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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
FLO27 OsbZIP58
bZIP58
OsEnS-92
OsSMF1
SMF1
OsRISBZ1
RISBZ1/bZIP58
RISBZ1
OsFLO27
 FLOURY ENDOSPERM 27 bZIP transcription factor 58
rice seed b-Zipper 1
endosperm-specific gene 92
seed maturation factor 1
rice seed basic leucine zipper 1
RICE SEED bZIP1
 7 Other
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Physiological traits - Dormancy
 GO:0034976 - response to endoplasmic reticulum stress
GO:0010581 - regulation of starch biosynthetic process
GO:0009960 - endosperm development
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009408 - response to heat
GO:0005634 - nucleus
GO:0030968 - endoplasmic reticulum unfolded protein response
GO:0012501 - programmed cell death
GO:0010431 - seed maturation
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0009845 - seed germination
 TO:0002673 - amino acid content
TO:0000100 - shrunken endosperm
TO:0000487 - endosperm color
TO:0000490 - protein composition related trait
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000402 - grain width
TO:0000734 - grain length
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0002656 - starch grain shape
TO:0000104 - floury endosperm
TO:0002661 - seed maturation
TO:0000432 - temperature response trait
TO:0002653 - endosperm storage protein content
TO:0000259 - heat tolerance
 PO:0007632 - seed maturation stage
PO:0009089 - endosperm
PO:0007633 - endosperm development stage
PO:0005360 - aleurone layer
PO:0007057 - 0 seed germination stage
Os07g0182000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g08420.1
CDPK31 OsCDPK31
OsCPK31
CPK31
 CALCIUM-DEPENDENT PROTEIN KINASE 31 calcium-dependent protein kinase
 Seed - Morphological traits - Endosperm
Biochemical character
Seed
 GO:0010857 - calcium-dependent protein kinase activity
GO:0031000 - response to caffeine
GO:0010431 - seed maturation
GO:0043036 - starch grain
 TO:0002661 - seed maturation
 PO:0009001 - fruit
PO:0007633 - endosperm development stage
-
SSIVB OsSSIVb
SSIV-2
OsSSIV-2
SSIVb
SSIV-2
SSIV2
OsSSIV2
 SOLUBLE STARCH SYNTHASE IVB SOLUBLE STARCH SYNTHASE IV-2
 5 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
 GO:0009269 - response to desiccation
GO:0009507 - chloroplast
GO:0009011 - starch synthase activity
GO:0009960 - endosperm development
GO:0009501 - amyloplast
GO:0005978 - glycogen biosynthetic process
GO:0019252 - starch biosynthetic process
 TO:0000394 - drought related trait
 PO:0009089 - endosperm
PO:0007633 - endosperm development stage
PO:0025034 - leaf
Os05g0533600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g45720.4
LOC_Os05g45720.3
LOC_Os05g45720.2
LOC_Os05g45720.1
GIF1 gif1
CIN2
OsCIN2
OsGIF1
WB1
OsWB1
GIF1/OsCIN2
 GRAIN INCOMPLETE FILLING 1 grain incomplete filling 1
"Beta-fructofuranosidase
insoluble isoenzyme 2"
Sucrose hydrolase 2
Invertase 2
Cell wall beta-fructosidase 2
cell-wall invertase 2
White Belly 1
 4 Seed - Morphological traits
Character as QTL - Grain quality
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
 GO:0005987 - sucrose catabolic process
GO:0016787 - hydrolase activity
GO:0048046 - apoplast
GO:0051707 - response to other organism
GO:0009960 - endosperm development
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0004564 - beta-fructofuranosidase activity
GO:0004575 - sucrose alpha-glucosidase activity
GO:0005618 - cell wall
GO:0005975 - carbohydrate metabolic process
GO:0005986 - sucrose biosynthetic process
 TO:0000391 - seed size
TO:0000300 - glucose content
TO:0000447 - filled grain number
TO:0000311 - invertase activity
TO:0000456 - spikelet number
TO:0000382 - 1000-seed weight
TO:0000734 - grain length
TO:0000590 - grain weight
TO:0000328 - sucrose content
TO:0002661 - seed maturation
TO:0000455 - seed set percent
TO:0000487 - endosperm color
TO:0000196 - amylose content
TO:0000397 - grain size
TO:0000575 - endosperm related trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000696 - starch content
TO:0000304 - seed thickness
TO:0000592 - 1000-dehulled grain weight
TO:0000149 - seed width
TO:0000396 - grain yield
TO:0006005 - fructose content
TO:0000221 - glume color
TO:0000097 - amylopectin content
TO:0000146 - seed length
TO:0002656 - starch grain shape
 PO:0006326 - inflorescence internode
PO:0009089 - endosperm
PO:0005019 - carpel vascular system
PO:0007633 - endosperm development stage
PO:0000025 - root tip
PO:0009084 - pericarp
Os04g0413500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g33740.1
YUCCA9 OsYUCCA9
OsYUC9
YUC9
 YUCCA-LIKE GENE 9 (YUCCA-like gene)
 1 Biochemical character
Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0010262 - somatic embryogenesis
GO:0009851 - auxin biosynthetic process
GO:0048316 - seed development
GO:0004499 - flavin-containing monooxygenase activity
 TO:0000653 - seed development trait
TO:0002672 - auxin content
TO:0000266 - chalky endosperm
 PO:0000423 - plant zygote
PO:0009009 - plant embryo
PO:0009089 - endosperm
PO:0009006 - shoot system
PO:0009005 - root
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0001170 - seed development stage
Os01g0273800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g16714.1
AGPL2 OsAGPL2
osagpl2
APL2
OsAPL2
AGPiso
sh2
Sh2
GIF2
GAS1
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2 sativa ADP-glucose pyrophosphorylase large subunit 2
ADP-glucose Pyrophosphorylase large subunit 2
AGPase large subunit 2
AGPase large unit 2
ADP-glucose pyrophosphorylase subunit SH2
GRAIN INCOMPLETE FILLING 2
 1 Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Biochemical character
 GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0009058 - biosynthetic process
GO:0009269 - response to desiccation
GO:0009536 - plastid
GO:0019252 - starch biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0005978 - glycogen biosynthetic process
GO:0048316 - seed development
GO:0010431 - seed maturation
GO:0010581 - regulation of starch biosynthetic process
GO:0010035 - response to inorganic substance
GO:0009651 - response to salt stress
GO:0005829 - cytosol
 TO:0000394 - drought related trait
TO:0000104 - floury endosperm
TO:0000480 - nutrient sensitivity
TO:0000382 - 1000-seed weight
TO:0000590 - grain weight
TO:0006001 - salt tolerance
TO:0000653 - seed development trait
TO:0002661 - seed maturation
TO:0000100 - shrunken endosperm
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000696 - starch content
 PO:0007632 - seed maturation stage
PO:0009001 - fruit
PO:0001170 - seed development stage
PO:0007022 - seed imbibition stage
PO:0009010 - seed
PO:0009089 - endosperm
Os01g0633100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g44220.7
LOC_Os01g44220.6
LOC_Os01g44220.5
LOC_Os01g44220.1
LOC_Os01g44220.2
LOC_Os01g44220.3
LOC_Os01g44220.4
AGPL4 OsAGPL4
APL4
OsAPL4
OsSTA193
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4 sativa ADP-glucose pyrophosphorylase large subunit 4
ADP-glucose Pyrophosphorylase large subunit 4
AGPase large subunit 4
AGPase large unit 4
 7 Seed - Morphological traits - Endosperm
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0009536 - plastid
GO:0009058 - biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
 TO:0000696 - starch content
TO:0000106 - male sterility type
 PO:0009066 - anther
PO:0009089 - endosperm
Os07g0243200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g13980.1
AGPS2 OsAGPS2a
AGPS2A
AGPS2B
OsAGPS2
osagps2
APS2
APS2a
APS2b
AGPS2a
APGS2b
OsAGPS2b
AGPP
GAS8
OsAPS2
OsAPS2a
OsAPS2b
 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2 sativa ADP-glucose pyrophosphorylase small subunit 2a
sativa ADP-glucose pyrophosphorylase small subunit 2
ADP-glucose Pyrophosphorylase small subunit 2
AGPase small subunit 2
ADP-glucose pyrophosphorylase small subunit 2a
ADP-glucose pyrophosphorylase 51kD subunit
ADP-glucose pyrophosphorylase small unit 2
ADP-glucose pyrophosphorylase small subunit 2b
 8 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
 GO:0009408 - response to heat
GO:0010035 - response to inorganic substance
GO:0009269 - response to desiccation
GO:0005829 - cytosol
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0005524 - ATP binding
GO:0009501 - amyloplast
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0009415 - response to water
GO:0005978 - glycogen biosynthetic process
GO:0000003 - reproduction
GO:0009791 - post-embryonic development
GO:0009651 - response to salt stress
GO:0005982 - starch metabolic process
 TO:0000480 - nutrient sensitivity
TO:0000696 - starch content
TO:0000237 - water stress trait
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0000100 - shrunken endosperm
TO:0002661 - seed maturation
TO:0000394 - drought related trait
TO:0000382 - 1000-seed weight
TO:0000011 - nitrogen sensitivity
TO:0000333 - sugar content
 PO:0009010 - seed
PO:0025034 - leaf
PO:0009089 - endosperm
PO:0007632 - seed maturation stage
PO:0007022 - seed imbibition stage
Os08g0345800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g25734.2
LOC_Os08g25734.1
AGPL1 OsAGPL1
OsAPL1
APL1
OsAGPL3
AGPL3
OsAGPSL3
AGPSL3
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1 sativa ADP-glucose pyrophosphorylase large subunit 1
ADP-glucose Pyrophosphorylase large subunit 1
AGPase large subunit 1
ADP-glucose pyrophosphorylase large subunit 3
AGPase large unit 3
 3 Vegetative organ - Culm
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0005978 - glycogen biosynthetic process
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0009959 - negative gravitropism
GO:0009536 - plastid
GO:0009058 - biosynthetic process
GO:0009629 - response to gravity
 TO:0000696 - starch content
TO:0000567 - tiller angle
TO:0002693 - gravity response trait
 PO:0025034 - leaf
Os03g0735000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g52460.1
HAP2I OsHAP2I
NF-YA
CBF-B
NF-YA8
OsNF-YA8
OsEnS-136
NFYA8
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A8
NUCLEAR FACTOR-Y subunit NF-YA8
NF-YA transcription factor 8
endosperm-specific gene 136
NF-YA subunit 8
NF-YA family 8
 10 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Other
Character as QTL - Grain quality
Character as QTL - Yield and productivity
 GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0051607 - defense response to virus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010167 - response to nitrate
GO:0043565 - sequence-specific DNA binding
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0006350 - transcription
 TO:0000598 - protein content
TO:0000011 - nitrogen sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000148 - viral disease resistance
TO:0000266 - chalky endosperm
TO:0000696 - starch content
 PO:0009089 - endosperm
Os10g0397900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g25850.1
HAP3D OsHAP3D
OsEnS-83
OsNF-YB9
NF-YB9
NFYB9
OsLEC1A
LEC1A
 HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX HAP3 subunit D
LEC1-type 3 subunit protein-D
endosperm-specific gene 83
NUCLEAR FACTOR-Y subunit B9
NUCLEAR FACTOR-Y subunit NF-YB9
HAP3 SUBUNIT D
NF-YB subunit 9
NF-YB family 9
 6 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Reproductive organ - Pollination, fertilization, fertility - Sterility
Seed - Physiological traits - Storage substances
Other
Seed - Morphological traits - Grain shape
Character as QTL - Plant growth activity
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Reproductive organ - Heading date
 GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0048316 - seed development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009790 - embryonic development
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0006350 - transcription
GO:0010581 - regulation of starch biosynthetic process
GO:0005737 - cytoplasm
GO:0042127 - regulation of cell proliferation
GO:0009845 - seed germination
 TO:0000734 - grain length
TO:0000399 - grain thickness
TO:0000391 - seed size
TO:0000266 - chalky endosperm
TO:0000304 - seed thickness
TO:0000149 - seed width
TO:0000146 - seed length
TO:0000137 - days to heading
TO:0000421 - pollen fertility
TO:0000696 - starch content
TO:0000485 - sterility related trait
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000639 - seed fertility
TO:0000382 - 1000-seed weight
TO:0000162 - seed quality
TO:0000222 - head rice
TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
TO:0000487 - endosperm color
TO:0020033 - glume length
TO:0000653 - seed development trait
TO:0000276 - drought tolerance
TO:0000211 - gel consistency
TO:0000196 - amylose content
 PO:0020094 - plant egg cell
PO:0000003 - whole plant
PO:0009009 - plant embryo
PO:0009089 - endosperm
PO:0009010 - seed
PO:0001170 - seed development stage
Os06g0285200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g17480.1
HAP3K OsHAP3K/OsNF-YB1
OsHAP3K
OsNF-YB1
NF-YB1
nf-yb1
OsLEC1
OsNF-YB-1
NFYB1
OsEnS-41
 HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX Nuclear transcription factor Y subunit B-1
CCAAT-binding transcription factor subunit NF-YB1
leafy cotyledon 1
endosperm-specific gene 41
Nuclear Factor YB1
NUCLEAR FACTOR-Y subunit B1
NUCLEAR FACTOR-Y subunit NF-YB1
NF-YB subunit 1
NF-YB family 1
 2 Other
Character as QTL - Germination
Character as QTL - Grain quality
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Seed - Morphological traits
Seed - Morphological traits - Grain shape
 GO:0048316 - seed development
GO:0005634 - nucleus
GO:0008283 - cell proliferation
GO:0009960 - endosperm development
GO:0009651 - response to salt stress
GO:0010162 - seed dormancy
GO:0009738 - abscisic acid mediated signaling
GO:0010431 - seed maturation
GO:0005829 - cytosol
GO:0045449 - regulation of transcription
GO:0010600 - regulation of auxin biosynthetic process
GO:0006350 - transcription
GO:0010581 - regulation of starch biosynthetic process
GO:0005737 - cytoplasm
GO:0043565 - sequence-specific DNA binding
GO:0009737 - response to abscisic acid stimulus
GO:0048623 - seed germination on parent plant
 TO:0000379 - cool paste viscosity
TO:0002672 - auxin content
TO:0000399 - grain thickness
TO:0002661 - seed maturation
TO:0000397 - grain size
TO:0000391 - seed size
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000184 - seed anatomy and morphology trait
TO:0000408 - hot paste viscosity
TO:0000409 - peak viscosity
TO:0000619 - vivipary
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000382 - 1000-seed weight
TO:0000734 - grain length
TO:0000253 - seed dormancy
TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0000196 - amylose content
TO:0000604 - fat and essential oil content
TO:0000696 - starch content
TO:0000396 - grain yield
TO:0000653 - seed development trait
 PO:0005360 - aleurone layer
PO:0007633 - endosperm development stage
PO:0007632 - seed maturation stage
PO:0001170 - seed development stage
PO:0009089 - endosperm
PO:0006220 - central endosperm
Os02g0725900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g49410.1
BT1-1 OsBT1-1
OsEnS-29
OsBT1
OsBt1
BT1
Bt1
OsBt1-1
shr3
OsBT1-2
BT1-2
 BRITTLE 1-1 Brittle-1-1
endosperm-specific gene 29
BRITTLE1
shrunken3
 2 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Biochemical character
 GO:0009408 - response to heat
GO:0033097 - amyloplast membrane
GO:0022891 - substrate-specific transmembrane transporter activity
GO:0010431 - seed maturation
GO:0003735 - structural constituent of ribosome
GO:0016021 - integral to membrane
GO:0006412 - translation
GO:0010581 - regulation of starch biosynthetic process
GO:0010162 - seed dormancy
GO:0055085 - transmembrane transport
GO:0010021 - amylopectin biosynthetic process
GO:0019252 - starch biosynthetic process
GO:0015711 - organic anion transport
GO:0005975 - carbohydrate metabolic process
GO:0005982 - starch metabolic process
GO:0009660 - amyloplast organization
 TO:0002661 - seed maturation
TO:0000382 - 1000-seed weight
TO:0000487 - endosperm color
TO:0000253 - seed dormancy
TO:0000259 - heat tolerance
TO:0002658 - starch grain synthesis
TO:0000100 - shrunken endosperm
TO:0000696 - starch content
TO:0000196 - amylose content
 PO:0009089 - endosperm
PO:0007632 - seed maturation stage
Os02g0202400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g10800.3
LOC_Os02g10800.2
LOC_Os02g10800.1
SSG SUBSTANDARD STARCH GRAIN Seed - Morphological traits - Endosperm
 -
EMF2A OsEMF2a
OsEMF2
EMF2
ZOS4-02
OsZOS4-02
OsPcG3
PcG3
 EMBRYONIC FLOWER 2A EMBRYONIC FLOWER 2
Embryonic Flower2a
zinc-finger protein TFIIIA class of Oryza sativa 4-02
ZPT of Oryza sativa 4-02
Polycomb group protein 3
 4 Seed - Morphological traits
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
Reproductive organ - Heading date
 GO:0009651 - response to salt stress
GO:0008270 - zinc ion binding
GO:0010342 - cellularization of endosperm
GO:0051726 - regulation of cell cycle
GO:0048316 - seed development
GO:0006325 - chromatin organization
GO:0009691 - cytokinin biosynthetic process
GO:0005622 - intracellular
GO:0007275 - multicellular organismal development
GO:0046872 - metal ion binding
GO:0005634 - nucleus
GO:0010600 - regulation of auxin biosynthetic process
GO:0009960 - endosperm development
GO:0010581 - regulation of starch biosynthetic process
GO:0009790 - embryonic development
GO:0030154 - cell differentiation
GO:0031490 - chromatin DNA binding
GO:0009910 - negative regulation of flower development
GO:0007349 - cellularization
GO:0006349 - genetic imprinting
GO:0010431 - seed maturation
 TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000487 - endosperm color
TO:0000345 - seed viability
TO:0000620 - embryo development trait
TO:0002653 - endosperm storage protein content
TO:0002661 - seed maturation
TO:0000696 - starch content
TO:0000328 - sucrose content
TO:0006005 - fructose content
TO:0000300 - glucose content
TO:0002660 - cytokinin content
TO:0002672 - auxin content
TO:0006001 - salt tolerance
TO:0000622 - flower development trait
TO:0006020 - shoot apical meristem development
 PO:0007631 - plant embryo stage
PO:0025034 - leaf
PO:0009005 - root
PO:0009006 - shoot system
PO:0007633 - endosperm development stage
PO:0001170 - seed development stage
PO:0009049 - inflorescence
PO:0009089 - endosperm
PO:0025281 - pollen
Os04g0162100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g08034.6
LOC_Os04g08034.5
LOC_Os04g08034.1
LOC_Os04g08034.2
LOC_Os04g08034.3
LOC_Os04g08034.4
CLF OsSET24
SET24
OsSDG711
SDG711
EZ1
OsEZ1
OsCLF
OsPcG1
PcG1
 CURLY LEAF SET protein 24
polycomb protein EZ1
SET DOMAIN GROUP 711
Polycomb group protein 1
 6 Reproductive organ - panicle
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Physiological traits - Storage substances
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Other
Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed
 GO:0001558 - regulation of cell growth
GO:0006349 - genetic imprinting
GO:0031519 - PcG protein complex
GO:0046976 - histone methyltransferase activity (H3-K27 specific)
GO:0005634 - nucleus
GO:0042127 - regulation of cell proliferation
GO:0009823 - cytokinin catabolic process
GO:0048316 - seed development
GO:0034968 - histone lysine methylation
GO:0003700 - transcription factor activity
GO:0006306 - DNA methylation
GO:0010048 - vernalization response
GO:0009908 - flower development
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0009651 - response to salt stress
GO:0016571 - histone methylation
GO:0031047 - gene silencing by RNA
GO:0045857 - negative regulation of molecular function, epigenetic
GO:0048574 - long-day photoperiodism, flowering
GO:0051567 - histone H3-K9 methylation
GO:0003727 - single-stranded RNA binding
GO:0010229 - inflorescence development
GO:0009690 - cytokinin metabolic process
GO:0003677 - DNA binding
GO:0009691 - cytokinin biosynthetic process
GO:0040029 - regulation of gene expression, epigenetic
GO:0009960 - endosperm development
GO:0009294 - DNA mediated transformation
GO:0009965 - leaf morphogenesis
GO:0010228 - vegetative to reproductive phase transition
GO:0005982 - starch metabolic process
GO:0040014 - regulation of multicellular organism growth
 TO:0006032 - panicle size
TO:0002637 - leaf size
TO:0000558 - small vascular bundle number
TO:0002758 - flag leaf lamina width
TO:0000132 - basal internode diameter
TO:0000145 - internode length
TO:0000590 - grain weight
TO:0000152 - panicle number
TO:0000653 - seed development trait
TO:0000040 - panicle length
TO:0002660 - cytokinin content
TO:0006001 - salt tolerance
TO:0000231 - endospermless
TO:0000539 - large vascular bundle number
TO:0000357 - growth and development trait
TO:0000397 - grain size
TO:0000207 - plant height
TO:0000339 - stem thickness
TO:0000621 - inflorescence development trait
TO:0002616 - flowering time
TO:0000391 - seed size
TO:0000696 - starch content
 PO:0007633 - endosperm development stage
PO:0020056 - tegmen
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
PO:0009089 - endosperm
PO:0000230 - inflorescence meristem
Os06g0275500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g16390.1
FIE1 OsFIE1
OsWD40-154
OsEnS-116
OsFIE1/OsWD40-154
WD40-154
OsPcG6
PcG6
 FERTILIZATION-INDEPENDENT ENDOSPERM 1 FERTILIZATION-INDEPENDENT ENDOSPERM1
Fertilization-Independent Endosperm 1
dwarf and flower aberrant mutant
endosperm-specific gene 116
Polycomb group protein 6
 8 Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Seed - Morphological traits
Vegetative organ - Culm
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
 GO:0009409 - response to cold
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0010342 - cellularization of endosperm
GO:0009960 - endosperm development
GO:0010187 - negative regulation of seed germination
GO:0000003 - reproduction
GO:0051782 - negative regulation of cell division
GO:0010373 - negative regulation of gibberellin biosynthetic process
GO:0043078 - polar nucleus
GO:0006349 - genetic imprinting
GO:0043470 - regulation of carbohydrate catabolic process
GO:0009651 - response to salt stress
GO:0048316 - seed development
GO:0009790 - embryonic development
GO:0048598 - embryonic morphogenesis
GO:0019216 - regulation of lipid metabolic process
GO:0048623 - seed germination on parent plant
GO:0010162 - seed dormancy
GO:0016571 - histone methylation
 TO:0000465 - mineral and ion content related trait
TO:0000291 - carbohydrate content
TO:0000107 - endosperm storage protein-1 content
TO:0002680 - albumin content
TO:0000710 - globulin protein content
TO:0000281 - metabolite content related trait
TO:0000604 - fat and essential oil content
TO:0002675 - gibberellic acid content
TO:0002667 - abscisic acid content
TO:0000064 - embryo related trait
TO:0000619 - vivipary
TO:0000253 - seed dormancy
TO:0002673 - amino acid content
TO:0000653 - seed development trait
TO:0000391 - seed size
TO:0000455 - seed set percent
TO:0002653 - endosperm storage protein content
TO:0006001 - salt tolerance
 PO:0020090 - embryo sac central cell
PO:0007633 - endosperm development stage
PO:0007632 - seed maturation stage
PO:0020056 - tegmen
PO:0001170 - seed development stage
PO:0009089 - endosperm
Os08g0137250 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g04290.1
FIE2 OsFIE2
FIE
OsWD40-153
WD40-153
OsDWD46
DWD46
OsPcG5
PcG5
 FERTILIZATION-INDEPENDENT ENDOSPERM 2 FERTILIZATION-INDEPENDENT ENDOSPERM2
Fertilization-Independent Endosperm 2
Polycomb protein OsFIE2
DWD motif- containing protein 46
Polycomb group protein 5
 8 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Character as QTL - Yield and productivity
Seed - Morphological traits - Endosperm
Character as QTL - Plant growth activity
 GO:0009651 - response to salt stress
GO:0051782 - negative regulation of cell division
GO:0043078 - polar nucleus
GO:0005886 - plasma membrane
GO:0009409 - response to cold
GO:0005634 - nucleus
GO:0070734 - histone H3-K27 methylation
GO:0009960 - endosperm development
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0016571 - histone methylation
GO:0019954 - asexual reproduction
GO:0040029 - regulation of gene expression, epigenetic
GO:0005737 - cytoplasm
GO:0000003 - reproduction
GO:0006349 - genetic imprinting
GO:0009793 - embryonic development ending in seed dormancy
 TO:0000207 - plant height
TO:0000484 - seed shape
TO:0000357 - growth and development trait
TO:0000019 - seedling height
TO:0006001 - salt tolerance
TO:0000620 - embryo development trait
 PO:0007633 - endosperm development stage
PO:0009009 - plant embryo
PO:0020056 - tegmen
Os08g0137100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g04270.1
LOC_Os08g04270.2
LOC_Os08g04270.3
WFP OsSPL14
SPL14
IPA1
WFP/IPA1
OsSPL14/WFP/IPA1
OsIPA1
IPA1/OsSPL14
 WEALTHY FARMER'S PANICLE IDEAL PLANT ARCHITECTURE 1
Ideal Plant Architecture 1
Ideal Plant Architecture1
Squamosa promoter-binding-like protein 14
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14
Squamosa promoter binding protein like-14
IDEAL PLANT ARCHITECTURE1
 8 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Character as QTL - Germination
Character as QTL - Yield and productivity
Vegetative organ - Root
Character as QTL - Grain quality
Reproductive organ - Panicle, Mode of branching
Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Endosperm
Vegetative organ - Leaf
Seed
 GO:0048623 - seed germination on parent plant
GO:0009960 - endosperm development
GO:0010187 - negative regulation of seed germination
GO:0010081 - regulation of inflorescence meristem growth
GO:0010432 - bract development
GO:0010162 - seed dormancy
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0060359 - response to ammonium ion
GO:0045487 - gibberellin catabolic process
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0042742 - defense response to bacterium
GO:0009607 - response to biotic stimulus
GO:0009409 - response to cold
GO:0009626 - plant-type hypersensitive response
GO:0010050 - vegetative phase change
GO:0048506 - regulation of timing of meristematic phase transition
GO:0009651 - response to salt stress
GO:0048366 - leaf development
GO:0009755 - hormone-mediated signaling
GO:0009736 - cytokinin mediated signaling
GO:0005982 - starch metabolic process
GO:0005634 - nucleus
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0045449 - regulation of transcription
GO:0009740 - gibberellic acid mediated signaling
GO:0050832 - defense response to fungus
GO:0010229 - inflorescence development
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0010231 - maintenance of seed dormancy
GO:0048316 - seed development
 TO:0000329 - tillering ability
TO:0000107 - endosperm storage protein-1 content
TO:0000346 - tiller number
TO:0000456 - spikelet number
TO:0000017 - anatomy and morphology related trait
TO:0002675 - gibberellic acid content
TO:0000396 - grain yield
TO:0000175 - bacterial blight disease resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000109 - endosperm storage protein-2 content
TO:0000586 - seminal root length
TO:0000487 - endosperm color
TO:0000104 - floury endosperm
TO:0000222 - head rice
TO:0000303 - cold tolerance
TO:0000547 - primary branch number
TO:0000447 - filled grain number
TO:0002653 - endosperm storage protein content
TO:0000696 - starch content
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0000340 - total soluble sugar content
TO:0006001 - salt tolerance
TO:0002637 - leaf size
TO:0000656 - root development trait
TO:0000227 - root length
TO:0000253 - seed dormancy
TO:0000179 - biotic stress trait
TO:0000619 - vivipary
TO:0000135 - leaf length
TO:0000357 - growth and development trait
TO:0000455 - seed set percent
TO:0000152 - panicle number
TO:0000011 - nitrogen sensitivity
TO:0002759 - grain number
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
TO:0000074 - blast disease
TO:0002689 - leaf sheath length
TO:0002685 - crown root number
TO:0000050 - inflorescence branching
 PO:0007520 - root development stage
PO:0001083 - inflorescence development stage
PO:0025034 - leaf
PO:0025487 - bract primordium
PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
Os08g0509600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g39890.1
ENL1 enl1
 ENDOSPERMLESS 1 endospermless1
endospermless 1
endospermless-1
SNF2 family helicase ENL1
 4 Seed - Morphological traits - Endosperm
 GO:0000280 - nuclear division
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0007059 - chromosome segregation
GO:0007067 - mitosis
GO:0009960 - endosperm development
GO:0009653 - anatomical structure morphogenesis
GO:0009790 - embryonic development
 TO:0000231 - endospermless
TO:0000064 - embryo related trait
TO:0000587 - endosperm quality
TO:0000113 - giant embryo
 PO:0009009 - plant embryo
PO:0007633 - endosperm development stage
PO:0009089 - endosperm
Os04g0692750 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g59624.1
LOC_Os04g59624.2
LOC_Os04g59624.3
image Id ( 6702 )
ENL1 enl1*
 ENDOSPERMLESS 1 endospermless1
 Seed - Morphological traits - Endosperm
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 -
GLU7 Glu7*(GluB2)
Glu7
GluB2
GLUB2
GLUB-2
GluB-2
GluB-7
GLUB7
 GLUTELIN 7 Rice glutelin7
Rice glutelin-7
Glutelin type-B 2 precursor
Glutelin type-B 2
Glutelin type-B 7
Glutelin type-B 2 acidic chain
Glutelin type-B 2 basic chain
 2 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0045735 - nutrient reservoir activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
 TO:0000490 - protein composition related trait
 PO:0009010 - seed
Os02g0249600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15150.1
LOC_Os02g15150.2
RE1 re1
 REDUCED EMBRYO 1 reduced embryo-1
REDUCED EMBRYO1
 Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
 GO:0009887 - organ morphogenesis
GO:0009960 - endosperm development
GO:0009888 - tissue development
 TO:0000587 - endosperm quality
TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
 PO:0009089 - endosperm
PO:0009009 - plant embryo
- image Id ( 6708 )
RE2 re2
 REDUCED EMBRYO 2 reduced embryo2
reduced embryo 2
reduced embryo-2
 10 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Embryo
 GO:0009960 - endosperm development
GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
TO:0000587 - endosperm quality
 PO:0009089 - endosperm
PO:0009009 - plant embryo
- image Id ( 6708 )
RE3 re3
 REDUCED EMBRYO 3 reduced embryo3
reduced embryo 3
reduced embryo-3
 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Embryo
 GO:0009960 - endosperm development
GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000587 - endosperm quality
TO:0000575 - endosperm related trait
TO:0000064 - embryo related trait
 PO:0009089 - endosperm
PO:0009009 - plant embryo
- image Id ( 6708 )
SHR1 shr1
sh1
shr
 SHRUNKEN ENDOSPERM 1 shrunken endosperm1
shrunken endosperm 1
shrunken eudosperm-1
shrunken
 1 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0009568 - amyloplast starch grain
 TO:0002655 - starch grain size
TO:0000587 - endosperm quality
TO:0002658 - starch grain synthesis
TO:0000266 - chalky endosperm
TO:0000100 - shrunken endosperm
 PO:0009089 - endosperm
-
SBE3 SBEIII*
SBEIII
Sbe3
RBE3
QEIIa
QEIIA
BEIIb
BEIIB
SBEIIb
OsBEIIb
sbe3
SBE III
OsSBEIIb
SBEIIb
 STARCH BRANCHING ENZYME 3 starch branching enzyme3
starch branching enzyme 3
Starch branching enzyme III
Starch branching enzyme-3
starch branching enzyme IIb
branching enzyme-3
Q-enzyme IIa
starch Branching enzyme isoform Type B
Branching enzyme isoform Type B
BE isoform type B
 2 Character as QTL - Grain quality
Seed - Physiological traits
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
 GO:0009408 - response to heat
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005982 - starch metabolic process
GO:0005976 - polysaccharide metabolic process
GO:0009501 - amyloplast
GO:0009568 - amyloplast starch grain
GO:0019252 - starch biosynthetic process
GO:0003844 - 1,4-alpha-glucan branching enzyme activity
GO:0010021 - amylopectin biosynthetic process
 TO:0000604 - fat and essential oil content
TO:0000696 - starch content
TO:0000097 - amylopectin content
TO:0002656 - starch grain shape
TO:0000291 - carbohydrate content
TO:0000259 - heat tolerance
TO:0000412 - setback viscosity
TO:0000011 - nitrogen sensitivity
TO:0000333 - sugar content
TO:0000374 - breakdown viscosity
TO:0000196 - amylose content
TO:0000409 - peak viscosity
TO:0000489 - carbohydrate composition related trait
TO:0000462 - gelatinization temperature
TO:0002673 - amino acid content
 PO:0007632 - seed maturation stage
PO:0009089 - endosperm
Os02g0528200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g32660.2
LOC_Os02g32660.1
FLO2 flo2
flo3(t)
Osflo2
Osflo3(t)
Osflo-2
flo-2
FLO2-1
FLO2-2
 FLOURY ENDOSPERM 2 floury endosperm2
floury endosperm 2
floury endosperm-2
Floury 2
 4 Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
Character as QTL - Grain quality
 GO:0009960 - endosperm development
GO:0005829 - cytosol
GO:0010581 - regulation of starch biosynthetic process
GO:0005976 - polysaccharide metabolic process
GO:0009085 - lysine biosynthetic process
GO:0009568 - amyloplast starch grain
GO:0009737 - response to abscisic acid stimulus
 TO:0002658 - starch grain synthesis
TO:0000490 - protein composition related trait
TO:0000266 - chalky endosperm
TO:0000615 - abscisic acid sensitivity
TO:0000104 - floury endosperm
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0002661 - seed maturation
TO:0000397 - grain size
TO:0000590 - grain weight
TO:0000382 - 1000-seed weight
TO:0000105 - dull endosperm
TO:0000408 - hot paste viscosity
TO:0000409 - peak viscosity
TO:0002656 - starch grain shape
TO:0000391 - seed size
TO:0000196 - amylose content
TO:0000357 - growth and development trait
TO:0000487 - endosperm color
 PO:0009089 - endosperm
Os04g0645100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g55230.1
SBE1 sbe1
Rbe1. Sbe1
sbe1*(QEI)
RBE1
BEI
SBE I
QEI
OsBEI
BE1
OsSBE1
OsSBEI
SBEI
 STARCH BRANCHING ENZYME 1 starch branching enzyme1 (Q enzyme1)
starch branching enzyme1
Q enzyme1
starch branching enzyme 1
Q-enzyme 1
"1
4-alpha-glucan branching enzyme
chloroplast precursor"
"1
4-alpha-glucan branching enzyme
chloroplast"
"1
4-alpha-glucan-branching enzyme
chloroplastic/amyloplastic"
Q-enzyme 1
starch branching enzyme 1
starch branching enzyme-1
branching enzyme-I
Q-Enzyme I
starch Branching enzyme isoform Type A
Branching enzyme isoform Type A
BE isoform type A
branching enzyme 1
 6 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
 GO:0009408 - response to heat
GO:0051707 - response to other organism
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0009568 - amyloplast starch grain
GO:0043169 - cation binding
GO:0009413 - response to flooding
GO:0019252 - starch biosynthetic process
GO:0005982 - starch metabolic process
GO:0003844 - 1,4-alpha-glucan branching enzyme activity
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005976 - polysaccharide metabolic process
GO:0009501 - amyloplast
 TO:0000590 - grain weight
TO:0000489 - carbohydrate composition related trait
TO:0000097 - amylopectin content
TO:0000259 - heat tolerance
TO:0000333 - sugar content
TO:0000286 - submergence sensitivity
TO:0000196 - amylose content
 PO:0009047 - stem
PO:0020142 - stem internode
PO:0020104 - leaf sheath
PO:0005417 - phloem
PO:0009010 - seed
PO:0005020 - vascular bundle
PO:0009089 - endosperm
PO:0025034 - leaf
Os06g0726400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g51084.8
LOC_Os06g51084.7
LOC_Os06g51084.6
LOC_Os06g51084.5
LOC_Os06g51084.4
LOC_Os06g51084.1
LOC_Os06g51084.2
LOC_Os06g51084.3
ALK alk
SSII-3
OsSSIIa
OsSSII-3
SSIIa
SSS2A
OsSSIIaChr6
SS2a
 ALKALI DEGENERATION alkali degeneration
ALKALI DEGENERATION
"Soluble starch synthase 2-3
chloroplast precursor"
"Soluble starch synthase 2-3
chloroplast"
"Soluble starch synthase 2-3
chloroplastic/amyloplastic"
Soluble starch synthase II-3
Starch synthase IIa
soluble starch synthase IIa
Starch synthase-IIa
Starch synthase IIa
 6 Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Seed - Physiological traits
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
 GO:0009501 - amyloplast
GO:0009413 - response to flooding
GO:0019252 - starch biosynthetic process
GO:0010021 - amylopectin biosynthetic process
GO:0009011 - starch synthase activity
GO:0009536 - plastid
GO:0009507 - chloroplast
 TO:0000379 - cool paste viscosity
TO:0000134 - alkali digestion
TO:0000462 - gelatinization temperature
TO:0000488 - seed composition based quality trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000097 - amylopectin content
TO:0000286 - submergence sensitivity
 PO:0009010 - seed
PO:0009089 - endosperm
Os06g0229800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g12450.1
image Id ( 6773 )
XA13 xa13
Xa13
Os8N3
Os-8N3
8N3
OsSWEET11
SWEET11
OsSWEET11/Xa13
Xa13/Os8N3/SWEET11
Os8N3/Xa13
OsSWEET11/Os8N3
OsSWEET11a
SWEET11a
 XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 13 Xanthomonas oryzae pv. oryzae resistance 13
Xanthomonas campestris pv. oryzae resistance-13
Xanthomonas oryzae pv. oryzae resistance-13
sugar will eventually be exported transporter 11
 8 Biochemical character
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Seed - Morphological traits - Endosperm
Vegetative organ - Leaf
 GO:0009555 - pollen development
GO:0005886 - plasma membrane
GO:0009617 - response to bacterium
GO:0005515 - protein binding
GO:0009658 - chloroplast organization
GO:0009960 - endosperm development
GO:0016021 - integral to membrane
GO:0010431 - seed maturation
GO:0005982 - starch metabolic process
GO:0008515 - sucrose transmembrane transporter activity
GO:0051119 - sugar transmembrane transporter activity
GO:0006952 - defense response
GO:0009915 - phloem loading
GO:0006825 - copper ion transport
GO:0010150 - leaf senescence
GO:0042742 - defense response to bacterium
GO:0009651 - response to salt stress
GO:0002237 - response to molecule of bacterial origin
GO:0034219 - carbohydrate transmembrane transport
GO:0015770 - sucrose transport
GO:0005887 - integral to plasma membrane
 TO:0000696 - starch content
TO:0002661 - seed maturation
TO:0000180 - spikelet fertility
TO:0000371 - yield trait
TO:0000391 - seed size
TO:0000382 - 1000-seed weight
TO:0000421 - pollen fertility
TO:0000326 - leaf color
TO:0000455 - seed set percent
TO:0000540 - leaf area
TO:0006001 - salt tolerance
TO:0000249 - leaf senescence
TO:0000060 - aborted uni-nucleate stage
TO:0000175 - bacterial blight disease resistance
TO:0000575 - endosperm related trait
 PO:0020128 - leaf margin
PO:0009066 - anther
PO:0007632 - seed maturation stage
PO:0001054 - 4 leaf senescence stage
PO:0005360 - aleurone layer
PO:0008006 - nucellar epidermis
PO:0008007 - nucellar projection
PO:0020020 - nucellus
PO:0020137 - leaf apex
Os08g0535200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g42350.1
SUG sug(su)
su
sug1
su1
su-1
 SUGARY ENDOSPERM sugary endosperm
sugary endosperm-1
sugary-1
sugary
 8 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0009568 - amyloplast starch grain
 TO:0000587 - endosperm quality
TO:0002658 - starch grain synthesis
TO:0000196 - amylose content
TO:0000099 - sugary endosperm
 PO:0009089 - endosperm
- image Id ( 6787 )
FLO4 FLO4-4
flo4
flo4-2
flo4-3
ppdk
OsPPDK
PPDK1
CPDK1
PPDKB
OsPPDKB
cyOsPPDKB
OsPBDK
PBDK
osppdkb
PPD
cyPPDK
chPPDKB
chOsPPDKB
 FLOURY ENDOSPERM 4 floury endosperm4
floury endosperm 4
pyruvate orthophospate dikinase
"Pyruvate
phosphate dikinase 1
chloroplastic"
"Pyruvate
orthophosphate dikinase 1"
pyruvate orthophosphate dikinase
pyruvate orthophosphate dikinase B
cytosolic pyruvate orthophosphate dikinase
orthophosphate dikinase
Pyruvate phosphate dikinase
White-Core Rice
 5 Vegetative organ - Leaf
Biochemical character
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Character as QTL - Grain quality
Vegetative organ - Culm
 GO:0009408 - response to heat
GO:0000287 - magnesium ion binding
GO:0010581 - regulation of starch biosynthetic process
GO:0009733 - response to auxin stimulus
GO:0080026 - response to indolebutyric acid stimulus
GO:0006529 - asparagine biosynthetic process
GO:0010150 - leaf senescence
GO:0016310 - phosphorylation
GO:0016772 - transferase activity, transferring phosphorus-containing groups
GO:0019252 - starch biosynthetic process
GO:0050242 - pyruvate, phosphate dikinase activity
GO:0005829 - cytosol
GO:0005524 - ATP binding
GO:0016740 - transferase activity
GO:0008610 - lipid biosynthetic process
GO:0009416 - response to light stimulus
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0016301 - kinase activity
GO:0009651 - response to salt stress
GO:0015979 - photosynthesis
 TO:0000162 - seed quality
TO:0000382 - 1000-seed weight
TO:0000266 - chalky endosperm
TO:0000396 - grain yield
TO:0000346 - tiller number
TO:0000696 - starch content
TO:0000196 - amylose content
TO:0000249 - leaf senescence
TO:0000399 - grain thickness
TO:0000104 - floury endosperm
TO:0002680 - albumin content
TO:0000207 - plant height
TO:0000734 - grain length
TO:0000259 - heat tolerance
TO:0002658 - starch grain synthesis
TO:0000487 - endosperm color
TO:0006001 - salt tolerance
TO:0000490 - protein composition related trait
TO:0000710 - globulin protein content
TO:0000590 - grain weight
TO:0000163 - auxin sensitivity
TO:0000075 - light sensitivity
TO:0002653 - endosperm storage protein content
 PO:0009089 - endosperm
PO:0005360 - aleurone layer
PO:0001054 - 4 leaf senescence stage
PO:0020104 - leaf sheath
PO:0007022 - seed imbibition stage
PO:0009005 - root
PO:0020110 - scutellum
PO:0020039 - leaf lamina
Os05g0405000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g33570.2
LOC_Os05g33570.1
FLO12 alaAT
ALT-1
OsAlaAT1
AlaAT1
ALAAT
OsFLO12
 FLOURY ENDOSPERM 12 alanine aminotransferase
Alanine transaminase 1
alanine-aminotransferase1
FLOURY ENDOSPERM12
 10 Character as QTL - Grain quality
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0001666 - response to hypoxia
GO:0005507 - copper ion binding
GO:0005524 - ATP binding
GO:0005739 - mitochondrion
GO:0008483 - transaminase activity
GO:0009058 - biosynthetic process
GO:0009507 - chloroplast
GO:0019481 - L-alanine catabolic process, by transamination
GO:0009960 - endosperm development
GO:0005829 - cytosol
GO:0010581 - regulation of starch biosynthetic process
GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity
GO:0046686 - response to cadmium ion
GO:0042594 - response to starvation
GO:0030170 - pyridoxal phosphate binding
 TO:0000104 - floury endosperm
TO:0000266 - chalky endosperm
TO:0002658 - starch grain synthesis
TO:0000696 - starch content
TO:0002653 - endosperm storage protein content
TO:0000196 - amylose content
TO:0000396 - grain yield
TO:0002656 - starch grain shape
TO:0000590 - grain weight
TO:0000162 - seed quality
TO:0000011 - nitrogen sensitivity
TO:0001007 - coleoptile length
TO:0000015 - oxygen sensitivity
TO:0000487 - endosperm color
TO:0000382 - 1000-seed weight
 PO:0009089 - endosperm
PO:0009005 - root
PO:0009051 - spikelet
PO:0007633 - endosperm development stage
PO:0004506 - developing seed stage
PO:0007057 - 0 seed germination stage
Os10g0390500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g25130.1
ENL enl
 ENDOSPERMLESS endospermless
 Seed - Morphological traits - Endosperm
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 -
GLUB1 GluB1
GluB1-A
GluB-1a
GluB-1
OsGluB1
GluB-1b
OsGluB-1b
GLUB1B
 GLUTELIN B1 Glutelin type-B 1
Glutelin type-B 1 acidic chain
Glutelin type-B 1 basic chain
 2 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0045735 - nutrient reservoir activity
 PO:0006220 - central endosperm
Os02g0249900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15169.1
ISA2 OsISA2
ISA II
OsISA II
 ISOAMYLASE 2 isoamylase-2
isoamylase 2
 5 Seed - Physiological traits - Storage substances
Biochemical character
Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
 GO:0005983 - starch catabolic process
GO:0019252 - starch biosynthetic process
GO:0009507 - chloroplast
GO:0043033 - isoamylase complex
GO:0010021 - amylopectin biosynthetic process
GO:0043169 - cation binding
GO:0019156 - isoamylase activity
 TO:0000266 - chalky endosperm
TO:0000734 - grain length
 PO:0009089 - endosperm
PO:0025034 - leaf
Os05g0393700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g32710.1
OSK4 osk4
OsK4
OsATG1c
ATG1C
SnRK1B
OsSnRK1B
snrk1b
SnRK1B/OSK24
OSK24
OsK24
OsSNRK1b
OsSnRK1.4
SnRK1.4
OsSnRK1alphaC
SnRK1alphaC
 PROTEIN KINASE 4 protein kinase 4
autophagy 1c
AUTOPHAGY ASSOCIATED GENE 1C
SnRK1B protein kinase
sucrose non-fermenting-1 related protein kinase 1b
 8 Seed - Morphological traits - Endosperm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Reproductive organ - Heading date
Biochemical character
Vegetative organ - Culm
 GO:0009960 - endosperm development
GO:0010508 - positive regulation of autophagy
GO:0048364 - root development
GO:0005524 - ATP binding
GO:0051607 - defense response to virus
GO:0007165 - signal transduction
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0006468 - protein amino acid phosphorylation
GO:0004674 - protein serine/threonine kinase activity
GO:0050688 - regulation of defense response to virus
 TO:0000137 - days to heading
TO:0000148 - viral disease resistance
TO:0000207 - plant height
TO:0000653 - seed development trait
TO:0000227 - root length
 PO:0005052 - plant callus
PO:0007131 - seedling development stage
Os08g0484600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g37800.1
MT2B OsMT2b
MT2b
OsMT-I-2c
MT-I-2c
MT2C
MT2BL
OsMT2C
OsMT2BL
MTE
OsMT2b1
OsMT2b2
MT2b1
MT2b2
MTb
met1
OsMTe
OsMT-I-2c
OsB22EL8
MTe
MT-I-2c
B22EL8
 METALLOTHIONEIN2B METALLOTHIONEIN2b
Metallothionein-like protein 2C
Class I metallothionein-like protein 2C
type 2 metallothionein b1
type 2 metallothionein b2
metallothionein 1
 5 Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Biochemical character
 GO:0009555 - pollen development
GO:0043069 - negative regulation of programmed cell death
GO:0009414 - response to water deprivation
GO:0005829 - cytosol
GO:0046872 - metal ion binding
GO:0006979 - response to oxidative stress
GO:0010310 - regulation of hydrogen peroxide metabolic process
GO:0030104 - water homeostasis
GO:0046686 - response to cadmium ion
GO:0009409 - response to cold
GO:0048571 - long-day photoperiodism
GO:0043067 - regulation of programmed cell death
GO:0048653 - anther development
GO:0009648 - photoperiodism
GO:0060548 - negative regulation of cell death
GO:0045454 - cell redox homeostasis
GO:0042594 - response to starvation
 TO:0000636 - relative shoot dry weight
TO:0000053 - pollen sterility
TO:0000187 - anther color
TO:0000214 - anther shape
TO:0000009 - genic male sterility-photoperiod sensitive
TO:0000218 - pollen abortion type
TO:0000455 - seed set percent
TO:0000421 - pollen fertility
TO:0000229 - photoperiod sensitivity
TO:0000266 - chalky endosperm
TO:0000276 - drought tolerance
TO:0000136 - relative water content
TO:0000605 - hydrogen peroxide content
TO:0000303 - cold tolerance
TO:0002662 - leaf rolling tolerance
TO:0002657 - oxidative stress
 PO:0009049 - inflorescence
PO:0009009 - plant embryo
PO:0009005 - root
PO:0020033 - coleoptile
PO:0009066 - anther
Os05g0111300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g02070.3
LOC_Os05g02070.2
PHS8 ISA1
OsISA1
ISA
OsISA
PHS8/ISA1
OsPHS8
ISA I
OsISA I
ISAI
OsISAI
 PRE-HARVEST SPROUTING 8 isoamylase 1
isoamylase1
sugary-1
pre-harvest sprouting 8
 8 Seed - Physiological traits - Dormancy
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0019156 - isoamylase activity
GO:0009269 - response to desiccation
GO:0009737 - response to abscisic acid stimulus
GO:0010581 - regulation of starch biosynthetic process
GO:0009738 - abscisic acid mediated signaling
GO:0005980 - glycogen catabolic process
GO:0009960 - endosperm development
GO:0019252 - starch biosynthetic process
GO:0010021 - amylopectin biosynthetic process
GO:0010029 - regulation of seed germination
GO:0010231 - maintenance of seed dormancy
GO:0048623 - seed germination on parent plant
GO:0043169 - cation binding
 TO:0000099 - sugary endosperm
TO:0000615 - abscisic acid sensitivity
TO:0000394 - drought related trait
TO:0002658 - starch grain synthesis
TO:0000734 - grain length
TO:0000399 - grain thickness
TO:0000011 - nitrogen sensitivity
 PO:0007633 - endosperm development stage
PO:0007632 - seed maturation stage
Os08g0520900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g40930.1
GLUB4 GluB4
GluB-4
GluB-5
GluB5
GluB-4/5
 GLUTELIN B4 2 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
 GO:0006952 - defense response
GO:0045735 - nutrient reservoir activity
GO:0009279 - cell outer membrane
 TO:0002661 - seed maturation
 PO:0005360 - aleurone layer
PO:0006220 - central endosperm
Os02g0268300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g16830.1
BC12 bc12
gdd
GDD1
BC12/GDD1
OsGDD1
OsBC12/GDD1
OsBC12
LGW
OsLGW
SWB9
OsSWB9
 BRITTLE CULM 12 Gibberellin-deficient dwarf 1
gibberellin-deficient dwarf1
kinesin-4 protein BRITTLE CULM12
kinesin-like protein BRITTLE CULM12
OsKinesin-4
low grain weight
small and white belly 9
 9 Character as QTL - Grain quality
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0005524 - ATP binding
GO:0010581 - regulation of starch biosynthetic process
GO:0005871 - kinesin complex
GO:0005874 - microtubule
GO:0040008 - regulation of growth
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0042127 - regulation of cell proliferation
GO:0005982 - starch metabolic process
GO:0006351 - transcription, DNA-dependent
GO:0007049 - cell cycle
GO:0007018 - microtubule-based movement
GO:0048316 - seed development
GO:0009660 - amyloplast organization
GO:0009740 - gibberellic acid mediated signaling
GO:0009960 - endosperm development
GO:0051510 - regulation of unidimensional cell growth
GO:0003777 - microtubule motor activity
GO:0010373 - negative regulation of gibberellin biosynthetic process
GO:0005737 - cytoplasm
GO:0005856 - cytoskeleton
GO:0009739 - response to gibberellin stimulus
GO:0008017 - microtubule binding
GO:0005985 - sucrose metabolic process
GO:0005634 - nucleus
GO:0008574 - plus-end-directed microtubule motor activity
GO:0043565 - sequence-specific DNA binding
GO:0010215 - cellulose microfibril organization
GO:0009832 - plant-type cell wall biogenesis
GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0010229 - inflorescence development
 TO:0000402 - grain width
TO:0002653 - endosperm storage protein content
TO:0000340 - total soluble sugar content
TO:0002656 - starch grain shape
TO:0002658 - starch grain synthesis
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0000211 - gel consistency
TO:0000408 - hot paste viscosity
TO:0000379 - cool paste viscosity
TO:0000462 - gelatinization temperature
TO:0000409 - peak viscosity
TO:0000412 - setback viscosity
TO:0000575 - endosperm related trait
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000487 - endosperm color
TO:0000266 - chalky endosperm
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
TO:0000207 - plant height
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0000734 - grain length
TO:0000547 - primary branch number
TO:0000137 - days to heading
TO:0000346 - tiller number
TO:0000040 - panicle length
TO:0000399 - grain thickness
TO:0000382 - 1000-seed weight
 PO:0009005 - root
PO:0020142 - stem internode
PO:0009049 - inflorescence
PO:0009047 - stem
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
Os09g0114500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g02650.1
SSG6 OsACS6
ACS6
 SUBSTANDARD STARCH GRAIN6 substandard starch grain 6
ACC SYNTHASE 6
 6 Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Biochemical character
Seed - Morphological traits - Endosperm
 GO:0010581 - regulation of starch biosynthetic process
GO:0033097 - amyloplast membrane
GO:0009658 - chloroplast organization
GO:0009693 - ethylene biosynthetic process
GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity
GO:0009960 - endosperm development
 TO:0000590 - grain weight
TO:0002715 - chloroplast development trait
TO:0000397 - grain size
TO:0000402 - grain width
TO:0002655 - starch grain size
TO:0000266 - chalky endosperm
TO:0002658 - starch grain synthesis
 PO:0009005 - root
PO:0009089 - endosperm
Os06g0130400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g03990.1
SWEET4 OsSWEET4
 SWEET4 sugar will eventually be exported transporter 4
 2 Seed - Physiological traits - Storage substances
Vegetative organ - Root
Biochemical character
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Yield and productivity
Seed - Morphological traits - Endosperm
Character as QTL - Plant growth activity
Tolerance and resistance - Stress tolerance
 GO:0009733 - response to auxin stimulus
GO:0005886 - plasma membrane
GO:0008645 - hexose transport
GO:0051119 - sugar transmembrane transporter activity
GO:0015758 - glucose transport
GO:0009960 - endosperm development
GO:0015757 - galactose transport
GO:0008643 - carbohydrate transport
GO:0010150 - leaf senescence
GO:0015770 - sucrose transport
GO:0010431 - seed maturation
GO:0009646 - response to absence of light
GO:0015755 - fructose transport
GO:0007623 - circadian rhythm
GO:0016021 - integral to membrane
GO:0034219 - carbohydrate transmembrane transport
GO:0009739 - response to gibberellin stimulus
GO:0009749 - response to glucose stimulus
GO:0009416 - response to light stimulus
GO:0005887 - integral to plasma membrane
GO:0048364 - root development
GO:0009735 - response to cytokinin stimulus
 TO:0000075 - light sensitivity
TO:0002685 - crown root number
TO:0000100 - shrunken endosperm
TO:0000249 - leaf senescence
TO:0000328 - sucrose content
TO:0000346 - tiller number
TO:0000227 - root length
TO:0000166 - gibberellic acid sensitivity
TO:0000447 - filled grain number
TO:0002616 - flowering time
TO:0000460 - light intensity sensitivity
TO:0000696 - starch content
TO:0000167 - cytokinin sensitivity
TO:0000333 - sugar content
TO:0006005 - fructose content
TO:0002661 - seed maturation
TO:0000163 - auxin sensitivity
TO:0000300 - glucose content
TO:0000357 - growth and development trait
 PO:0001054 - 4 leaf senescence stage
PO:0007633 - endosperm development stage
PO:0025196 - basal endosperm transfer layer
PO:0007632 - seed maturation stage
PO:0007616 - flowering stage
Os02g0301100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g19820.1
SWEET15 OsSWEET15
SWEET14
 SWEET15 sugar will eventually be exported transporter 15
 2 Tolerance and resistance - Disease resistance
Seed - Morphological traits - Endosperm
Biochemical character
 GO:0009735 - response to cytokinin stimulus
GO:0051119 - sugar transmembrane transporter activity
GO:0005887 - integral to plasma membrane
GO:0042742 - defense response to bacterium
GO:0009739 - response to gibberellin stimulus
GO:0034219 - carbohydrate transmembrane transport
GO:0009733 - response to auxin stimulus
GO:0010431 - seed maturation
GO:0009915 - phloem loading
GO:0009960 - endosperm development
GO:0016021 - integral to membrane
GO:0015757 - galactose transport
GO:0008643 - carbohydrate transport
GO:0010150 - leaf senescence
 TO:0000167 - cytokinin sensitivity
TO:0000249 - leaf senescence
TO:0002661 - seed maturation
TO:0000696 - starch content
TO:0000575 - endosperm related trait
TO:0000175 - bacterial blight disease resistance
TO:0000166 - gibberellic acid sensitivity
TO:0000163 - auxin sensitivity
 PO:0001054 - 4 leaf senescence stage
PO:0007632 - seed maturation stage
PO:0008007 - nucellar projection
PO:0005360 - aleurone layer
PO:0020020 - nucellus
PO:0008006 - nucellar epidermis
Os02g0513100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g30910.1
YUCCA11 OsYUCCA11
OsYUC11
YUC11
 YUCCA-LIKE GENE 11 12 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Biochemical character
Seed - Morphological traits - Grain shape
 GO:0031667 - response to nutrient levels
GO:0048316 - seed development
GO:0010431 - seed maturation
GO:0042594 - response to starvation
GO:0016036 - cellular response to phosphate starvation
GO:0009851 - auxin biosynthetic process
GO:0009960 - endosperm development
 TO:0000653 - seed development trait
TO:0002672 - auxin content
TO:0000491 - fat and essential oil composition related trait
TO:0002661 - seed maturation
TO:0000696 - starch content
TO:0000397 - grain size
TO:0002653 - endosperm storage protein content
TO:0000391 - seed size
TO:0000102 - phosphorus sensitivity
TO:0000490 - protein composition related trait
TO:0000602 - total fat content
TO:0000266 - chalky endosperm
TO:0000488 - seed composition based quality trait
 PO:0009089 - endosperm
PO:0006220 - central endosperm
PO:0005360 - aleurone layer
PO:0001170 - seed development stage
PO:0007632 - seed maturation stage
PO:0009009 - plant embryo
PO:0007633 - endosperm development stage
Os12g0189500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g08780.1
YUCCA12 OsYUCCA12
OsYUC12
YUC12
 YUCCA-LIKE GENE 12 2 Biochemical character
Seed - Morphological traits - Endosperm
 GO:0016491 - oxidoreductase activity
GO:0050661 - NADP or NADPH binding
GO:0009960 - endosperm development
GO:0050660 - FAD binding
GO:0010342 - cellularization of endosperm
GO:0048316 - seed development
 TO:0000653 - seed development trait
 PO:0009009 - plant embryo
PO:0001170 - seed development stage
PO:0007633 - endosperm development stage
PO:0009089 - endosperm
Os02g0272200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g17230.1
BZIP50 OsbZIP60
bZIP50
OsbZIP50
OsbZIP74
bZIP74
OsbZIP50-S
 b-ZIP TRANSCRIPTION FACTOR 50 b-ZIP transcription factor 60
b-ZIP transcription factor 50
b-ZIP transcription factor 74
 6 Tolerance and resistance - Disease resistance
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Endosperm
Other
 GO:0006986 - response to unfolded protein
GO:0009408 - response to heat
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0050832 - defense response to fungus
GO:0005789 - endoplasmic reticulum membrane
GO:0030968 - endoplasmic reticulum unfolded protein response
GO:0005783 - endoplasmic reticulum
GO:0034976 - response to endoplasmic reticulum stress
GO:0043565 - sequence-specific DNA binding
GO:0046983 - protein dimerization activity
 TO:0000074 - blast disease
TO:0000104 - floury endosperm
TO:0000432 - temperature response trait
TO:0000266 - chalky endosperm
TO:0000259 - heat tolerance
TO:0000397 - grain size
 Os06g0622700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g41770.1
PDIL1-1 OsPDIL1;1
PDIL1;1
PDIL 1-1
PDI
OsPDIL1-1
OsTrx28
Trx28
 PROTEIN DISULFIDE ISOMERASE-LIKE 1-1 PROTEIN DISULFIDE ISOMERASE-LIKE 1;1
protein disulfide-isomerase
PDI-like protein 1-1
Protein Disulfide Isomerase Like 1-1
Thioredoxin 28
 11 Biochemical character
Seed - Physiological traits
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
 GO:0009960 - endosperm development
GO:0009651 - response to salt stress
GO:0005788 - endoplasmic reticulum lumen
GO:0046689 - response to mercury ion
GO:0055122 - response to very low light intensity stimulus
GO:0048316 - seed development
GO:0009409 - response to cold
GO:0015035 - protein disulfide oxidoreductase activity
GO:0045454 - cell redox homeostasis
GO:0009408 - response to heat
GO:0010229 - inflorescence development
GO:0034975 - protein folding in endoplasmic reticulum
GO:0009055 - electron carrier activity
GO:0006662 - glycerol ether metabolic process
GO:0003756 - protein disulfide isomerase activity
 TO:0000333 - sugar content
TO:0000653 - seed development trait
TO:0000266 - chalky endosperm
TO:0006001 - salt tolerance
TO:0000621 - inflorescence development trait
TO:0002653 - endosperm storage protein content
TO:0000382 - 1000-seed weight
TO:0000104 - floury endosperm
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
TO:0000460 - light intensity sensitivity
TO:0000598 - protein content
 PO:0009010 - seed
PO:0009005 - root
PO:0009047 - stem
PO:0001170 - seed development stage
PO:0001083 - inflorescence development stage
PO:0025034 - leaf
Os11g0199200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g09280.2
LOC_Os11g09280.1
CYSP13 CysP13
OsCYSP13
CpP13
PG5a
Prol-06
pro13b.11
OsPRO13B.11
PROLM9
OsPROLM9
 CYSTEINE-POOR 13KDA PROLAMIN cysteine-poor 13kDa prolamin
Cys-poor 13-kDa prolamin
Prolamin 9
13 kDa prolamin B.11
 5 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
 GO:0033095 - aleurone grain
GO:0045735 - nutrient reservoir activity
GO:0042735 - protein body
GO:0005783 - endoplasmic reticulum
GO:0005773 - vacuole
 PO:0009089 - endosperm
Os05g0329100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26377.1
LOC_Os05g26386.1
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