - flavin-containing monooxygenase activity
GO:0009609 - response to symbiotic bacterium
GO:0051607 - defense response to virus
GO:0034059 - response to anoxia
GO:0009737 - response to abscisic acid stimulus
GO:0009851 - auxin biosynthetic process
GO:0046686 - response to cadmium ion
GO:0046685 - response to arsenic
GO:0048830 - adventitious root development
GO:0009408 - response to heat
GO:0009414 - response to water deprivation
 TO:0000020 - black streak dwarf virus resistance
TO:0002672 - auxin content
TO:0000447 - filled grain number
TO:0000084 - root number
TO:0000276 - drought tolerance
TO:0000621 - inflorescence development trait
TO:0000428 - callus induction
TO:0000259 - heat tolerance
TO:0000557 - secondary branch number
TO:0000449 - grain yield per plant
TO:0000615 - abscisic acid sensitivity
TO:0000396 - grain yield
TO:0000656 - root development trait
TO:0000227 - root length
TO:0001013 - lateral root number
TO:0000578 - root fresh weight
TO:0001006 - adventitious root number
TO:0000031 - silicon sensitivity
 PO:0009105 - inflorescence branch meristem
PO:0020103 - flag leaf
Os01g0645400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g45760.1
LOC_Os01g45760.2
YUCCA4 OsYUCCA4
OsYUC4
YUC4
YUCCA6
OsYUCCA6
 YUCCA-LIKE GENE 4 (YUCCA-like gene)
 1 Tolerance and resistance - Disease resistance
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0051707 - response to other organism
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0048653 - anther development
GO:0009901 - anther dehiscence
GO:0042594 - response to starvation
GO:0009793 - embryonic development ending in seed dormancy
GO:0009408 - response to heat
GO:0051607 - defense response to virus
 TO:0002672 - auxin content
TO:0000189 - embryoless
TO:0000259 - heat tolerance
TO:0000620 - embryo development trait
TO:0000148 - viral disease resistance
TO:0000615 - abscisic acid sensitivity
TO:0000657 - spikelet anatomy and morphology trait
 PO:0007631 - plant embryo stage
PO:0001004 - anther development stage
PO:0001035 - G anther dehiscence stage
PO:0009066 - anther
Os01g0224700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12490.1
YUCCA6 OsYUCCA6
OsYUC6
YUC6
 YUCCA-LIKE GENE 6 (YUCCA-like gene)
 7 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
 GO:0051607 - defense response to virus
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0010262 - somatic embryogenesis
GO:0009266 - response to temperature stimulus
 TO:0000432 - temperature response trait
TO:0002693 - gravity response trait
TO:0002672 - auxin content
TO:0000020 - black streak dwarf virus resistance
 PO:0005020 - vascular bundle
PO:0025275 - procambium
PO:0000423 - plant zygote
PO:0025127 - primordium
PO:0020148 - shoot apical meristem
Os07g0437000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g25540.1
PHB prohibitin
 PROHIBITIN prohibitin
 Tolerance and resistance - Disease resistance
 GO:0006952 - defense response
GO:0005739 - mitochondrion
 -
RBOHB rbohB
OsrbohB
Os rbohB
OsRbohB
OsNox1
Nox1
Os-RbohB
RbohB
OsRboh1
Rboh1
 RESPIRATORY BURST OXIDASE HOMOLOG B Respiratory Burst Oxidase Homolog B
Respiratory Burst Oxidase Homologue B
NADPH oxidase 1
 1 Vegetative organ - Root
Biochemical character
Character as QTL - Yield and productivity
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility
 GO:0009751 - response to salicylic acid stimulus
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0005509 - calcium ion binding
GO:0009408 - response to heat
GO:0010118 - stomatal movement
GO:0006952 - defense response
GO:0009626 - plant-type hypersensitive response
GO:0030104 - water homeostasis
GO:0002238 - response to molecule of fungal origin
GO:0009734 - auxin mediated signaling pathway
GO:0005886 - plasma membrane
GO:0010266 - response to vitamin B1
GO:0009566 - fertilization
GO:0050665 - hydrogen peroxide biosynthetic process
GO:0050832 - defense response to fungus
GO:0009413 - response to flooding
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0009687 - abscisic acid metabolic process
GO:0009753 - response to jasmonic acid stimulus
GO:0048364 - root development
GO:0043020 - NADPH oxidase complex
GO:0006979 - response to oxidative stress
GO:0009845 - seed germination
GO:0009737 - response to abscisic acid stimulus
GO:0009733 - response to auxin stimulus
GO:0042742 - defense response to bacterium
GO:0002679 - respiratory burst during defense response
GO:0006970 - response to osmotic stress
GO:0009651 - response to salt stress
GO:0043621 - protein self-association
GO:0016174 - NAD(P)H oxidase activity
GO:0016021 - integral to membrane
GO:0004601 - peroxidase activity
 TO:0000656 - root development trait
TO:0000163 - auxin sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0006002 - proline content
TO:0000136 - relative water content
TO:0000382 - 1000-seed weight
TO:0000430 - germination rate
TO:0002667 - abscisic acid content
TO:0000524 - submergence tolerance
TO:0000074 - blast disease
TO:0000615 - abscisic acid sensitivity
TO:0000112 - disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000095 - osmotic response sensitivity
TO:0000520 - stomatal closure rate
TO:0000605 - hydrogen peroxide content
TO:0002657 - oxidative stress
TO:0000439 - fungal disease resistance
TO:0000129 - false smut disease resistance
 PO:0025034 - leaf
Os01g0360200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g25820.2
LOC_Os01g25820.1
XB3 Xb3
OsRING223
RING223
 XA21 BINDING PROTEIN 3 Xa21-binding protein 3
receptor-like kinase Xa21-binding protein 3
RING-type E3 ubiquitin ligase 223
 5 Tolerance and resistance - Disease resistance
 GO:0004842 - ubiquitin-protein ligase activity
GO:0004872 - receptor activity
GO:0005515 - protein binding
GO:0008270 - zinc ion binding
GO:0016301 - kinase activity
GO:0051865 - protein autoubiquitination
GO:0016567 - protein ubiquitination
GO:0042742 - defense response to bacterium
 TO:0000175 - bacterial blight disease resistance
 PO:0009025 - vascular leaf
Os05g0112000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g02130.1
YGL1 OsYGL1
CHLG
Ygl1
CS
OsCHLG
 YELLOW-GREEN LEAF 1 chlorina
Chl synthetase
Chlorophyll synthase
yellow green leaf 1
 5 Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0051707 - response to other organism
GO:0006098 - pentose-phosphate shunt
GO:0006364 - rRNA processing
GO:0009073 - aromatic amino acid family biosynthetic process
GO:0009965 - leaf morphogenesis
GO:0010027 - thylakoid membrane organization
GO:0009416 - response to light stimulus
GO:0009534 - chloroplast thylakoid
GO:0015994 - chlorophyll metabolic process
GO:0042793 - transcription from plastid promoter
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0016021 - integral to membrane
GO:0016117 - carotenoid biosynthetic process
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0019344 - cysteine biosynthetic process
GO:0030154 - cell differentiation
GO:0051607 - defense response to virus
GO:0046686 - response to cadmium ion
GO:0046408 - chlorophyll synthetase activity
GO:0009902 - chloroplast relocation
GO:0015995 - chlorophyll biosynthetic process
GO:0031969 - chloroplast membrane
 TO:0000148 - viral disease resistance
TO:0000020 - black streak dwarf virus resistance
TO:0000075 - light sensitivity
 Os05g0349700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g28200.2
LOC_Os05g28200.1
WAK98 OsWAK98
OsRLCK287
RLCK287
 WALL-ASSOCIATED KINASE GENE 98 Receptor-like Cytoplasmic Kinase 287
 10 Seed
Biochemical character
Reproductive organ - panicle
Tolerance and resistance - Disease resistance
Tolerance and resistance
 GO:0010229 - inflorescence development
GO:0048316 - seed development
GO:0050832 - defense response to fungus
GO:0042742 - defense response to bacterium
GO:0009611 - response to wounding
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
 TO:0000175 - bacterial blight disease resistance
TO:0000653 - seed development trait
TO:0000074 - blast disease
TO:0000621 - inflorescence development trait
 PO:0009010 - seed
PO:0009049 - inflorescence
PO:0001170 - seed development stage
PO:0001083 - inflorescence development stage
Os10g0112700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g02360.1
WAK112 OsWAK112
OsWAK112d
 WALL-ASSOCIATED KINASE GENE 112 cell wall associated receptor kinase 112
cell wall associated receptor kinase 112d
 10 Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0004674 - protein serine/threonine kinase activity
GO:0050832 - defense response to fungus
GO:0010200 - response to chitin
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0030247 - polysaccharide binding
GO:0009651 - response to salt stress
GO:0010366 - negative regulation of ethylene biosynthetic process
GO:0005886 - plasma membrane
 TO:0006001 - salt tolerance
TO:0000605 - hydrogen peroxide content
TO:0000074 - blast disease
 PO:0025034 - leaf
PO:0009073 - stigma
PO:0009038 - palea
PO:0020031 - radicle
PO:0009047 - stem
PO:0009005 - root
PO:0020105 - ligule
PO:0020033 - coleoptile
PO:0009029 - stamen
Os10g0180800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g10130.5
LOC_Os10g10130.4
LOC_Os10g10130.3
LOC_Os10g10130.2
LOC_Os10g10130.1
WAK129 OsWAK129
OsRLCK375
RLCK375
OsWAK129b
 WALL-ASSOCIATED KINASE GENE 129 Receptor-like Cytoplasmic Kinase 375
 12 Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0050832 - defense response to fungus
GO:0005509 - calcium ion binding
GO:0030247 - polysaccharide binding
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000074 - blast disease
TO:0006001 - salt tolerance
 Os12g0615300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g42070.1
CDPK4 OsCDPK4
OsCPK4
CPK4
CDPK1
 CALCIUM-DEPENDENT PROTEIN KINASE 4 calcium-dependent protein kinase 4
Ca2 +-dependent protein kinase 4
 2 Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0009414 - response to water deprivation
GO:0010857 - calcium-dependent protein kinase activity
GO:0009735 - response to cytokinin stimulus
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0031348 - negative regulation of defense response
GO:0002237 - response to molecule of bacterial origin
GO:0002238 - response to molecule of fungal origin
GO:0050832 - defense response to fungus
GO:0042742 - defense response to bacterium
GO:0004674 - protein serine/threonine kinase activity
GO:0005886 - plasma membrane
 TO:0000167 - cytokinin sensitivity
TO:0000276 - drought tolerance
TO:0000074 - blast disease
TO:0000175 - bacterial blight disease resistance
 Os02g0126400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g03410.1
LOC_Os02g03410.2
CDPK5 OsCDPK5
OsCPK5
CPK5
 CALCIUM-DEPENDENT PROTEIN KINASE 5 calcium-dependent protein kinase
 2 Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Biochemical character
 GO:0032874 - positive regulation of stress-activated MAPK cascade
GO:0009739 - response to gibberellin stimulus
GO:0005509 - calcium ion binding
GO:0002221 - pattern recognition receptor signaling pathway
GO:0009735 - response to cytokinin stimulus
GO:0009414 - response to water deprivation
GO:0009733 - response to auxin stimulus
GO:0002679 - respiratory burst during defense response
GO:0005634 - nucleus
GO:0016020 - membrane
GO:0050832 - defense response to fungus
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
GO:0043068 - positive regulation of programmed cell death
GO:0006468 - protein amino acid phosphorylation
GO:0010618 - aerenchyma formation
 TO:0000074 - blast disease
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000276 - drought tolerance
TO:0000605 - hydrogen peroxide content
 PO:0000258 - root cortex
Os02g0685900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g46090.1
CDPK10 OsCDPK10
OsCPK10
CPK10
 CALCIUM-DEPENDENT PROTEIN KINASE 10 calcium-dependent protein kinase
 3 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0005886 - plasma membrane
GO:0042542 - response to hydrogen peroxide
GO:0009735 - response to cytokinin stimulus
GO:0031000 - response to caffeine
GO:0046466 - membrane lipid catabolic process
GO:0009414 - response to water deprivation
GO:0050832 - defense response to fungus
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0010857 - calcium-dependent protein kinase activity
GO:0009617 - response to bacterium
GO:0000302 - response to reactive oxygen species
 TO:0000167 - cytokinin sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000074 - blast disease
TO:0000276 - drought tolerance
 Os03g0788500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g57450.1
CDPK17 OsCDPK17
OsCPK17
CPK17
OsCPK17.1
OsCPK17.2
OsCPK17.3
OsCPK17.4
OsCPK17.5
 CALCIUM-DEPENDENT PROTEIN KINASE 17 calcium-dependent protein kinase
 7 Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0050778 - positive regulation of immune response
GO:0002679 - respiratory burst during defense response
GO:0002237 - response to molecule of bacterial origin
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0009733 - response to auxin stimulus
GO:0010857 - calcium-dependent protein kinase activity
GO:0009409 - response to cold
GO:0006109 - regulation of carbohydrate metabolic process
GO:0002238 - response to molecule of fungal origin
GO:0010200 - response to chitin
GO:0042742 - defense response to bacterium
 TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000203 - bacterial leaf streak disease resistance
TO:0000163 - auxin sensitivity
 Os07g0161600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g06740.3
LOC_Os07g06740.2
LOC_Os07g06740.1
CDPK19 OsCDPK19
OsCPK19
OsCDPK2
CPK2
CDPK2
 CALCIUM-DEPENDENT PROTEIN KINASE 19 calcium-dependent protein kinase
calcium-dependent protein kinase 2
 7 Tolerance and resistance - Disease resistance
Reproductive organ - Heading date
Biochemical character
 GO:0005886 - plasma membrane
GO:0009733 - response to auxin stimulus
GO:0009739 - response to gibberellin stimulus
GO:0051607 - defense response to virus
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0010857 - calcium-dependent protein kinase activity
 TO:0000020 - black streak dwarf virus resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000163 - auxin sensitivity
TO:0000148 - viral disease resistance
 Os07g0515100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g33110.1
LOC_Os07g33110.2
LOC_Os07g33110.3
LOC_Os07g33110.4
LOC_Os07g33110.5
CDPK24 OsCDPK24
OsCPK24
OsCDPK14
CPK24
 CALCIUM-DEPENDENT PROTEIN KINASE 24 calcium-dependent protein kinase
calcium-dependent protein kinase 14
 11 Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
GO:0050832 - defense response to fungus
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0010857 - calcium-dependent protein kinase activity
GO:0009414 - response to water deprivation
GO:0009411 - response to UV
GO:0009739 - response to gibberellin stimulus
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0005829 - cytosol
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0005886 - plasma membrane
 TO:0000166 - gibberellic acid sensitivity
TO:0006002 - proline content
TO:0000259 - heat tolerance
TO:0000303 - cold tolerance
TO:0000074 - blast disease
TO:0000175 - bacterial blight disease resistance
TO:0000255 - sheath blight disease resistance
TO:0000276 - drought tolerance
TO:0000160 - UV light sensitivity
 PO:0020104 - leaf sheath
PO:0025034 - leaf
PO:0009047 - stem
PO:0009005 - root
Os11g0171500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g07040.1
CDPK28 OsCDPK28
OsCPK28
CPK28
 CALCIUM-DEPENDENT PROTEIN KINASE 28 calcium-dependent protein kinase
 12 Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0050832 - defense response to fungus
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0009408 - response to heat
GO:0042742 - defense response to bacterium
GO:0005509 - calcium ion binding
 TO:0000255 - sheath blight disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
TO:0000259 - heat tolerance
 Os12g0169800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g07230.1
CATA CATA1
Cat A1*
OSCAT-A
Cat2
CatA1
CAT-A
OsCatA
OsCAT
CAT
catA
OSCATA
OsCATc
OsCATA
OsCAT1A
CAT1
OsCAT1
OsCATC
OsCAT2
 CATALASE A CATALASE A
Catalase-2*
Catalase-Al (cDNA clone)
Catalase isozyme A
 2 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Character as QTL - Germination
 GO:0009737 - response to abscisic acid stimulus
GO:0009845 - seed germination
GO:0009725 - response to hormone stimulus
GO:0009739 - response to gibberellin stimulus
GO:0009609 - response to symbiotic bacterium
GO:0010446 - response to alkalinity
GO:0043067 - regulation of programmed cell death
GO:0005634 - nucleus
GO:0010332 - response to gamma radiation
GO:0005737 - cytoplasm
GO:0051775 - response to redox state
GO:0009408 - response to heat
GO:0006979 - response to oxidative stress
GO:0004096 - catalase activity
GO:0042744 - hydrogen peroxide catabolic process
GO:0055114 - oxidation reduction
GO:0042742 - defense response to bacterium
GO:0009414 - response to water deprivation
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0009409 - response to cold
GO:0005777 - peroxisome
GO:0005829 - cytosol
GO:0006801 - superoxide metabolic process
GO:0042542 - response to hydrogen peroxide
GO:0009738 - abscisic acid mediated signaling
GO:0009514 - glyoxysome
GO:0020037 - heme binding
GO:0009651 - response to salt stress
GO:0009751 - response to salicylic acid stimulus
GO:0010029 - regulation of seed germination
 TO:0000031 - silicon sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000605 - hydrogen peroxide content
TO:0000481 - alkali sensitivity
TO:0000207 - plant height
TO:0000136 - relative water content
TO:0001016 - relative chlorophyll content
TO:0000152 - panicle number
TO:0000455 - seed set percent
TO:0000166 - gibberellic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000382 - 1000-seed weight
TO:0002657 - oxidative stress
TO:0000326 - leaf color
TO:0000259 - heat tolerance
 PO:0007022 - seed imbibition stage
PO:0007057 - 0 seed germination stage
PO:0025034 - leaf
PO:0009010 - seed
PO:0009066 - anther
PO:0009047 - stem
Os02g0115700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g02400.2
LOC_Os02g02400.3
LOC_Os02g02400.1
NOE1 CATC
OsCat
OsCatC
OsCATC
OsNOE1
noe1
catC
OsCATC
CAT3
OsCAT3
LLM9428
OsLLM9428
 NITRIC OXIDE EXCESS 1 catalase C
catalase isozyme C
nitric oxide excess1
large lesion mimic mutant 9428
 3 Character as QTL - Yield and productivity
Seed - Physiological traits - Shattering
Vegetative organ - Culm
Tolerance and resistance - Lesion mimic
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Biochemical character
 GO:0009725 - response to hormone stimulus
GO:0042744 - hydrogen peroxide catabolic process
GO:0005982 - starch metabolic process
GO:0050832 - defense response to fungus
GO:0009414 - response to water deprivation
GO:0009642 - response to light intensity
GO:0010939 - regulation of necrotic cell death
GO:0033484 - nitric oxide homeostasis
GO:0031348 - negative regulation of defense response
GO:0009416 - response to light stimulus
GO:0005634 - nucleus
GO:0043067 - regulation of programmed cell death
GO:0004096 - catalase activity
GO:0006979 - response to oxidative stress
GO:0045454 - cell redox homeostasis
GO:0020037 - heme binding
GO:0042742 - defense response to bacterium
GO:0009409 - response to cold
GO:0010229 - inflorescence development
GO:0010150 - leaf senescence
GO:0050777 - negative regulation of immune response
GO:0009404 - toxin metabolic process
GO:0009651 - response to salt stress
GO:0005739 - mitochondrion
GO:0006801 - superoxide metabolic process
GO:0005777 - peroxisome
GO:0042548 - regulation of photosynthesis, light reaction
GO:0009737 - response to abscisic acid stimulus
GO:0009408 - response to heat
 TO:0000455 - seed set percent
TO:0000259 - heat tolerance
TO:0000276 - drought tolerance
TO:0000063 - mimic response
TO:0000357 - growth and development trait
TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
TO:0000249 - leaf senescence
TO:0000615 - abscisic acid sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0002662 - leaf rolling tolerance
TO:0000152 - panicle number
TO:0000621 - inflorescence development trait
TO:0000326 - leaf color
TO:0000447 - filled grain number
TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000460 - light intensity sensitivity
TO:0000019 - seedling height
TO:0002637 - leaf size
TO:0000473 - grain shattering
TO:0000075 - light sensitivity
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
PO:0001054 - 4 leaf senescence stage
PO:0009047 - stem
PO:0025034 - leaf
Os03g0131200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03910.1
XA28 xa28
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 28 Xanthomonas oryzae pv. oryzae resistance 28
 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
 -
XA29 Xa29
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 29 Xanthomonas oryzae pv. oryzae resistance 29
 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
 -
XA30 Xa30(t)
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 30 Xanthomonas oryzae pv. oryzae resistance 30
 11 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
 -
XA31 Xa31
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 31 Xanthomonas oryzae pv. oryzae resistance 31
 4 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
 -
XA32 Xa32
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 32 Xanthomonas oryzae pv. oryzae resistance 32
 11 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
 -
XA22 Xa22
Xa22*
RXa20
Xa(t)
Xa22(t)
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 22 Xanthomonas oryzae pv. oryzae resistance 22
Xanthomonas campestris pv. oryzae resistance-22
Xanthomonas oryzae pv. oryzae resistance-22
Xa22 candidate
 11 Tolerance and resistance - Disease resistance
 GO:0042742 - defense response to bacterium
GO:0040029 - regulation of gene expression, epigenetic
 TO:0000175 - bacterial blight disease resistance
 Os11g0689500/Os11g0689650 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g46250.1
CHT11 Cht11
PR3
OsCHT11
 CHITINASE 11 Chitinase11
Chitinase 11
Pathogenesis related (PR)-3 chitinase 11
Pathogenesis related-3 chitinase 11
PR-3 chitinase 11
 3 Biochemical character
Tolerance and resistance - Disease resistance
 GO:0004568 - chitinase activity
GO:0006032 - chitin catabolic process
GO:0016998 - cell wall macromolecule catabolic process
 Os03g0132900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g04060.1
CHT5 Cht5
OsChia4a
OsChitIVa
Chia4a
ChitIVa
CHIT3
OsCHIT3
 CHITINASE 5 Chitinase5
Chitinase 5
Pathogenesis related (PR)-3 chitinase 5
Pathogenesis related-3 chitinase 5
PR-3 chitinase 5
Class IV chitinase a
Chitinase IVa
Endochitinase A
 4 Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0008061 - chitin binding
GO:0004568 - chitinase activity
GO:0006032 - chitin catabolic process
GO:0006952 - defense response
GO:0046688 - response to copper ion
GO:0016998 - cell wall macromolecule catabolic process
GO:0050832 - defense response to fungus
 TO:0000021 - copper sensitivity
TO:0000255 - sheath blight disease resistance
 Os04g0494100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g41680.1
CHT8 Cht8
OsChia2a
Cht2
Rcht2
Chia2a
CHIT14
OsCHIT14
OsPR3
 CHITINASE 8 Chitinase8
Chitinase 8
Pathogenesis related (PR)-3 chitinase 8
Pathogenesis related-3 chitinase 8
PR-3 chitinase 8
Class II chitinase a
 10 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0042742 - defense response to bacterium
GO:0006032 - chitin catabolic process
GO:0004568 - chitinase activity
GO:0016998 - cell wall macromolecule catabolic process
 TO:0000031 - silicon sensitivity
TO:0000175 - bacterial blight disease resistance
 Os10g0542900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g39680.1
COW1 OsCOW1
oscow1
OsYUC8
YUC8
NAL7
OsNAL7
OsYUCCA8
YUCCA8
FMO
OsFMO(t)
REIN7
YUC8/REIN7
 CONSTITUTIVELY WILTED 1 CONSTITUTIVELY WILTED1
Constitutively wilted 1
NARROW LEAF7
NARROW LEAF 7
YUCCA-LIKE GENE 8
flavin monooxygenase
rice ethylene-insensitive 7
 3 Vegetative organ - Leaf
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0009851 - auxin biosynthetic process
GO:0000139 - Golgi membrane
GO:0009873 - ethylene mediated signaling pathway
GO:0048364 - root development
GO:0004499 - flavin-containing monooxygenase activity
GO:0005654 - nucleoplasm
GO:0009409 - response to cold
GO:0009612 - response to mechanical stimulus
GO:0047434 - indolepyruvate decarboxylase activity
GO:0022603 - regulation of anatomical structure morphogenesis
GO:0010229 - inflorescence development
GO:0030104 - water homeostasis
GO:0009734 - auxin mediated signaling pathway
GO:0050661 - NADP or NADPH binding
GO:0050660 - FAD binding
GO:0048825 - cotyledon development
GO:0009911 - positive regulation of flower development
GO:0007275 - multicellular organismal development
GO:0005829 - cytosol
GO:0051607 - defense response to virus
GO:0048366 - leaf development
 TO:0000655 - leaf development trait
TO:0002665 - root hair length
TO:0000148 - viral disease resistance
TO:0002672 - auxin content
TO:0000227 - root length
TO:0000303 - cold tolerance
TO:0000492 - leaf shape
TO:0000471 - root penetration index
TO:0000656 - root development trait
 PO:0020141 - stem node
PO:0007520 - root development stage
PO:0000025 - root tip
PO:0009047 - stem
PO:0025034 - leaf
Os03g0162000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g06654.2
LOC_Os03g06654.1
SPL17 OsCAD1
CAD1
 SPOTTED LEAF 17 spotted leaf 17
CONSTITUTIVE ACTIVE DEFENSE 1
 1 Character as QTL - Plant growth activity
Tolerance and resistance - Lesion mimic
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
 GO:0016020 - membrane
GO:0005829 - cytosol
GO:0009626 - plant-type hypersensitive response
GO:0009416 - response to light stimulus
GO:0031347 - regulation of defense response
GO:0009863 - salicylic acid mediated signaling pathway
GO:0050832 - defense response to fungus
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0042742 - defense response to bacterium
GO:0006952 - defense response
GO:0005634 - nucleus
GO:0043067 - regulation of programmed cell death
 TO:0000357 - growth and development trait
TO:0002668 - jasmonic acid content
TO:0000605 - hydrogen peroxide content
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000063 - mimic response
TO:0000075 - light sensitivity
TO:0000455 - seed set percent
TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
 PO:0025034 - leaf
Os01g0748900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g54510.1
SPL18 Spl18
OsAT1
AT1
 SPOTTED LEAF 18 spotted leaf 18
 10 Tolerance and resistance - Lesion mimic
Tolerance and resistance - Disease resistance
 GO:0009626 - plant-type hypersensitive response
GO:0042742 - defense response to bacterium
GO:0050832 - defense response to fungus
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups
GO:0006952 - defense response
 TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
TO:0000063 - mimic response
TO:0002670 - momilactone A content
 PO:0020104 - leaf sheath
PO:0009049 - inflorescence
Os10g0195600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g11980.1
AM1 OsAM1
prx53
OsPRX53
 ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1 class III peroxidase 53
 4 Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009610 - response to symbiotic fungus
GO:0044403 - symbiosis, encompassing mutualism through parasitism
 Os04g0134800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g04750.1
GRAS16 AM18
OsAM1
OsGRAS-16
OsGRAS16
GRAS-16
PsiOsGRAS4
PsiGRAS4
 GRAS PROTEIN 16 ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 18
GRAS protein 16
 3 Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0050832 - defense response to fungus
 TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0000255 - sheath blight disease resistance
TO:0000175 - bacterial blight disease resistance
 - LOC_Os03g40080
PT8 OsPT8
PHT1-8
OsPht1;8
Pht1;8
PHT1;8
OsPHT1;8
 PHOSPHATE TRANSPORTER 8 Probable inorganic phosphate transporter 1-8
Plant Phosphate Transporter 1;8
 10 Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Biochemical character
Vegetative organ - Root
 GO:0046688 - response to copper ion
GO:0016021 - integral to membrane
GO:0055085 - transmembrane transport
GO:0005886 - plasma membrane
GO:0002237 - response to molecule of bacterial origin
GO:0048831 - regulation of shoot development
GO:0050832 - defense response to fungus
GO:0005783 - endoplasmic reticulum
GO:0042742 - defense response to bacterium
GO:0002221 - pattern recognition receptor signaling pathway
GO:0002238 - response to molecule of fungal origin
GO:0031348 - negative regulation of defense response
GO:0009733 - response to auxin stimulus
GO:0016036 - cellular response to phosphate starvation
GO:0009737 - response to abscisic acid stimulus
GO:0046685 - response to arsenic
GO:0015293 - symporter activity
GO:0006817 - phosphate transport
GO:0016020 - membrane
GO:0005315 - inorganic phosphate transmembrane transporter activity
GO:0042594 - response to starvation
 TO:0000163 - auxin sensitivity
TO:0000102 - phosphorus sensitivity
TO:0000021 - copper sensitivity
TO:0000043 - root anatomy and morphology trait
TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
TO:0000615 - abscisic acid sensitivity
 PO:0025164 - root epidermal cell
Os10g0444700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g30790.1
LOC_Os10g30790.2
GER5 OsGLP1
GLP1
GER1
GLP110
OsGER1
OsGER5
OsGLP8-14
GLP8-14
OsCDP8.14
CDP8.14
 GERMIN-LIKE PROTEIN 5 Germin-like protein 8-14
Germin-like protein 5
Germin-like protein 1
Germin protein type 1
germin-like protein1
cupin domain protein 8.14
 8 Vegetative organ - Leaf
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
Reproductive organ - panicle
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
 GO:0010224 - response to UV-B
GO:0051555 - flavonol biosynthetic process
GO:0005829 - cytosol
GO:0010229 - inflorescence development
GO:0010109 - regulation of photosynthesis
GO:0051553 - flavone biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0010941 - regulation of cell death
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0009409 - response to cold
 TO:0001027 - net photosynthetic rate
TO:0000621 - inflorescence development trait
TO:0000601 - UV-B light sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000207 - plant height
TO:0000303 - cold tolerance
TO:0000063 - mimic response
TO:0000206 - leaf angle
TO:0000227 - root length
 PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
Os08g0460000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g35760.1
GLP12-1 OsGLP12-1
OsCDP12.1
CDP12.1
 GERMIN-LIKE PROTEIN 12-1 Germin-like protein 12-1
cupin domain protein 12.1
 12 Tolerance and resistance - Disease resistance
Seed - Physiological traits - Storage substances
 GO:0048046 - apoplast
GO:0050832 - defense response to fungus
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
 TO:0000074 - blast disease
 Os12g0154700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g05840.1
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/rice/oryzabase