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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
RPBF OsDof3
OsDOF3
OsEnS-34
OsDof10
Dof10
OsDof-10
OsDOF1
DOF1
DOF3
OsRPBF
OsDOF7
 RICE PROLAMIN BOX BINDING FACTOR rice (Oryza sativa) prolamin box binding factor
pyrimidine box-binding protein
endosperm-specific gene 34
Dof zinc factor 10
Dof transcription factor 10
DNA BINDING WITH ONE FINGER 10
 2 Seed - Physiological traits - Storage substances
Tolerance and resistance
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Longevity
Seed - Physiological traits
 GO:0006952 - defense response
GO:0009651 - response to salt stress
GO:0008270 - zinc ion binding
GO:0009414 - response to water deprivation
GO:0010029 - regulation of seed germination
GO:0003677 - DNA binding
GO:0006979 - response to oxidative stress
GO:0006970 - response to osmotic stress
GO:0045449 - regulation of transcription
 TO:0000179 - biotic stress trait
TO:0006004 - raffinose content
TO:0002673 - amino acid content
TO:0000250 - vigor related trait
TO:0000276 - drought tolerance
TO:0000430 - germination rate
TO:0006001 - salt tolerance
TO:0002657 - oxidative stress
TO:0000095 - osmotic response sensitivity
 PO:0009010 - seed
PO:0001170 - seed development stage
Os02g0252400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15350.1
LOX-L2 OsLOX-L2
LOX1.1
LOX L-2
LOX-2
OsLOX2
LOX2
 LIPOXYGENASE L2 Lipoxygenase 2
Lipoxygenase L-2
 3 Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Physiological traits - Longevity
 GO:0009266 - response to temperature stimulus
GO:0010030 - positive regulation of seed germination
GO:0055114 - oxidation reduction
GO:0048364 - root development
GO:0051707 - response to other organism
GO:0050832 - defense response to fungus
GO:0016165 - lipoxygenase activity
GO:0002213 - defense response to insect
GO:0005737 - cytoplasm
GO:0009793 - embryonic development ending in seed dormancy
GO:0009816 - defense response to bacterium, incompatible interaction
GO:0005506 - iron ion binding
GO:0009753 - response to jasmonic acid stimulus
GO:0009611 - response to wounding
GO:0009507 - chloroplast
GO:0009737 - response to abscisic acid stimulus
GO:0031408 - oxylipin biosynthetic process
 TO:0000403 - leaf-folder resistance
TO:0000620 - embryo development trait
TO:0000074 - blast disease
TO:0000435 - seed longevity
TO:0000172 - jasmonic acid sensitivity
TO:0000432 - temperature response trait
 PO:0009005 - root
PO:0007631 - plant embryo stage
PO:0007057 - 0 seed germination stage
PO:0009049 - inflorescence
PO:0009047 - stem
Os03g0738600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g52860.1
HSP18.0-CII OsHSP18.0-CII
Oshsp18.0-CII
OsHSP18.0
OsHSP18.2
 18.0 KDA CLASS II HEAT SHOCK PROTEIN 18.0 kDa class II heat shock protein
small heat shock protein 18.0
 1 Seed - Physiological traits - Longevity
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0005737 - cytoplasm
GO:0009408 - response to heat
GO:0007568 - aging
GO:0010431 - seed maturation
GO:0042742 - defense response to bacterium
GO:0009651 - response to salt stress
GO:0005635 - nuclear envelope
GO:0046907 - intracellular transport
GO:0009751 - response to salicylic acid stimulus
GO:0080142 - regulation of salicylic acid biosynthetic process
 TO:0006001 - salt tolerance
TO:0000435 - seed longevity
TO:0002661 - seed maturation
TO:0000250 - vigor related trait
TO:0000175 - bacterial blight disease resistance
TO:0000259 - heat tolerance
TO:0000430 - germination rate
 PO:0007632 - seed maturation stage
PO:0009010 - seed
Os01g0184100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g08860.1
LOC_Os01g08860.2
AMY3E Amy3D/E*(RAmy3D/E)
alpha Amy8
alphaAmy8
AmyII-3
AMY1.4
Amy3E
Amy3D/E*
RAmy3D/E
Amy9
RAmy3E
alphaAmy8-C
AMY3E/AMY1.4
OsAmy3E
OsRamy3E
RAmy3E
 ALPHA-AMYLASE 3E Alpha-amylase3E
Alpha-amylase isozyme 3E precursor
Alpha-amylase isozyme 3E
Alpha-amylase-3E
Amylase-9
Alpha-amylase-3D
 8 Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Vegetative organ - Culm
Biochemical character
Character as QTL - Germination
 GO:0009737 - response to abscisic acid stimulus
GO:0005987 - sucrose catabolic process
GO:0010182 - sugar mediated signaling
GO:0010212 - response to ionizing radiation
GO:0009651 - response to salt stress
GO:0001666 - response to hypoxia
GO:0009270 - response to humidity
GO:0009408 - response to heat
GO:0009739 - response to gibberellin stimulus
GO:0009409 - response to cold
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0051775 - response to redox state
GO:0080006 - internode patterning
GO:0004556 - alpha-amylase activity
GO:0005509 - calcium ion binding
GO:0005975 - carbohydrate metabolic process
GO:0009845 - seed germination
GO:0005983 - starch catabolic process
 TO:0000161 - radiation response trait
TO:0000166 - gibberellic acid sensitivity
TO:0000259 - heat tolerance
TO:0000266 - chalky endosperm
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000441 - humidity related trait
TO:0006001 - salt tolerance
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
TO:0000345 - seed viability
TO:0000015 - oxygen sensitivity
TO:0010001 - percent germination
TO:0000544 - mesocotyl length
 PO:0007057 - 0 seed germination stage
PO:0001170 - seed development stage
PO:0009010 - seed
Os08g0473600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g36900.1
LOC_Os08g36900.2
SODCC2 Cu/Zn-SOD
Cu/Zn- SOD
OsCu-ZnSOD2
Cu-ZnSOD2
OsSODB
OsSOD3
SodCc2
Os SodCc2
sodB
OsSodB
RSODB
OssodCc1
OsCSD1.1
CSD1.1
OsCDS1
OsSOD3-CU/Zn
SOD3-CU/Zn
CuZnSOD2
Cu/ZnSOD2
OsCu/ZnSOD2
OsCSD1
CSD1
CuZnSOD1
OsCuZnSOD2
OsCSD4
CSD4
OsCSD3
CSD3
Cu/Zn-SOD3
OsSODC2
SODC2
 CYTOSOLIC SUPEROXIDASE DISMUTASE 2 Cu/Zn-superoxide dismutase
superoxide dismutase B
copper/zinc-superoxide dismutase
"Cu
Zn superoxide dismutase"
cytosolic copper/zinc-superoxide dismutase 2
"Superoxide dismutase (Cu-Zn) 4
cytosolic"
Cu-dependent SOD 1.1
cytosolic CuZn SOD 4
Copper/zinc Superoxide Dismutase 3
copper-zinc superoxide dismutase 3
 7 Character as QTL - Germination
Seed - Physiological traits - Longevity
Biochemical character
Vegetative organ - Culm
Reproductive organ - panicle
Character as QTL - Yield and productivity
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
 GO:0009787 - regulation of abscisic acid mediated signaling
GO:0010193 - response to ozone
GO:0042542 - response to hydrogen peroxide
GO:0009651 - response to salt stress
GO:0051775 - response to redox state
GO:0046688 - response to copper ion
GO:0019430 - removal of superoxide radicals
GO:0008270 - zinc ion binding
GO:0009409 - response to cold
GO:0009687 - abscisic acid metabolic process
GO:0006970 - response to osmotic stress
GO:0005507 - copper ion binding
GO:0009416 - response to light stimulus
GO:0010039 - response to iron ion
GO:0012501 - programmed cell death
GO:0004784 - superoxide dismutase activity
GO:0009739 - response to gibberellin stimulus
GO:0046685 - response to arsenic
GO:0042742 - defense response to bacterium
GO:0006979 - response to oxidative stress
GO:0005737 - cytoplasm
GO:0016020 - membrane
GO:0009741 - response to brassinosteroid stimulus
GO:0009845 - seed germination
GO:0005634 - nucleus
 TO:0000605 - hydrogen peroxide content
TO:0000040 - panicle length
TO:0000207 - plant height
TO:0006001 - salt tolerance
TO:0000075 - light sensitivity
TO:0000303 - cold tolerance
TO:0002677 - brassinosteroid sensitivity
TO:0000447 - filled grain number
TO:0002657 - oxidative stress
TO:0000166 - gibberellic acid sensitivity
TO:0000435 - seed longevity
TO:0002667 - abscisic acid content
TO:0000095 - osmotic response sensitivity
 PO:0009089 - endosperm
PO:0007632 - seed maturation stage
PO:0009030 - carpel
PO:0007057 - 0 seed germination stage
PO:0005360 - aleurone layer
PO:0009009 - plant embryo
PO:0025034 - leaf
PO:0009006 - shoot system
PO:0007022 - seed imbibition stage
Os07g0665200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g46990.2
LOC_Os07g46990.1
V2 v2
mGmk
GMK
Gmk
pt/mtGK
pt/mt GK
OsV2
OsGMK
 VIRESCENT 2 virescent2
virescent 2
virescent-2
Gluanylate kinase
plastid/mitochondrial guanylate kinase
 3 Seed - Physiological traits - Longevity
Coloration - Chlorophyll
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
 GO:0009408 - response to heat
GO:0009270 - response to humidity
GO:0015995 - chlorophyll biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0010001 - percent germination
TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
TO:0000432 - temperature response trait
TO:0000250 - vigor related trait
TO:0000435 - seed longevity
TO:0000345 - seed viability
TO:0000441 - humidity related trait
TO:0000259 - heat tolerance
 PO:0009025 - vascular leaf
Os03g0320900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g20460.2
LOC_Os03g20460.1
image Id ( 6741 )
SOD2 OsSOD2
OsSOD2-Cu/Zn
SOD2-Cu/Zn
OsCSD3
CSD3
CuZnSOD3
OsCSD2
CSD2
Cu/Zn-SOD2
 SUPEROXIDE DISMUTASE 2 superoxide dismutase 2
Copper/zinc Superoxide Dismutase 2
copper-zinc superoxide dismutase 2
 3 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Longevity
 GO:0009651 - response to salt stress
GO:0008270 - zinc ion binding
GO:0004784 - superoxide dismutase activity
GO:0006979 - response to oxidative stress
GO:0016020 - membrane
GO:0005507 - copper ion binding
GO:0005737 - cytoplasm
GO:0005773 - vacuole
GO:0005777 - peroxisome
GO:0005634 - nucleus
GO:0009787 - regulation of abscisic acid mediated signaling
GO:0009687 - abscisic acid metabolic process
GO:0019430 - removal of superoxide radicals
 TO:0000435 - seed longevity
TO:0002657 - oxidative stress
TO:0002667 - abscisic acid content
TO:0006001 - salt tolerance
 PO:0009009 - plant embryo
Os03g0219200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g11960.1
LOC_Os03g11960.2
LOC_Os03g11960.3
LOC_Os03g11960.4
GH3-2 OsGH3-2
OsGH3.2
GH3.2
 GRETCHENHAGEN 3-2 OsGRETCHENHAGEN3-2
GRETCHENHAGEN3-2
GRETCHEN HAGEN3-2
Gretchen Hagen 3 protein 2
 1 Vegetative organ - Root
Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Biochemical character
Seed - Physiological traits
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Vegetative organ - Leaf
Reproductive organ - panicle
 GO:0005737 - cytoplasm
GO:0048364 - root development
GO:0009416 - response to light stimulus
GO:0010252 - auxin homeostasis
GO:0009683 - indoleacetic acid metabolic process
GO:0080006 - internode patterning
GO:0009651 - response to salt stress
GO:0009739 - response to gibberellin stimulus
GO:0009409 - response to cold
GO:0016881 - acid-amino acid ligase activity
GO:0010229 - inflorescence development
GO:0009610 - response to symbiotic fungus
GO:0051607 - defense response to virus
GO:0050832 - defense response to fungus
GO:0009733 - response to auxin stimulus
GO:0010930 - negative regulation of auxin mediated signaling pathway
GO:0010279 - indole-3-acetic acid amido synthetase activity
 TO:0002667 - abscisic acid content
TO:0000547 - primary branch number
TO:0000557 - secondary branch number
TO:0000345 - seed viability
TO:0000206 - leaf angle
TO:0000135 - leaf length
TO:0006032 - panicle size
TO:0000544 - mesocotyl length
TO:0002672 - auxin content
TO:0000163 - auxin sensitivity
TO:0006001 - salt tolerance
TO:0000145 - internode length
TO:0000020 - black streak dwarf virus resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000303 - cold tolerance
TO:0000074 - blast disease
TO:0000207 - plant height
TO:0000435 - seed longevity
TO:0000656 - root development trait
TO:0000621 - inflorescence development trait
TO:0000734 - grain length
TO:0000227 - root length
TO:0002685 - crown root number
TO:0001013 - lateral root number
TO:0002674 - tryptophan content
TO:0000040 - panicle length
 PO:0005052 - plant callus
PO:0000258 - root cortex
PO:0020121 - lateral root
PO:0007520 - root development stage
PO:0009005 - root
PO:0009049 - inflorescence
PO:0009010 - seed
PO:0001083 - inflorescence development stage
PO:0009066 - anther
Os01g0764800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g55940.1
HSP71.1 OsHsp71.1
OsHSP71.1
OsMED37_3
MED37_3
Hsp70-10
OsHsp70-10
 71.1 KDA CLASS I HEAT SHOCK PROTEIN 71.1 kDa heat shock protein
71.1-kD heat shock protein
Mediator 37_3
Heat shock protein 70-10
 3 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Character as QTL - Grain quality
Seed - Physiological traits - Longevity
 GO:0005524 - ATP binding
GO:0009270 - response to humidity
GO:0006950 - response to stress
GO:0048316 - seed development
GO:0046686 - response to cadmium ion
GO:0009651 - response to salt stress
GO:0009408 - response to heat
GO:0009409 - response to cold
 TO:0000382 - 1000-seed weight
TO:0000402 - grain width
TO:0000653 - seed development trait
TO:0000396 - grain yield
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
TO:0010001 - percent germination
 PO:0001170 - seed development stage
PO:0009046 - flower
PO:0009047 - stem
PO:0025034 - leaf
PO:0009005 - root
Os03g0276500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g16860.1
LOC_Os03g16860.2
BIP2 OsBiP2
Bip2
Hsp70-13
OsHsp70-13
 BINDING PROTEIN 2 ER chaperone BiP2
Binding protein 2
Heat shock protein 70-13
 3 Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Biochemical character
 GO:0009408 - response to heat
GO:0009270 - response to humidity
GO:0005524 - ATP binding
 TO:0000250 - vigor related trait
TO:0000259 - heat tolerance
TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0000435 - seed longevity
TO:0010001 - percent germination
 Os03g0710500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g50250.1
FBOX516 OsFbx352
OsFbox516
Fbx352
Fbox516
Os_F0046
OsFBX352
FBX352
 F-BOX PROTEIN 516 F-box gene 352
F-box domain protein 352
F-box protein 516
F-box-type E3 ubiquitin ligase X352
 10 Character as QTL - Grain quality
Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Other
 GO:0009408 - response to heat
GO:0009270 - response to humidity
 TO:0000250 - vigor related trait
TO:0010001 - percent germination
TO:0000259 - heat tolerance
TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0000435 - seed longevity
 Os10g0127900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g03850.1
LOC_Os10g03850.2
LOC_Os10g03850.3
LOC_Os10g03850.4
LOC_Os10g03850.5
qLG-2 qLG-2
 seed longevity (QTL)-2 seed longevity (QTL)-2
 2 Seed - Physiological traits - Longevity
 -
qLG-4 qLG-4
 seed longevity (QTL)-4 seed longevity (QTL)-4
 4 Seed - Physiological traits - Longevity
 -
qLG-9 qLG-9
 seed longevity (QTL)-9 seed longevity (QTL)-9
 9 Seed - Physiological traits - Longevity
 -
_ OsNPK1-PK
NPK1-PK
OsMKKK62
MKKK62
OsMAPKKK62
MAPKKK62
MEK7
OsMEK7
MAPKKK17
OsMAPKKK17
 _ NPK1-related protein kinase
MAPK kinase kinase 62
MAPK/ERK kinase 7
 1 Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
 GO:0009408 - response to heat
GO:0005524 - ATP binding
GO:0009737 - response to abscisic acid stimulus
GO:0009409 - response to cold
GO:0048653 - anther development
GO:0010373 - negative regulation of gibberellin biosynthetic process
GO:0009609 - response to symbiotic bacterium
GO:0004674 - protein serine/threonine kinase activity
GO:2000033 - regulation of seed dormancy
GO:0009270 - response to humidity
GO:0009753 - response to jasmonic acid stimulus
 TO:0000441 - humidity related trait
TO:0000172 - jasmonic acid sensitivity
TO:0000303 - cold tolerance
TO:0010001 - percent germination
TO:0000615 - abscisic acid sensitivity
TO:0000250 - vigor related trait
TO:0000435 - seed longevity
TO:0000253 - seed dormancy
TO:0000421 - pollen fertility
TO:0002675 - gibberellic acid content
TO:0000259 - heat tolerance
TO:0000455 - seed set percent
TO:0000345 - seed viability
 PO:0009066 - anther
PO:0009005 - root
PO:0009047 - stem
PO:0001004 - anther development stage
Os01g0699600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g50420.1
_ RAG2
RA14B
RA14
OsEnS-98
 _ rice allergen 14B
endosperm-specific gene 98
 7 Seed - Morphological traits
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
 GO:0010431 - seed maturation
GO:0010951 - negative regulation of endopeptidase activity
GO:0009651 - response to salt stress
GO:0005615 - extracellular space
GO:0009408 - response to heat
GO:0016068 - type I hypersensitivity
GO:0004867 - serine-type endopeptidase inhibitor activity
GO:0009270 - response to humidity
 TO:0000590 - grain weight
TO:0000602 - total fat content
TO:0000162 - seed quality
TO:0000396 - grain yield
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0000259 - heat tolerance
TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0000435 - seed longevity
TO:0010001 - percent germination
TO:0000250 - vigor related trait
TO:0000598 - protein content
TO:0000382 - 1000-seed weight
TO:0006001 - salt tolerance
TO:0000653 - seed development trait
TO:0000397 - grain size
 PO:0007632 - seed maturation stage
Os07g0214300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g11380.1
LOC_Os07g11380.2
_ _ 1 Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Seed - Physiological traits - Longevity
Biochemical character
 GO:0005764 - lysosome
GO:0051603 - proteolysis involved in cellular protein catabolic process
GO:0004197 - cysteine-type endopeptidase activity
GO:0008234 - cysteine-type peptidase activity
GO:0006508 - proteolysis
GO:0009270 - response to humidity
GO:0009408 - response to heat
GO:0005615 - extracellular space
 TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0010001 - percent germination
TO:0000250 - vigor related trait
TO:0000435 - seed longevity
TO:0000259 - heat tolerance
 Os01g0971400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g73980.1
LOC_Os01g73980.2
ABA2 OsABA2
OsSDR
SDR
 ABA DEFICIENT 2 abscisic acid-deficient 2
 3 Tolerance and resistance - Disease resistance
Character as QTL - Grain quality
Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0010182 - sugar mediated signaling
GO:0009750 - response to fructose stimulus
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010301 - xanthoxin dehydrogenase activity
GO:0009738 - abscisic acid mediated signaling
GO:0005982 - starch metabolic process
GO:0006109 - regulation of carbohydrate metabolic process
GO:0006749 - glutathione metabolic process
GO:0006110 - regulation of glycolysis
GO:0006111 - regulation of gluconeogenesis
GO:0006099 - tricarboxylic acid cycle
GO:0009408 - response to heat
GO:0006561 - proline biosynthetic process
GO:0005829 - cytosol
GO:0042742 - defense response to bacterium
GO:0046686 - response to cadmium ion
GO:0000172 - ribonuclease MRP complex
GO:0006979 - response to oxidative stress
GO:0009414 - response to water deprivation
GO:0009688 - abscisic acid biosynthetic process
 TO:0000435 - seed longevity
TO:0000172 - jasmonic acid sensitivity
TO:0000696 - starch content
TO:0000345 - seed viability
TO:0000259 - heat tolerance
TO:0000031 - silicon sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000333 - sugar content
TO:0000605 - hydrogen peroxide content
TO:0000207 - plant height
TO:0000590 - grain weight
TO:0000490 - protein composition related trait
TO:0000430 - germination rate
TO:0002657 - oxidative stress
TO:0002667 - abscisic acid content
TO:0000276 - drought tolerance
 Os03g0810800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g59610.1
ENO2 OsEno2
Eno2
 ENOLASE 2 enolase
enolase 2
 3 Seed - Physiological traits - Longevity
Biochemical character
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
 GO:0009651 - response to salt stress
GO:0006096 - glycolysis
GO:0009409 - response to cold
GO:0009416 - response to light stimulus
GO:0009506 - plasmodesma
GO:0009507 - chloroplast
GO:0009737 - response to abscisic acid stimulus
GO:0046686 - response to cadmium ion
GO:0048046 - apoplast
GO:0005740 - mitochondrial envelope
GO:0005886 - plasma membrane
GO:0005507 - copper ion binding
GO:0000015 - phosphopyruvate hydratase complex
GO:0004634 - phosphopyruvate hydratase activity
GO:0000287 - magnesium ion binding
 TO:0000435 - seed longevity
TO:0000391 - seed size
TO:0000345 - seed viability
TO:0000181 - seed weight
 PO:0009010 - seed
Os03g0248600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g14450.1
LOC_Os03g14450.2
FSE6 OsGINT1
GINT1
OsFSE6
OsGT64B
GT64B
 FLOURY AND SHRUNKEN ENDOSPERM 6 GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1
floury and shrunken endosperm 6
glycosyltransferase 64B
 5 Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Longevity
Biochemical character
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
 GO:0009414 - response to water deprivation
GO:0009960 - endosperm development
GO:0016757 - transferase activity, transferring glycosyl groups
GO:0009270 - response to humidity
GO:0016021 - integral to membrane
GO:0009660 - amyloplast organization
GO:0009651 - response to salt stress
GO:0009409 - response to cold
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009408 - response to heat
GO:0030259 - lipid glycosylation
GO:0006486 - protein amino acid glycosylation
GO:0040007 - growth
 TO:0000615 - abscisic acid sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000104 - floury endosperm
TO:0000487 - endosperm color
TO:0002730 - grain shape
TO:0000259 - heat tolerance
TO:0000696 - starch content
TO:0000196 - amylose content
TO:0000441 - humidity related trait
TO:0000345 - seed viability
TO:0000598 - protein content
TO:0000604 - fat and essential oil content
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
TO:0010001 - percent germination
 PO:0009049 - inflorescence
PO:0007633 - endosperm development stage
Os05g0540000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g46260.1
PIMT1 OsPIMT1
OsPIMT1'
 PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1 Protein repair L-isoaspartyl methyltransferase 1
PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 1
L-isoaspartylmethyltransferase 1
 8 Seed - Physiological traits
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Longevity
Biochemical character
Character as QTL - Grain quality
 GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
GO:0009737 - response to abscisic acid stimulus
GO:0030091 - protein repair
GO:0048316 - seed development
GO:0005829 - cytosol
GO:0005737 - cytoplasm
GO:0007568 - aging
GO:0009845 - seed germination
 TO:0000345 - seed viability
TO:0000149 - seed width
TO:0000146 - seed length
TO:0000181 - seed weight
TO:0000391 - seed size
TO:0000435 - seed longevity
TO:0000430 - germination rate
TO:0000615 - abscisic acid sensitivity
TO:0000653 - seed development trait
 PO:0007632 - seed maturation stage
PO:0009009 - plant embryo
PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
PO:0009089 - endosperm
Os08g0557000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g44280.1
LOC_Os08g44280.2
PIMT2 OsPIMT2
OsPIMT2'-1
OsPIMT2'-2
deltaOsPIMT2
 PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2 Protein repair L-isoaspartyl methyltransferase 2
PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 2
 8 Seed - Physiological traits - Longevity
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Biochemical character
 GO:0030091 - protein repair
GO:0005634 - nucleus
GO:0048316 - seed development
GO:0009507 - chloroplast
GO:0009737 - response to abscisic acid stimulus
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
GO:0009845 - seed germination
 TO:0000653 - seed development trait
TO:0000345 - seed viability
TO:0000615 - abscisic acid sensitivity
TO:0000146 - seed length
TO:0000391 - seed size
TO:0000435 - seed longevity
TO:0000181 - seed weight
TO:0000149 - seed width
 PO:0001170 - seed development stage
PO:0009009 - plant embryo
PO:0007057 - 0 seed germination stage
PO:0025034 - leaf
Os04g0481400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g40540.1
LOC_Os04g40540.2
LOC_Os04g40540.3
GOLS1 OsGolS1
GolS1
OsGolS2
GolS2
 GALACTINOL SYNTHASE 1 galactinol synthase 1
galactinol synthase 2
 3 Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Physiological traits
Seed - Physiological traits - Longevity
 GO:0009628 - response to abiotic stimulus
GO:0009408 - response to heat
GO:0009270 - response to humidity
GO:0047216 - inositol 3-alpha-galactosyltransferase activity
GO:0009609 - response to symbiotic bacterium
GO:0009409 - response to cold
GO:0009751 - response to salicylic acid stimulus
GO:0006970 - response to osmotic stress
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009737 - response to abscisic acid stimulus
GO:0006012 - galactose metabolic process
GO:0048511 - rhythmic process
 TO:0000259 - heat tolerance
TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
TO:0000441 - humidity related trait
TO:0006004 - raffinose content
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
TO:0000168 - abiotic stress trait
TO:0000095 - osmotic response sensitivity
TO:0000303 - cold tolerance
 PO:0020104 - leaf sheath
PO:0025034 - leaf
PO:0009005 - root
PO:0009006 - shoot system
PO:0001170 - seed development stage
Os03g0316200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g20120.1
PMEI12 OsPMEI12
 PECTIN METHYLESTERASES INHIBITOR 12 pectin methylesterases inhibitor 12
 3 Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - panicle
Vegetative organ - Culm
Biochemical character
Character as QTL - Grain quality
Seed - Physiological traits - Longevity
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Plant growth activity
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Character as QTL - Yield and productivity
 GO:0051510 - regulation of unidimensional cell growth
GO:0009408 - response to heat
GO:0009270 - response to humidity
GO:0009664 - plant-type cell wall organization
GO:0046686 - response to cadmium ion
GO:0048653 - anther development
GO:0044038 - cell wall macromolecule biosynthetic process
GO:0043414 - biopolymer methylation
GO:0055073 - cadmium ion homeostasis
GO:0009846 - pollen germination
GO:0009739 - response to gibberellin stimulus
GO:0060416 - response to growth hormone stimulus
GO:0005634 - nucleus
GO:0005886 - plasma membrane
GO:0048046 - apoplast
GO:0046910 - pectinesterase inhibitor activity
 TO:0000441 - humidity related trait
TO:0000214 - anther shape
TO:0000531 - anther length
TO:0000472 - vascular bundle number
TO:0000442 - plant fresh weight
TO:0000633 - relative total dry weight
TO:0000218 - pollen abortion type
TO:0000590 - grain weight
TO:0000181 - seed weight
TO:0000455 - seed set percent
TO:0000040 - panicle length
TO:0000207 - plant height
TO:0000145 - internode length
TO:0000421 - pollen fertility
TO:0000357 - growth and development trait
TO:0000019 - seedling height
TO:0000369 - vegetative growth time
TO:0000166 - gibberellic acid sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0010001 - percent germination
TO:0006007 - polysaccharide content
TO:0000259 - heat tolerance
TO:0000250 - vigor related trait
TO:0000435 - seed longevity
TO:0000345 - seed viability
 PO:0001004 - anther development stage
PO:0001017 - M germinated pollen stage
Os03g0100100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g01020.1
TPR46 OsTPR046
TPR046
OsTPR46
 TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 46 Tetratricopeptide repeat domain containing protein 46
 2 Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
 GO:0009270 - response to humidity
GO:0048281 - inflorescence morphogenesis
GO:0010229 - inflorescence development
GO:0009408 - response to heat
GO:0010077 - maintenance of inflorescence meristem identity
 TO:0000557 - secondary branch number
TO:0000435 - seed longevity
TO:0000050 - inflorescence branching
TO:0000441 - humidity related trait
TO:0000259 - heat tolerance
TO:0000250 - vigor related trait
TO:0010001 - percent germination
TO:0000621 - inflorescence development trait
TO:0000142 - secondary branching of inflorescence
TO:0000371 - yield trait
TO:0000345 - seed viability
 PO:0009049 - inflorescence
PO:0001083 - inflorescence development stage
Os02g0494000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g29190.1
PRO13B.7 pro13b.7
OsPRO13B.7
 13 KDA PROLAMIN B.7 13 kDa prolamin B.7
 5 Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
 GO:0009408 - response to heat
GO:0005783 - endoplasmic reticulum
GO:0042735 - protein body
GO:0009270 - response to humidity
 TO:0000441 - humidity related trait
TO:0000259 - heat tolerance
TO:0010001 - percent germination
TO:0000345 - seed viability
TO:0000435 - seed longevity
TO:0000250 - vigor related trait
 PO:0009089 - endosperm
Os05g0328632 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26250.1
LOC_Os05g26359.1
LOC_Os05g26400.1
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/rice/oryzabase