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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
NOE1 CATC
OsCat
OsCatC
OsCATC
OsNOE1
noe1
catC
OsCATC
CAT3
OsCAT3
LLM9428
OsLLM9428
 NITRIC OXIDE EXCESS 1 catalase C
catalase isozyme C
nitric oxide excess1
large lesion mimic mutant 9428
 3 Biochemical character
Vegetative organ - Leaf
Character as QTL - Plant growth activity
Seed - Physiological traits - Shattering
Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Tolerance and resistance - Lesion mimic
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
 GO:0010939 - regulation of necrotic cell death
GO:0009725 - response to hormone stimulus
GO:0042744 - hydrogen peroxide catabolic process
GO:0005982 - starch metabolic process
GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0009414 - response to water deprivation
GO:0009642 - response to light intensity
GO:0033484 - nitric oxide homeostasis
GO:0010229 - inflorescence development
GO:0031348 - negative regulation of defense response
GO:0042548 - regulation of photosynthesis, light reaction
GO:0005634 - nucleus
GO:0004096 - catalase activity
GO:0006979 - response to oxidative stress
GO:0042742 - defense response to bacterium
GO:0020037 - heme binding
GO:0009404 - toxin metabolic process
GO:0043067 - regulation of programmed cell death
GO:0009651 - response to salt stress
GO:0005739 - mitochondrion
GO:0006801 - superoxide metabolic process
GO:0010150 - leaf senescence
GO:0050777 - negative regulation of immune response
GO:0009737 - response to abscisic acid stimulus
GO:0009408 - response to heat
GO:0005777 - peroxisome
GO:0045454 - cell redox homeostasis
GO:0009416 - response to light stimulus
 TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000074 - blast disease
TO:0000382 - 1000-seed weight
TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0000063 - mimic response
TO:0000455 - seed set percent
TO:0000326 - leaf color
TO:0000019 - seedling height
TO:0002637 - leaf size
TO:0000460 - light intensity sensitivity
TO:0000075 - light sensitivity
TO:0000357 - growth and development trait
TO:0002662 - leaf rolling tolerance
TO:0000621 - inflorescence development trait
TO:0000276 - drought tolerance
TO:0000473 - grain shattering
TO:0000615 - abscisic acid sensitivity
TO:0000152 - panicle number
TO:0000401 - plant growth hormone sensitivity
TO:0000447 - filled grain number
 PO:0001054 - 4 leaf senescence stage
PO:0025034 - leaf
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
Os03g0131200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03910.1
SH-H sh-h
OsSH-H
OsCPL1
CPL1
 SHATTERING-H carboxy-terminal domain phosphatase-like 1
 7 Seed - Physiological traits - Shattering
 GO:0004721 - phosphoprotein phosphatase activity
GO:0005634 - nucleus
GO:0016020 - membrane
 TO:0000473 - grain shattering
 Os07g0207700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g10690.1
LOC_Os07g10690.2
LOC_Os07g10690.3
LOC_Os07g10690.4
LOC_Os07g10690.6
LOC_Os07g10690.7
LOC_Os07g10690.8
qSH3 Shattering (QTL)-3 3 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 -
SH4 sh4
SH4
SHAT2
SHA1
qSH4
QSH4
OsSh4
Sh4
Osh4
OsMSL23
MSL23
 SHATTERING 4 grain shattering quantitative trait locus on chromosome 4
SHATTERING ABORTION2
shattering abortion 2
shattering 4
Shattering1
Myb/SANT-LIKE 23
 4 Seed - Physiological traits - Shattering
Tolerance and resistance - Stress tolerance
 GO:0051409 - response to nitrosative stress
GO:0003677 - DNA binding
GO:0005634 - nucleus
 TO:0000473 - grain shattering
 PO:0009047 - stem
PO:0025034 - leaf
Os04g0670900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g57530.1
TH Th
 HARD THRESHABILITY Hard threshability
 Seed - Physiological traits - Shattering
 GO:0009838 - abscission
 TO:0000406 - panicle threshability
 PO:0009049 - inflorescence
-
SH2 sh2
 SHATTERING 2 shattering2
shattering 2
shattering-2
 1 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 PO:0009010 - seed
-
GH2 gh2
CAD2
CAD
OsCAD2
OsGH2
 GOLD HULL AND INTERNODE 2 gold hull and internode2
gold hull and internode-2
Cinnamyl alcohol dehydrogenase 2
Sinapyl alcohol dehydrogenase
Protein GOLD HULL AND INTERNODE 2
Cinnamyl alcohol dehydrogenase
 2 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Shattering
Coloration - Others
Vegetative organ - Culm
Biochemical character
 GO:0009055 - electron carrier activity
GO:0009809 - lignin biosynthetic process
GO:0020037 - heme binding
GO:0022900 - electron transport chain
GO:0055114 - oxidation reduction
GO:0045551 - cinnamyl-alcohol dehydrogenase activity
GO:0009834 - secondary cell wall biogenesis
GO:0009642 - response to light intensity
GO:0009808 - lignin metabolic process
GO:0009411 - response to UV
GO:0042742 - defense response to bacterium
GO:0008270 - zinc ion binding
 TO:0000733 - lignin biosynthesis trait
TO:0000460 - light intensity sensitivity
TO:0002729 - fruit senescing quality trait
TO:0000160 - UV light sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000426 - internode color
TO:0000264 - lemma and palea color
TO:0000732 - lignin monomer content
TO:0000190_TO:0000426 - "seed coat color" or "internode color"
TO:0000473 - grain shattering
TO:0000051 - stem strength
TO:0000011 - nitrogen sensitivity
 PO:0000039 - shoot axis vascular system
PO:0009010 - seed
PO:0009049 - inflorescence
PO:0020104 - leaf sheath
PO:0020142 - stem internode
PO:0000036 - leaf vascular system
PO:0000003 - whole plant
PO:0009047 - stem
PO:0003011 - root vascular system
PO:0009005 - root
Os02g0187800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g09490.1
image Id ( 6725 )
SH4 sh4
sh4(t)*(sh3)
sh3
sh4
 SHATTERING 4 shattering4
shattering 4
shattering-4
SHATTERING
 3 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 PO:0009010 - seed
-
SH3 Sh3
 SHATTERING 3 Shattering3
Shattering 3
Shattering-3
 4 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 PO:0009010 - seed
-
SH1 sh1
 SHATTERING 1 shattering1
shattering 1
shattering-1
 11 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 PO:0009010 - seed
-
ITH Ith*
Ith
 INHIBITOR FOR DIFFICULT Inhibitor for difficult threshing (easy threshing)
 Seed - Physiological traits - Shattering
 GO:0009838 - abscission
 TO:0000406 - panicle threshability
 PO:0009049 - inflorescence
-
qSH-3-4(t) (qSH3) qSH-3-4(t) (qSH3)
 shattering (QTL)-3-4(t) shattering (QTL)-3-4(t)
 3 Seed - Physiological traits - Shattering
 -
qSH-4-4(t) (qSH4) qSH-4-4(t) (qSH4)
 shattering (QTL)-4-4(t) shattering (QTL)-4-4(t)
 4 Seed - Physiological traits - Shattering
 -
qSH-7-2(t) (qSD7) qSH-7-2(t) (qSD7)
 shattering (QTL)-7-2(t) shattering (QTL)-7-2(t)
 7 Seed - Physiological traits - Shattering
 -
qSH-8-3(t) (qSH8) qSH-8-3(t) (qSH8)
 shattering (QTL)-8-3(t) shattering (QTL)-8-3(t)
 8 Seed - Physiological traits - Shattering
 -
OSKN2 OsKn2
OsH71
HOS9
OSH71
OSH71/Oskn2
 KNOX PROTEIN 2 KNOX protein 2
Oryza sativa homeobox71
Homeobox protein knotted-1-like 10
Homeobox protein OSH71
Homeobox protein HOS9
Homeobox protein knotted-1-like 2
Rice KNOX gene-71
 5 Character as QTL - Germination
Reproductive organ - Heading date
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Seed - Physiological traits - Shattering
Vegetative organ - Culm
 GO:0016020 - membrane
GO:0009629 - response to gravity
GO:0009845 - seed germination
GO:0005783 - endoplasmic reticulum
GO:0010229 - inflorescence development
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009413 - response to flooding
GO:0030912 - response to deep water
GO:0005737 - cytoplasm
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0060867 - fruit abscission
 TO:0002729 - fruit senescing quality trait
TO:0000492 - leaf shape
TO:0000524 - submergence tolerance
TO:0002616 - flowering time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0002693 - gravity response trait
TO:0000473 - grain shattering
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
PO:0000146 - abscission zone
PO:0007045 - coleoptile emergence stage
PO:0025034 - leaf
Os05g0129700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g03884.1
QSH1 qSH1
qsh1
qSH-1
RIL1
OsRIL1
OsBLH5
BLH5
 Shattering (QTL)-1 QTL of seed shattering in chromosome 1
RI-LIKE1
erticillate rachis-like 1
BEL1-like homeodomain protein 5
 1 Reproductive organ - Inflorescence
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Shattering
 GO:0051409 - response to nitrosative stress
GO:0003677 - DNA binding
GO:0060867 - fruit abscission
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010492 - maintenance of shoot apical meristem identity
GO:0010073 - meristem maintenance
GO:0080006 - internode patterning
 TO:0006020 - shoot apical meristem development
TO:0002729 - fruit senescing quality trait
TO:0000473 - grain shattering
TO:0000547 - primary branch number
TO:0000207 - plant height
TO:0006014 - phyllotaxy
TO:0000142 - secondary branching of inflorescence
TO:0000145 - internode length
 Os01g0848400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g62920.1
qSH11 qSH11
 shattering (QTL)-11 11 Seed - Physiological traits - Shattering
 -
qSH12 qSH12
 shattering (QTL)-12 12 Seed - Physiological traits - Shattering
 -
qSH2 qSH2
 shattering (QTL)-2 2 Seed - Physiological traits - Shattering
 -
qSH5 qSH5
 Shattering (QTL)-5 5 Seed - Physiological traits - Shattering
 -
qSH8 sh8
 shattering(QTL)-8 shattering8
 8 Seed - Physiological traits - Shattering
 -
SNB AP2/EREBP#073
AP2/EREBP73
AP2-3
OsAP2-3
SSH1
OsSSH1
OsSNB
DLN181
DLN181a
DLN181b
OsDLN181
OsDLN181a
OsDLN181b
SUI4
OsSUI4
SUI4/SNB
 SUPERNUMERARY BRACT GENE Supernumerary Bract gene
Supernumerary Bract
SUPERNUMERARY BRACT
supernumerary bract
transcription factor; SNB
APETALA2/ethylene-responsive element binding protein 73
APETALA2-3
suppression of shattering1
DLN repressor 181
DLN motif protein 181
shortened uppermost internode 4
 7 Reproductive organ - Pollination, fertilization, fertility - Sterility
Reproductive organ - panicle
Character as QTL - Yield and productivity
Seed - Physiological traits - Shattering
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0009908 - flower development
GO:0009809 - lignin biosynthetic process
GO:0003700 - transcription factor activity
GO:0010022 - meristem determinacy
GO:0010077 - maintenance of inflorescence meristem identity
GO:0010092 - specification of organ identity
GO:0005634 - nucleus
GO:0048506 - regulation of timing of meristematic phase transition
GO:0045449 - regulation of transcription
GO:0080006 - internode patterning
GO:0009740 - gibberellic acid mediated signaling
GO:0009736 - cytokinin mediated signaling
GO:0001558 - regulation of cell growth
GO:0009832 - plant-type cell wall biogenesis
 TO:0000382 - 1000-seed weight
TO:0000733 - lignin biosynthesis trait
TO:0000731 - lignin content
TO:0002729 - fruit senescing quality trait
TO:0000473 - grain shattering
TO:0000391 - seed size
TO:0000590 - grain weight
TO:0000396 - grain yield
TO:0000734 - grain length
TO:0000397 - grain size
TO:0000622 - flower development trait
TO:0000650 - lemma length
TO:0000208 - lemma number
TO:0000499 - flower anatomy and morphology trait
TO:0000145 - internode length
TO:0000207 - plant height
TO:0000225 - stamen number
TO:0006030 - spikelet meristem identity
TO:0006032 - panicle size
TO:0000436 - spikelet sterility
TO:0000209 - palea number
TO:0000671 - pre-flowering flower abortion
 PO:0009029 - stamen
PO:0006327 - spikelet meristem
PO:0009030 - carpel
PO:0009036 - lodicule
PO:0009039 - glume
PO:0007615 - flower development stage
PO:0009034 - flower bract
Os07g0235800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g13170.2
LOC_Os07g13170.1
XTH12 OsXTH12
 XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 12 xyloglucan endotransglucosylase/hydrolase
xyloglucan endotransglucosylase 12
 6 Biochemical character
Seed - Physiological traits - Shattering
 GO:0000325 - plant-type vacuole
GO:0006073 - cellular glucan metabolic process
GO:0005618 - cell wall
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762 - xyloglucan:xyloglucosyl transferase activity
GO:0048046 - apoplast
GO:0010365 - positive regulation of ethylene biosynthetic process
GO:0009830 - cell wall modification during abscission
 TO:0000473 - grain shattering
TO:0000476 - growth hormone content
TO:0006007 - polysaccharide content
TO:0002729 - fruit senescing quality trait
 PO:0009049 - inflorescence
PO:0000146 - abscission zone
Os06g0696600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g48180.1
LOC_Os06g48180.2
SH5 OsSH5
RI
SH5/RI
OsRI
VPB1
OsVPB1
OsBLH9
BLH9
 SHATTERING 5 Shattering-5
erticillate rachis
verticillate primary branch 1
BEL1-like homeodomain protein 9
 5 Reproductive organ - Panicle, Mode of branching
Seed - Physiological traits - Shattering
Reproductive organ - Inflorescence
Character as QTL - Yield and productivity
 GO:0003677 - DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010432 - bract development
GO:0005634 - nucleus
GO:0009809 - lignin biosynthetic process
GO:0010073 - meristem maintenance
GO:0010492 - maintenance of shoot apical meristem identity
GO:0080006 - internode patterning
GO:0010081 - regulation of inflorescence meristem growth
GO:0010065 - primary meristem tissue development
GO:0010229 - inflorescence development
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048507 - meristem development
GO:0010014 - meristem initiation
GO:0009755 - hormone-mediated signaling
GO:0010077 - maintenance of inflorescence meristem identity
 TO:0000142 - secondary branching of inflorescence
TO:0000733 - lignin biosynthesis trait
TO:0006020 - shoot apical meristem development
TO:0006014 - phyllotaxy
TO:0000456 - spikelet number
TO:0000547 - primary branch number
TO:0002759 - grain number
TO:0000473 - grain shattering
TO:0000557 - secondary branch number
TO:0000052 - primary branching of inflorescence
TO:0000396 - grain yield
TO:0000621 - inflorescence development trait
TO:0000373 - inflorescence anatomy and morphology trait
 PO:0006327 - spikelet meristem
PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0020104 - leaf sheath
PO:0009005 - root
PO:0001083 - inflorescence development stage
PO:0000230 - inflorescence meristem
PO:0009047 - stem
PO:0020148 - shoot apical meristem
PO:0009010 - seed
Os05g0455200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g38120.1
SH6 SH6
 SHATTERING 6 5 Seed - Physiological traits - Shattering
 -
4CL3 Os4CL3
Os4CL2
Os4CL
4CL2
4CL
 4-COUMARATE:COENZYME A LIGASE 3 4-coumarate:coenzyme A ligase 3
4-hydroxycinnamate CoA ligase 2
 2 Seed - Physiological traits - Shattering
Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
 GO:0009813 - flavonoid biosynthetic process
GO:0005524 - ATP binding
GO:0009809 - lignin biosynthetic process
GO:0009807 - lignan biosynthetic process
GO:0009834 - secondary cell wall biogenesis
GO:0052386 - cell wall thickening
GO:0050832 - defense response to fungus
GO:0009698 - phenylpropanoid metabolic process
GO:0016207 - 4-coumarate-CoA ligase activity
GO:0009411 - response to UV
 TO:0000290 - flavonoid content
TO:0000074 - blast disease
TO:0000011 - nitrogen sensitivity
TO:0000051 - stem strength
TO:0000733 - lignin biosynthesis trait
TO:0000473 - grain shattering
TO:0002729 - fruit senescing quality trait
TO:0000160 - UV light sensitivity
TO:0000439 - fungal disease resistance
TO:0000731 - lignin content
 Os02g0177600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g08100.1
SH11 OsJAmyb
JAmyb
OsJAMyb
OsMYB21
MYB21
Os2R_MYB91
2R_MYB91
OgSH11
OsSH11
MYB2-109
OsMYB2-109
 SEED SHATTERING 11 JA-regulated myb transcription factor
R2R3-MYB Transcription Factor 91
Seed Shattering 11
R2R3-MYB transcription factor 2-109
 11 Character as QTL - Plant growth activity
Seed - Physiological traits - Shattering
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Other
Tolerance and resistance - Insect resistance
 GO:0009651 - response to salt stress
GO:0009753 - response to jasmonic acid stimulus
GO:0009628 - response to abiotic stimulus
GO:0051607 - defense response to virus
GO:0042594 - response to starvation
GO:0016036 - cellular response to phosphate starvation
GO:0005634 - nucleus
GO:0009646 - response to absence of light
GO:0009742 - brassinosteroid mediated signaling
GO:0010150 - leaf senescence
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0042742 - defense response to bacterium
GO:0009408 - response to heat
GO:0002213 - defense response to insect
GO:0050832 - defense response to fungus
GO:0006952 - defense response
GO:0003677 - DNA binding
GO:0009809 - lignin biosynthetic process
 TO:0000129 - false smut disease resistance
TO:0000473 - grain shattering
TO:0000424 - brown planthopper resistance
TO:0002664 - leaf yellowing tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0006001 - salt tolerance
TO:0000148 - viral disease resistance
TO:0000112 - disease resistance
TO:0000731 - lignin content
TO:0000259 - heat tolerance
TO:0001016 - relative chlorophyll content
TO:0000249 - leaf senescence
TO:0000175 - bacterial blight disease resistance
TO:0000460 - light intensity sensitivity
TO:0000102 - phosphorus sensitivity
TO:0000168 - abiotic stress trait
TO:0000074 - blast disease
 PO:0006503 - fruit abscission zone
PO:0025034 - leaf
PO:0009047 - stem
PO:0009039 - glume
Os11g0684000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g45740.1
SH1 YAB2
OsYAB2
OsSh1
Sh1
OsFIL2
OsSH1
Osh1
 SHATTERING1 YABBY2
YABBY 2
OsYABBY2
Os YABBY2
Shattering1
Shattering 1
FIL homolog 2
 3 Other
Seed - Physiological traits - Shattering
 GO:0005634 - nucleus
GO:0046872 - metal ion binding
 PO:0009038 - palea
PO:0009037 - lemma
Os03g0650000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g44710.3
LOC_Os03g44710.2
LOC_Os03g44710.1
SHAT1 OsSHAT1
AP2/EREBP#043
AP2/EREBP43
AP2-5
DLN124
OsDLN124
ObSHAT1
OgSHAT1
OrSHAT1
 SHATTERING ABORTION 1 SHATTERING ABORTION1
shattering abortion 1
APETALA2/ethylene-responsive element binding protein 43
APETALA2-5
DLN repressor 124
DLN motif protein 124
 4 Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Shattering
 GO:0051409 - response to nitrosative stress
GO:0003677 - DNA binding
GO:0006351 - transcription, DNA-dependent
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
 TO:0000473 - grain shattering
 Os04g0649100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g55560.4
LOC_Os04g55560.3
LOC_Os04g55560.2
SH Sh(t)*
Sh6
 SHATTERING Shattering
Seed shattering
Shattering-6
 4 Seed - Physiological traits - Shattering
 TO:0000473 - grain shattering
 PO:0009010 - seed
-
SLR1 slr1-1
slr1
slr
GAI
OsGAI
OsSLR1
Os SLR1
OsRGA1
OsGRAS-18
OsGRAS-18
GRAS-18
GRAS18
SLR-1
 SLENDER RICE1 slender rice1-1
slender rice
Giberellin-insensitive gene homolog
DELLA protein SLR1
Protein SLENDER RICE1
Gibberellic acid-insensitive mutant protein
Slender Rice 1
SLENDER 1
SLENDER1
GRAS protein 18
 3 Seed - Physiological traits - Shattering
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Vegetative organ - Root
 GO:0051707 - response to other organism
GO:0040008 - regulation of growth
GO:0048364 - root development
GO:0009414 - response to water deprivation
GO:0009745 - sucrose mediated signaling
GO:0010119 - regulation of stomatal movement
GO:0046822 - regulation of nucleocytoplasmic transport
GO:0009834 - secondary cell wall biogenesis
GO:0052386 - cell wall thickening
GO:0030244 - cellulose biosynthetic process
GO:0010218 - response to far red light
GO:0009416 - response to light stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009637 - response to blue light
GO:0010162 - seed dormancy
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0009651 - response to salt stress
GO:0009938 - negative regulation of gibberellic acid mediated signaling
GO:0009740 - gibberellic acid mediated signaling
GO:0010468 - regulation of gene expression
GO:0045449 - regulation of transcription
GO:0045926 - negative regulation of growth
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009409 - response to cold
GO:0009413 - response to flooding
GO:0002213 - defense response to insect
GO:0009612 - response to mechanical stimulus
GO:0042127 - regulation of cell proliferation
GO:0009739 - response to gibberellin stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0050832 - defense response to fungus
GO:0042742 - defense response to bacterium
 TO:0002729 - fruit senescing quality trait
TO:0000159 - blue light sensitivity
TO:0000017 - anatomy and morphology related trait
TO:0000276 - drought tolerance
TO:0000205 - white-backed planthopper resistance
TO:0000401 - plant growth hormone sensitivity
TO:0000576 - stem length
TO:0000075 - light sensitivity
TO:0000492 - leaf shape
TO:0000303 - cold tolerance
TO:0000328 - sucrose content
TO:0000084 - root number
TO:0006001 - salt tolerance
TO:0000286 - submergence sensitivity
TO:0000520 - stomatal closure rate
TO:0006002 - proline content
TO:0000112 - disease resistance
TO:0000473 - grain shattering
TO:0000175 - bacterial blight disease resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000357 - growth and development trait
TO:0000130 - far red light sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000255 - sheath blight disease resistance
TO:0000145 - internode length
TO:0000615 - abscisic acid sensitivity
TO:0000227 - root length
TO:0006036 - stem elongation
TO:0000253 - seed dormancy
TO:0000207 - plant height
 PO:0007089 - stem elongation stage
PO:0020142 - stem internode
PO:0009025 - vascular leaf
PO:0000003 - whole plant
PO:0009006 - shoot system
PO:0009005 - root
Os03g0707600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g49990.1
ISH3 iSh3
iSh3(t)
 INHIBITOR FOR SH3-GLA inhibitor for Sh3-gla
 4 Seed - Physiological traits - Shattering
 -
SH5-GLUM Sh5-glum
 SHATTERING Shattering 5-glu
 5 Seed - Physiological traits - Shattering
 -
SH6-MER Sh6-mer
 SHATTERING Shattering 6-mer
 5 Seed - Physiological traits - Shattering
 -
qSH-1-1(t) (QSh1) qSH-1-1(t) (QSh1)
 Shattering (QTL)-1-1(t) Shattering (QTL)-1-1(t)
 1 Seed - Physiological traits - Shattering
 -
qSH-2-1(t) (QSh2) qSH-2-1(t) (QSh2)
 Shattering (QTL)-2-1(t) Shattering (QTL)-2-1(t)
 2 Seed - Physiological traits - Shattering
 -
qSH-3-1(t) (QSh3) qSH-3-1(t) (QSh3)
 Shattering (QTL)-3-1(t) Shattering (QTL)-3-1(t)
 3 Seed - Physiological traits - Shattering
 -
qSH-4-1(t) (QSh4) qSH-4-1(t) (QSh4)
 Shattering (QTL)-4-1(t) Shattering (QTL)-4-1(t)
 4 Seed - Physiological traits - Shattering
 -
qSH-5-1(t) (QSh5) qSH-5-1(t) (QSh5)
 Shattering (QTL)-5-1(t) Shattering (QTL)-5-1(t)
 5 Seed - Physiological traits - Shattering
 -
qSH-9-1(t) (QSh9) qSH-9-1(t) (QSh9)
 Shattering (QTL)-9-1(t) Shattering (QTL)-9-1(t)
 9 Seed - Physiological traits - Shattering
 -
qSH-1-2(t) (qSHT-1) qSH-1-2(t) (qSHT-1)
 shattering (QTL)-1-2(t) shattering (QTL)-1-2(t)
 1 Seed - Physiological traits - Shattering
 -
qSH-4-2(t) (qSHT-4) qSH-4-2(t) (qSHT-4)
 seed shattering (QTL)-4-2(t) seed shattering (QTL)-4-2(t)
 4 Seed - Physiological traits - Shattering
 -
qSH-8-1(t) (qSHT-8) qSH-8-1(t) (qSHT-8)
 shattering (QTL)-8-1(t) shattering (QTL)-8-1(t)
 8 Seed - Physiological traits - Shattering
 -
qSH-11-1(t) (qSHT-11) qSH-11-1(t) (qSHT-11)
 shattering (QTL)-11-1(t) shattering (QTL)-11-1(t)
 11 Seed - Physiological traits - Shattering
 -
qSH-1-3(t) (sh1.1) qSH-1-3(t) (sh1.1)
 shatterring (QTL)-1-3(t) shatterring (QTL)-1-3(t)
 1 Seed - Physiological traits - Shattering
 -
qSH-3-2(t) (sh3.1) qSH-3-2(t) (sh3.1)
 shattering (QTL)-3-2(t) shattering (QTL)-3-2(t)
 3 Seed - Physiological traits - Shattering
 -
qSH-4-3(t) (sh4.1) qSH-4-3(t) (sh4.1)
 shattering (QTL)-4-3(t) shattering (QTL)-4-3(t)
 4 Seed - Physiological traits - Shattering
 -
qSH-3-3(t) (sh3.2) qSH-3-3(t) (sh3.2)
 shattering (QTL)-3-3(t) shattering (QTL)-3-3(t)
 3 Seed - Physiological traits - Shattering
 -
qSH-7-1(t) (sh7.1) qSH-7-1(t) (sh7.1)
 shattering (QTL)-7-1(t) shattering (QTL)-7-1(t)
 7 Seed - Physiological traits - Shattering
 -
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