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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
YUCCA4 OsYUCCA4
OsYUC4
YUC4
YUCCA6
OsYUCCA6
 YUCCA-LIKE GENE 4 (YUCCA-like gene)
 1 Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Biochemical character
 GO:0051707 - response to other organism
GO:0042594 - response to starvation
GO:0009793 - embryonic development ending in seed dormancy
GO:0009408 - response to heat
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0048653 - anther development
GO:0009901 - anther dehiscence
GO:0051607 - defense response to virus
 TO:0002672 - auxin content
TO:0000657 - spikelet anatomy and morphology trait
TO:0000148 - viral disease resistance
TO:0000259 - heat tolerance
TO:0000620 - embryo development trait
TO:0000615 - abscisic acid sensitivity
TO:0000189 - embryoless
 PO:0001035 - G anther dehiscence stage
PO:0009066 - anther
PO:0007631 - plant embryo stage
PO:0001004 - anther development stage
Os01g0224700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12490.1
YUCCA6 OsYUCCA6
OsYUC6
YUC6
 YUCCA-LIKE GENE 6 (YUCCA-like gene)
 7 Biochemical character
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0010262 - somatic embryogenesis
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0051607 - defense response to virus
GO:0009851 - auxin biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0002672 - auxin content
TO:0002693 - gravity response trait
TO:0000432 - temperature response trait
TO:0000020 - black streak dwarf virus resistance
 PO:0000423 - plant zygote
PO:0020148 - shoot apical meristem
PO:0025275 - procambium
PO:0005020 - vascular bundle
PO:0025127 - primordium
Os07g0437000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g25540.1
YUCCA7 OsYUCCA7
OsYUC7
OsYUC5
YUC5
YUC7
 YUCCA-LIKE GENE 7 (YUCCA-like gene)
 4 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Morphological traits - Embryo
 GO:0046686 - response to cadmium ion
GO:0010262 - somatic embryogenesis
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
 TO:0002693 - gravity response trait
 PO:0000423 - plant zygote
PO:0009005 - root
Os04g0128900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g03980.1
YUCCA9 OsYUCCA9
OsYUC9
YUC9
 YUCCA-LIKE GENE 9 (YUCCA-like gene)
 1 Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Biochemical character
 GO:0048316 - seed development
GO:0010262 - somatic embryogenesis
GO:0009851 - auxin biosynthetic process
GO:0004499 - flavin-containing monooxygenase activity
 TO:0002672 - auxin content
TO:0000653 - seed development trait
TO:0000266 - chalky endosperm
 PO:0009089 - endosperm
PO:0000423 - plant zygote
PO:0009006 - shoot system
PO:0009005 - root
PO:0009009 - plant embryo
PO:0009047 - stem
PO:0001170 - seed development stage
PO:0009049 - inflorescence
Os01g0273800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g16714.1
PT4 OsPT4
PHT1-4
OsPht1;4
PHT1-2
PHT1;4
OsPHT1;4
 PHOSPHATE TRANSPORTER 4 Probable inorganic phosphate transporter 1-4
Plant Phosphate Transporter 1;4
 4 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Physiological traits - Dormancy
Biochemical character
 GO:0001887 - selenium metabolic process
GO:0009609 - response to symbiotic bacterium
GO:0046685 - response to arsenic
GO:0005315 - inorganic phosphate transmembrane transporter activity
GO:0005886 - plasma membrane
GO:0009790 - embryonic development
GO:0006817 - phosphate transport
GO:0009845 - seed germination
GO:0015293 - symporter activity
GO:0009737 - response to abscisic acid stimulus
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0016020 - membrane
GO:0009739 - response to gibberellin stimulus
GO:0016021 - integral to membrane
GO:0046688 - response to copper ion
GO:0042594 - response to starvation
GO:0055085 - transmembrane transport
GO:0016036 - cellular response to phosphate starvation
GO:0010269 - response to selenium ion
 TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000021 - copper sensitivity
TO:0000102 - phosphorus sensitivity
 PO:0007633 - endosperm development stage
PO:0009009 - plant embryo
PO:0007057 - 0 seed germination stage
PO:0020103 - flag leaf
PO:0001170 - seed development stage
PO:0007631 - plant embryo stage
PO:0007632 - seed maturation stage
Os04g0186400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g10750.4
LOC_Os04g10750.1
LOC_Os04g10750.2
LOC_Os04g10750.3
LOX1 OsLOX1
OsLOX5
 LIPOXYGENASE 1 lipoxygenase 1
Probable lipoxygenase 4
lipoxygenase 5
 3 Seed - Morphological traits - Embryo
Biochemical character
Seed - Physiological traits
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
 GO:0009611 - response to wounding
GO:0009266 - response to temperature stimulus
GO:0009793 - embryonic development ending in seed dormancy
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0008652 - cellular amino acid biosynthetic process
GO:0019216 - regulation of lipid metabolic process
GO:0006629 - lipid metabolic process
GO:0005506 - iron ion binding
GO:0016165 - lipoxygenase activity
GO:0031408 - oxylipin biosynthetic process
GO:0055114 - oxidation reduction
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0006979 - response to oxidative stress
 TO:0000196 - amylose content
TO:0006001 - salt tolerance
TO:0005001 - linoleic acid content
TO:0000435 - seed longevity
TO:0002657 - oxidative stress
TO:0000432 - temperature response trait
TO:0000620 - embryo development trait
TO:0000276 - drought tolerance
TO:0000345 - seed viability
TO:0000696 - starch content
TO:0000162 - seed quality
TO:0000211 - gel consistency
 PO:0007631 - plant embryo stage
Os03g0700700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g49380.3
LOC_Os03g49380.2
LOC_Os03g49380.1
CKX1 OsCKX1
 CYTOKININ OXIDASE/DEHYDROGENASE 1 cytokinin oxidase 1
 1 Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
 GO:0042594 - response to starvation
GO:0005615 - extracellular space
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity
GO:0009690 - cytokinin metabolic process
GO:0050660 - FAD binding
GO:0009725 - response to hormone stimulus
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009823 - cytokinin catabolic process
GO:0009793 - embryonic development ending in seed dormancy
GO:0019139 - cytokinin dehydrogenase activity
 TO:0000167 - cytokinin sensitivity
TO:0000011 - nitrogen sensitivity
TO:0002660 - cytokinin content
TO:0000163 - auxin sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000620 - embryo development trait
TO:0000266 - chalky endosperm
 PO:0007631 - plant embryo stage
PO:0009005 - root
Os01g0187600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g09260.1
REG1 RICE EMBRYO GLOBULIN-1 PROTEIN Seed - Morphological traits - Embryo
 GO:0019825 - oxygen binding
GO:0020037 - heme binding
GO:0015671 - oxygen transport
GO:0009790 - embryonic development
 -
REG2 REG-2
 RICE EMBRYO GLOBULIN-2 PROTEIN Seed - Morphological traits - Embryo
Seed - Physiological traits - Storage substances
 GO:0020037 - heme binding
GO:0019825 - oxygen binding
GO:0015671 - oxygen transport
GO:0009790 - embryonic development
 TO:0002653 - endosperm storage protein content
 -
LEC1 OsHAP3E
HAP3E
OsLEC1/OsHAP3E
OsLEC1
LEC1
OsNF-YB7
NF-YB7
NFYB7
L1L
OsLEC1B
LEC1B
 LEAFY COTYLEDON 1 HAP3 subunit E
LEC1-type 3 subunit protein-E
leafy cotyledon 1
NUCLEAR FACTOR-Y subunit B7
NUCLEAR FACTOR-Y subunit NF-YB7
LEC1-LIKE
LEAFY COTYLEDON1-LIKE
HAP3 SUBUNIT E
NF-YB subunit 7
NF-YB family 7
LEAFY COTYLEDON1
 2 Coloration - Chlorophyll
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Sterility
 GO:0009790 - embryonic development
GO:0010109 - regulation of photosynthesis
GO:0048700 - acquisition of desiccation tolerance
GO:0010099 - regulation of photomorphogenesis
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010187 - negative regulation of seed germination
GO:0009269 - response to desiccation
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010431 - seed maturation
GO:0048316 - seed development
GO:0015995 - chlorophyll biosynthetic process
GO:0009734 - auxin mediated signaling pathway
GO:0043565 - sequence-specific DNA binding
GO:0009740 - gibberellic acid mediated signaling
GO:0009733 - response to auxin stimulus
GO:0008284 - positive regulation of cell proliferation
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0009738 - abscisic acid mediated signaling
GO:0015979 - photosynthesis
GO:0009845 - seed germination
 TO:0000430 - germination rate
TO:0000428 - callus induction
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000163 - auxin sensitivity
TO:0000620 - embryo development trait
TO:0000391 - seed size
TO:0002661 - seed maturation
TO:0000276 - drought tolerance
TO:0000485 - sterility related trait
TO:0000064 - embryo related trait
TO:0000495 - chlorophyll content
TO:0000207 - plant height
TO:0000488 - seed composition based quality trait
 PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
PO:0007631 - plant embryo stage
PO:0009010 - seed
PO:0020110 - scutellum
PO:0005421 - parenchyma
PO:0009009 - plant embryo
PO:0005052 - plant callus
PO:0007632 - seed maturation stage
Os02g0725700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g49370.1
LOC_Os02g49370.2
LOX-L2 OsLOX-L2
LOX1.1
LOX L-2
LOX-2
OsLOX2
LOX2
 LIPOXYGENASE L2 Lipoxygenase 2
Lipoxygenase L-2
 3 Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Physiological traits - Longevity
 GO:0009266 - response to temperature stimulus
GO:0010030 - positive regulation of seed germination
GO:0055114 - oxidation reduction
GO:0048364 - root development
GO:0051707 - response to other organism
GO:0050832 - defense response to fungus
GO:0016165 - lipoxygenase activity
GO:0002213 - defense response to insect
GO:0005737 - cytoplasm
GO:0009793 - embryonic development ending in seed dormancy
GO:0009816 - defense response to bacterium, incompatible interaction
GO:0005506 - iron ion binding
GO:0009753 - response to jasmonic acid stimulus
GO:0009611 - response to wounding
GO:0009507 - chloroplast
GO:0009737 - response to abscisic acid stimulus
GO:0031408 - oxylipin biosynthetic process
 TO:0000403 - leaf-folder resistance
TO:0000620 - embryo development trait
TO:0000074 - blast disease
TO:0000435 - seed longevity
TO:0000172 - jasmonic acid sensitivity
TO:0000432 - temperature response trait
 PO:0009005 - root
PO:0007631 - plant embryo stage
PO:0007057 - 0 seed germination stage
PO:0009049 - inflorescence
PO:0009047 - stem
Os03g0738600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g52860.1
EMF1 OsEMF1
 EMBRYONIC FLOWER 1 1 Seed - Morphological traits - Embryo
 GO:0048573 - photoperiodism, flowering
 -
EMF2A OsEMF2a
OsEMF2
EMF2
ZOS4-02
OsZOS4-02
OsPcG3
PcG3
 EMBRYONIC FLOWER 2A EMBRYONIC FLOWER 2
Embryonic Flower2a
zinc-finger protein TFIIIA class of Oryza sativa 4-02
ZPT of Oryza sativa 4-02
Polycomb group protein 3
 4 Seed - Morphological traits
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
 GO:0009960 - endosperm development
GO:0009790 - embryonic development
GO:0031490 - chromatin DNA binding
GO:0009651 - response to salt stress
GO:0010431 - seed maturation
GO:0007275 - multicellular organismal development
GO:0010581 - regulation of starch biosynthetic process
GO:0007349 - cellularization
GO:0009691 - cytokinin biosynthetic process
GO:0006349 - genetic imprinting
GO:0009910 - negative regulation of flower development
GO:0048316 - seed development
GO:0008270 - zinc ion binding
GO:0010342 - cellularization of endosperm
GO:0006325 - chromatin organization
GO:0010600 - regulation of auxin biosynthetic process
GO:0051726 - regulation of cell cycle
GO:0005634 - nucleus
GO:0030154 - cell differentiation
GO:0046872 - metal ion binding
GO:0005622 - intracellular
 TO:0000622 - flower development trait
TO:0006020 - shoot apical meristem development
TO:0006001 - salt tolerance
TO:0000653 - seed development trait
TO:0002660 - cytokinin content
TO:0002661 - seed maturation
TO:0000620 - embryo development trait
TO:0002653 - endosperm storage protein content
TO:0000300 - glucose content
TO:0000137 - days to heading
TO:0006005 - fructose content
TO:0000328 - sucrose content
TO:0002672 - auxin content
TO:0000696 - starch content
TO:0000487 - endosperm color
TO:0000345 - seed viability
 PO:0007631 - plant embryo stage
PO:0025034 - leaf
PO:0007633 - endosperm development stage
PO:0025281 - pollen
PO:0009006 - shoot system
PO:0009005 - root
PO:0009049 - inflorescence
PO:0009089 - endosperm
PO:0001170 - seed development stage
Os04g0162100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g08034.6
LOC_Os04g08034.5
LOC_Os04g08034.1
LOC_Os04g08034.2
LOC_Os04g08034.3
LOC_Os04g08034.4
EMF2B OsEMF2b
EMF2b
GW9
OsGW9
GW9/OsEMF2b
OsPcG4
PcG4
 EMBRYONIC FLOWER 2B EMBRYONIC FLOWER 2b
grain weight 9
Polycomb group protein 4
 9 Seed - Morphological traits - Grain shape
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0001558 - regulation of cell growth
GO:0042127 - regulation of cell proliferation
GO:0046872 - metal ion binding
GO:0005634 - nucleus
GO:0048573 - photoperiodism, flowering
GO:0010187 - negative regulation of seed germination
GO:0005622 - intracellular
GO:0031519 - PcG protein complex
GO:0005677 - chromatin silencing complex
GO:0048497 - maintenance of floral organ identity
GO:0031490 - chromatin DNA binding
GO:0070734 - histone H3-K27 methylation
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0008270 - zinc ion binding
GO:0009908 - flower development
GO:0030154 - cell differentiation
GO:0031507 - heterochromatin formation
GO:0010336 - gibberellic acid homeostasis
GO:0009740 - gibberellic acid mediated signaling
GO:0009651 - response to salt stress
 TO:0000137 - days to heading
TO:0006001 - salt tolerance
TO:0000411 - seed length to width ratio
TO:0000145 - internode length
TO:0006019 - floral organ identity
TO:0000447 - filled grain number
TO:0000382 - 1000-seed weight
TO:0000339 - stem thickness
TO:0000430 - germination rate
TO:0002675 - gibberellic acid content
TO:0000734 - grain length
TO:0000657 - spikelet anatomy and morphology trait
TO:0000346 - tiller number
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0000207 - plant height
TO:0002616 - flowering time
TO:0000557 - secondary branch number
 PO:0009005 - root
PO:0009006 - shoot system
PO:0009047 - stem
PO:0025034 - leaf
PO:0009049 - inflorescence
PO:0020104 - leaf sheath
PO:0025281 - pollen
PO:0007633 - endosperm development stage
PO:0020056 - tegmen
Os09g0306800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g13630.1
FIE2 OsFIE2
FIE
OsWD40-153
WD40-153
OsDWD46
DWD46
OsPcG5
PcG5
 FERTILIZATION-INDEPENDENT ENDOSPERM 2 FERTILIZATION-INDEPENDENT ENDOSPERM2
Fertilization-Independent Endosperm 2
Polycomb protein OsFIE2
DWD motif- containing protein 46
Polycomb group protein 5
 8 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
 GO:0019954 - asexual reproduction
GO:0005634 - nucleus
GO:0009651 - response to salt stress
GO:0051782 - negative regulation of cell division
GO:0009960 - endosperm development
GO:0043078 - polar nucleus
GO:0005737 - cytoplasm
GO:0009409 - response to cold
GO:0040029 - regulation of gene expression, epigenetic
GO:0009793 - embryonic development ending in seed dormancy
GO:0006349 - genetic imprinting
GO:0005886 - plasma membrane
GO:0016571 - histone methylation
GO:0000003 - reproduction
GO:0070734 - histone H3-K27 methylation
GO:0045892 - negative regulation of transcription, DNA-dependent
 TO:0000620 - embryo development trait
TO:0000019 - seedling height
TO:0000357 - growth and development trait
TO:0000484 - seed shape
TO:0000207 - plant height
TO:0006001 - salt tolerance
 PO:0009009 - plant embryo
PO:0020056 - tegmen
PO:0007633 - endosperm development stage
Os08g0137100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g04270.1
LOC_Os08g04270.2
LOC_Os08g04270.3
PPS OsWD40-55
OsCOP1
COP1
YEL
OsYEL
OsPPS
COP1-1
OsCOP1-1
OsRING347
RING347
 PETER PAN SYNDROME COP1 ortholog
CONSTITUTIVE PHOTOMORPHOGENIC 1
yellowish-pericarp embryo lethal
RING-type E3 ubiquitin ligase 347
 2 Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Embryo
Coloration - Others
Heterochrony
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
 GO:0010218 - response to far red light
GO:0046283 - anthocyanin metabolic process
GO:0005634 - nucleus
GO:0010119 - regulation of stomatal movement
GO:0008270 - zinc ion binding
GO:0016874 - ligase activity
GO:0009416 - response to light stimulus
GO:0009628 - response to abiotic stimulus
GO:0010228 - vegetative to reproductive phase transition
GO:0046685 - response to arsenic
GO:0009640 - photomorphogenesis
GO:0009641 - shade avoidance
GO:0048573 - photoperiodism, flowering
GO:0009637 - response to blue light
GO:0010224 - response to UV-B
GO:0006281 - DNA repair
GO:0009793 - embryonic development ending in seed dormancy
GO:0009266 - response to temperature stimulus
GO:0009962 - regulation of flavonoid biosynthetic process
 TO:0000229 - photoperiod sensitivity
TO:0000064 - embryo related trait
TO:0000601 - UV-B light sensitivity
TO:0000326 - leaf color
TO:0000675 - ferulic acid content
TO:0006006 - monosaccharide content
TO:0000397 - grain size
TO:0006007 - polysaccharide content
TO:0000137 - days to heading
TO:0000707 - pericarp color
TO:0000051 - stem strength
TO:0000430 - germination rate
TO:0000159 - blue light sensitivity
TO:0000168 - abiotic stress trait
TO:0000590 - grain weight
TO:0000075 - light sensitivity
TO:0000432 - temperature response trait
TO:0000396 - grain yield
TO:0002616 - flowering time
TO:0000130 - far red light sensitivity
TO:0000290 - flavonoid content
 Os02g0771100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g53140.1
AGR1 agr1*
agr1
 AGRAVITROPISM 1 agravitropism1
agravitropism 1
agravitropism-1
 Seed - Morphological traits - Embryo
 GO:0009653 - anatomical structure morphogenesis
GO:0007275 - multicellular organismal development
GO:0009630 - gravitropism
GO:0009790 - embryonic development
 TO:0000419 - leaf anatomy and morphology trait
TO:0000043 - root anatomy and morphology trait
TO:0000064 - embryo related trait
 PO:0009025 - vascular leaf
PO:0009005 - root
PO:0009009 - plant embryo
-
APD1 apd1
apd1*
 APICAL DISPLACEMENT 1 apical displacement1
apical displacement 1
apical displacement-1
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
 TO:0000492 - leaf shape
TO:0000370 - leaf width
TO:0000040 - panicle length
TO:0000576 - stem length
TO:0000064 - embryo related trait
 PO:0009025 - vascular leaf
PO:0009009 - plant embryo
PO:0009047 - stem
PO:0009049 - inflorescence
-
CLE1 cle*
cle1
 CLUB-SHAPED EMBRYO 1 club-shaped embryo1
club-shaped embryo 1
club-shaped embryo-1
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
EML1 eml1
 EMBRYOLESS 1 embryoless1
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009266 - response to temperature stimulus
GO:0009653 - anatomical structure morphogenesis
 - image Id ( 6701 )
EML1 eml1*
eml1
 EMBRYOLESS 1 embryoless1
embryoless 1
embryoless-1
 Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000432 - temperature response trait
TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
GLE1 gle1*. gle1
 GLOBULAR EMBRYO 1 globular embryo1
globular embryo 1
globular embryo-1
 Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
GLE2 gle2*
gle2
 GLOBULAR EMBRYO 2 globular embryo2
globular embryo 2
globular embryo-2
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
GLE3 gle3*
gle3
 GLOBULAR EMBRYO 3 globular embryo3
globular embryo 3
globular embryo-3
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
ORL1 orl1
 ORGANLESS 1 organless1
organless 1
organless embryo-1
 Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
- image Id ( 6705 )
RE1 re1
 REDUCED EMBRYO 1 reduced embryo-1
REDUCED EMBRYO1
 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0009960 - endosperm development
GO:0009888 - tissue development
 TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
TO:0000587 - endosperm quality
 PO:0009089 - endosperm
PO:0009009 - plant embryo
- image Id ( 6708 )
RE2 re2
 REDUCED EMBRYO 2 reduced embryo2
reduced embryo 2
reduced embryo-2
 10 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Embryo
 GO:0009960 - endosperm development
GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000064 - embryo related trait
TO:0000587 - endosperm quality
TO:0000575 - endosperm related trait
 PO:0009009 - plant embryo
PO:0009089 - endosperm
- image Id ( 6708 )
RE3 re3
 REDUCED EMBRYO 3 reduced embryo3
reduced embryo 3
reduced embryo-3
 Seed - Morphological traits - Endosperm
Seed - Morphological traits - Embryo
 GO:0009960 - endosperm development
GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000587 - endosperm quality
TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
 PO:0009009 - plant embryo
PO:0009089 - endosperm
- image Id ( 6708 )
SPO1 spo1*
shp1
spt1
 SHOOT POSITION 1 shoot position1
shoot position 1
shoot position-1
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0020144 - apical meristem
PO:0009009 - plant embryo
PO:0020031 - radicle
-
VEP1 vep1*
vep1
 VARIABLE EMBRYO PHENOTYPES 1 variable embryo phenotypes1
variable embryo phenotypes 1
variable embryo phenotypes-1
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
VEP2 vep2*
vep2
 VARIABLE EMBRYO PHENOTYPES 2 variable embryo phenotypes2
variable embryo phenotypes 2
variable embryo phenotypes-2
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
VEP3 vep3*
vep3
 VARIABLE EMBRYO PHENOTYPES 3 variable embryo phenotypes3
variable embryo phenotypes 3
variable embryo phenotypes-3
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 TO:0000064 - embryo related trait
 PO:0020031 - radicle
PO:0009009 - plant embryo
-
SHO1 sho1
DCL4
OsDCL4
Os DCL4
Dcl4
 SHOOT ORGANIZATION 1 shoot organization 1
shoot organization-1
shoot organization1
Endoribonuclease Dicer homolog 4
Dicer-like protein 4
Protein SHOOT ORGANIZATION 1
Oryza sativa dicer-like4
Oryza sativa dicer-like 4
Dicer like 4
 4 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Vegetative organ - Shoot apical meristem(SAM)
Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0005634 - nucleus
GO:0009408 - response to heat
GO:0042742 - defense response to bacterium
GO:0050832 - defense response to fungus
GO:0048608 - reproductive structure development
GO:0004252 - serine-type endopeptidase activity
GO:0007275 - multicellular organismal development
GO:0009888 - tissue development
GO:0010267 - production of ta-siRNAs involved in RNA interference
GO:0009944 - polarity specification of adaxial/abaxial axis
GO:0010492 - maintenance of shoot apical meristem identity
GO:0030145 - manganese ion binding
GO:0008026 - ATP-dependent helicase activity
GO:0000287 - magnesium ion binding
GO:0003725 - double-stranded RNA binding
GO:0004525 - ribonuclease III activity
GO:0005524 - ATP binding
 TO:0000175 - bacterial blight disease resistance
TO:0000064 - embryo related trait
TO:0000492 - leaf shape
TO:0000074 - blast disease
TO:0000605 - hydrogen peroxide content
TO:0000259 - heat tolerance
 PO:0009009 - plant embryo
PO:0009025 - vascular leaf
PO:0025034 - leaf
Os04g0509300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g43050.4
LOC_Os04g43050.1
image Id ( 6752 )
GE1 ge1
ge
CYP78A13
OsCYP78A13
GE
OsGE
BG2
OsBG2
GES
OsGES
OsGE/CYP78B5
CYP78B5
OsCYP78B5
 GIANT EMBRYO 1 giant embryo1
giant embryo 1
giant embryo
big grain2
Cytochrome P450 78A13
GIANT EMBRYO
super-giant embryo
 7 Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Seed - Morphological traits - Embryo
Biochemical character
Character as QTL - Yield and productivity
 GO:0005783 - endoplasmic reticulum
GO:0080113 - regulation of seed growth
GO:0020037 - heme binding
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019216 - regulation of lipid metabolic process
GO:0043467 - regulation of generation of precursor metabolites and energy
GO:0004497 - monooxygenase activity
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0009960 - endosperm development
GO:0009653 - anatomical structure morphogenesis
GO:0009790 - embryonic development
GO:0010229 - inflorescence development
 TO:0000397 - grain size
TO:0000396 - grain yield
TO:0000193 - embryo shape
TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
TO:0000113 - giant embryo
TO:0000621 - inflorescence development trait
TO:0000391 - seed size
 PO:0009089 - endosperm
PO:0006000 - caryopsis hull
PO:0009009 - plant embryo
PO:0001083 - inflorescence development stage
Os07g0603700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g41240.1
SHL1 shl1
sh1
 SHOOTLESS 1 shootless 1
shootless-1
 12 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
PO:0020144 - apical meristem
- image Id ( 6806 )
SHL2 shl2
SHL2
sh2
OsRDR6
RDR6
DEL
OsDEL
 SHOOTLESS 2 shootless 2
shootless-2
Probable RNA-dependent RNA polymerase SHL2
Protein SHOOTLESS 2
SHOOTLESS2
RNA-dependent RNA polymerase 6
rod-like lemma
DEGENERATED LEMMA
 1 Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility - Sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Spikelet, flower, glume, awn
 GO:0042742 - defense response to bacterium
GO:0009408 - response to heat
GO:0010093 - specification of floral organ identity
GO:0010229 - inflorescence development
GO:0051607 - defense response to virus
GO:0006950 - response to stress
GO:0009266 - response to temperature stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0030422 - production of siRNA involved in RNA interference
GO:0031047 - gene silencing by RNA
GO:0003723 - RNA binding
GO:0003968 - RNA-directed RNA polymerase activity
GO:0005739 - mitochondrion
GO:0009888 - tissue development
GO:0016246 - RNA interference
GO:0009887 - organ morphogenesis
GO:0042138 - meiotic DNA double-strand break formation
GO:0006306 - DNA methylation
GO:0010492 - maintenance of shoot apical meristem identity
 TO:0000274 - floret anatomy and morphology trait
TO:0000557 - secondary branch number
TO:0000455 - seed set percent
TO:0000622 - flower development trait
TO:0000402 - grain width
TO:0000734 - grain length
TO:0002718 - awn anatomy and morphology trait
TO:0000614 - lemma shape
TO:0000259 - heat tolerance
TO:0000975 - grain width
TO:0000605 - hydrogen peroxide content
TO:0000175 - bacterial blight disease resistance
TO:0000567 - tiller angle
TO:0000040 - panicle length
TO:0000148 - viral disease resistance
TO:0000657 - spikelet anatomy and morphology trait
TO:0002759 - grain number
TO:0000615 - abscisic acid sensitivity
TO:0000396 - grain yield
TO:0000485 - sterility related trait
TO:0000592 - 1000-dehulled grain weight
TO:0000064 - embryo related trait
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000164 - stress trait
TO:0000432 - temperature response trait
TO:0000382 - 1000-seed weight
TO:0002730 - grain shape
 PO:0020144 - apical meristem
PO:0009051 - spikelet
PO:0009082 - spikelet floret
PO:0001083 - inflorescence development stage
PO:0009009 - plant embryo
Os01g0527600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g34350.1
image Id ( 6807 )
SHL3 shl3
sh3
 SHOOTLESS 3 shootless 3
shootless-3
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0020144 - apical meristem
PO:0009009 - plant embryo
PO:0020031 - radicle
- image Id ( 6808 )
SHL4 shl4
sh4
OsAGO7
SHO2
AGO7
SHL4/SHO2
OsSHL4
OsSHO2
TFS1
OsTFS1
 SHOOTLESS 4 shootless 4
shootless-4
Protein argonaute 7
Protein SHOOTLESS 4
Protein SHOOT ORGANIZATION 2
SHOOT ORGANIZATION2
ARGONAUTE 7
Argonaute 7
thermo-sensitive female sterility 1
 3 Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0070922 - small RNA loading onto RISC
GO:0009888 - tissue development
GO:0009408 - response to heat
GO:0009887 - organ morphogenesis
GO:0030422 - production of siRNA involved in RNA interference
GO:0003676 - nucleic acid binding
GO:0009266 - response to temperature stimulus
GO:0010492 - maintenance of shoot apical meristem identity
GO:0016246 - RNA interference
 TO:0000432 - temperature response trait
TO:0000455 - seed set percent
TO:0000064 - embryo related trait
TO:0000358 - female sterility
TO:0002681 - leaf curling
TO:0000259 - heat tolerance
TO:0000206 - leaf angle
 PO:0009009 - plant embryo
PO:0020144 - apical meristem
Os03g0449200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g33650.1
image Id ( 6809 )
EML2 eml2*
eml2
 EMBRYOLESS 2 embryoless2
embryoless 2
embryoless-2
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
GO:0009266 - response to temperature stimulus
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
GLB1 glb1(t)*
glb1(t)
glb1
alpha-Glb
Glb-1
OsGlb1
Glb1
Glb
OsEnS-77
 LACK OF ALPHA-GLOBULIN lack of alpha-globulin
alpha-globulin
26 kDa globulin
19 kDa globulin
19kD globulin
endosperm-specific gene 77
Globulin23
 5 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Embryo
 GO:0045735 - nutrient reservoir activity
 TO:0002661 - seed maturation
TO:0000490 - protein composition related trait
 PO:0009010 - seed
Os05g0499100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41970.1
GLE4 gle4*
gle4
 GLOBULAR EMBRYO 4 globular embryo4
globular embryo 4
globular embryo-4
 Seed - Morphological traits - Embryo
 GO:0009888 - tissue development
GO:0009887 - organ morphogenesis
 TO:0000064 - embryo related trait
 PO:0009009 - plant embryo
-
MR1 mr1*
mr1
 MULTIPLE RADICLE 1 multiple radicle-1
 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
 TO:0000250 - vigor related trait
TO:0000019 - seedling height
 PO:0009006 - shoot system
PO:0000003 - whole plant
-
DBS1 dbs1
 DWARFBAMBOO SHOOT 1 dwarf bamboo shoot 1
 1 Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
 -
GRX grx
OsGRX
OsGRX14
OsGrx9
OsGrxC2;2
GrxC2;2
OsGrxC2.2
GrxC2.2
 GLUTAREDOXIN glutaredoxin
glutaredoxin 14
CPYC-type Glutaredoxin 2.2
 4 Seed - Morphological traits - Embryo
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0006810 - transport
GO:0009055 - electron carrier activity
GO:0009736 - cytokinin mediated signaling
GO:0033398 - zeatin biosynthetic process
GO:0006040 - amino sugar metabolic process
GO:0009793 - embryonic development ending in seed dormancy
GO:0008794 - arsenate reductase (glutaredoxin) activity
GO:0016209 - antioxidant activity
GO:0006979 - response to oxidative stress
GO:0015035 - protein disulfide oxidoreductase activity
GO:0045995 - regulation of embryonic development
GO:0006547 - histidine metabolic process
GO:0022900 - electron transport chain
GO:0043651 - linoleic acid metabolic process
GO:0045454 - cell redox homeostasis
GO:0005737 - cytoplasm
 TO:0000605 - hydrogen peroxide content
TO:0000620 - embryo development trait
TO:0000064 - embryo related trait
TO:0002657 - oxidative stress
TO:0000189 - embryoless
TO:0000181 - seed weight
TO:0002660 - cytokinin content
 PO:0025034 - leaf
PO:0009009 - plant embryo
PO:0020033 - coleoptile
PO:0009010 - seed
PO:0007631 - plant embryo stage
PO:0004506 - developing seed stage
PO:0005360 - aleurone layer
PO:0020103 - flag leaf
Os04g0508300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g42930.2
LOC_Os04g42930.1
CUC3 OsCUC3
ONAC107
NAC107
DLN214
OsDLN214
 CUP-SHAPED COTYLEDON 3 cup-shaped cotyledon 3
NAC domain-containing protein 107
CUP-SHAPED COTYLEDON3
DLN repressor 214
DLN motif protein 214
 8 Vegetative organ - Leaf
Seed - Morphological traits - Embryo
Reproductive organ - Spikelet, flower, glume, awn
 GO:0048508 - embryonic meristem development
GO:0009790 - embryonic development
GO:0045449 - regulation of transcription
GO:0003677 - DNA binding
GO:0010492 - maintenance of shoot apical meristem identity
GO:0010199 - organ boundary specification between lateral organs and the meristem
GO:0009791 - post-embryonic development
GO:0048366 - leaf development
 TO:0006020 - shoot apical meristem development
TO:0000655 - leaf development trait
TO:0000225 - stamen number
 PO:0009005 - root
PO:0009009 - plant embryo
PO:0025034 - leaf
PO:0001050 - leaf development stage
PO:0025395 - floral organ
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0020103 - flag leaf
PO:0009055 - bract
PO:0020104 - leaf sheath
PO:0020142 - stem internode
Os08g0511200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g40030.1
DEES1 WAK91
OsWAK91
OsDEES1
 DEFECT IN EARLY EMBRYO SAC1 WALL-ASSOCIATED KINASE GENE 91
 9 Tolerance and resistance - Disease resistance
Biochemical character
Seed - Morphological traits - Embryo
 GO:0010200 - response to chitin
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0030247 - polysaccharide binding
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0050832 - defense response to fungus
GO:0005524 - ATP binding
 TO:0000074 - blast disease
 Os09g0561600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g38850.1
LEA3-1 OsLEA3-1
OsLea3-1
LEA3
OsLEA3
OsLEA19
OsLEA19a
LEA19
OsLEA19b
OsLEA3
Oslea3
oslea3
OsLEA3A
LEA3A
 LATE EMBRYOGENESIS ABUNDANT 3-1 Late embryogenesis abundant protein 3
late embryogenesis abundant protein 19
Group 3 LEA (type I) protein
 5 Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0006970 - response to osmotic stress
GO:0009753 - response to jasmonic acid stimulus
GO:0009735 - response to cytokinin stimulus
GO:0006995 - cellular response to nitrogen starvation
GO:0031667 - response to nutrient levels
GO:0042594 - response to starvation
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009738 - abscisic acid mediated signaling
GO:0009411 - response to UV
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0009408 - response to heat
 TO:0000401 - plant growth hormone sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000011 - nitrogen sensitivity
TO:0000507 - osmotic adjustment capacity
TO:0000276 - drought tolerance
TO:0000095 - osmotic response sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000160 - UV light sensitivity
TO:0000259 - heat tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
 Os05g0542500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g46480.2
LOC_Os05g46480.1
LOC_Os05g46480.3
LOC_Os05g46480.4
TPP2 OsTPP2
 TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2 trehalose-6-phosphate phosphatase 2
 10 Seed - Morphological traits - Embryo
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0010269 - response to selenium ion
GO:0009793 - embryonic development ending in seed dormancy
GO:0009505 - plant-type cell wall
GO:0000271 - polysaccharide biosynthetic process
GO:0046686 - response to cadmium ion
GO:0004805 - trehalose-phosphatase activity
GO:0009409 - response to cold
GO:0005992 - trehalose biosynthetic process
 TO:0000303 - cold tolerance
TO:0000620 - embryo development trait
TO:0000032 - selenium sensitivity
 PO:0007631 - plant embryo stage
Os10g0553300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g40550.1
LOC_Os10g40550.2
LOC_Os10g40555.1
NCED1 OSNCED1
OsNCED-1
OsNCED3
OsNced3
NCED3
OsNCED9
NCED9
 9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 9-cis-epoxycarotenoid dioxygenase 1
9-Cis-Epoxycarotenoid Dioxygenase 3
 3 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Seed - Morphological traits - Embryo
Seed - Physiological traits - Dormancy
Character as QTL - Grain quality
Character as QTL - Germination
Character as QTL - Plant growth activity
Vegetative organ - Root
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0006970 - response to osmotic stress
GO:0042742 - defense response to bacterium
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0010119 - regulation of stomatal movement
GO:0009737 - response to abscisic acid stimulus
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0001666 - response to hypoxia
GO:0010150 - leaf senescence
GO:0009738 - abscisic acid mediated signaling
GO:0009688 - abscisic acid biosynthetic process
GO:0010446 - response to alkalinity
GO:0009753 - response to jasmonic acid stimulus
GO:0009414 - response to water deprivation
GO:0030104 - water homeostasis
GO:0009651 - response to salt stress
GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity
GO:0080050 - regulation of seed development
GO:0080141 - regulation of jasmonic acid biosynthetic process
GO:0009408 - response to heat
GO:0010231 - maintenance of seed dormancy
GO:0048623 - seed germination on parent plant
GO:0009413 - response to flooding
GO:0010029 - regulation of seed germination
GO:0048364 - root development
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0002237 - response to molecule of bacterial origin
GO:0009409 - response to cold
GO:0010162 - seed dormancy
GO:0002213 - defense response to insect
GO:0009793 - embryonic development ending in seed dormancy
GO:0006979 - response to oxidative stress
GO:0009609 - response to symbiotic bacterium
GO:0009507 - chloroplast
GO:0009845 - seed germination
 TO:0000590 - grain weight
TO:0000653 - seed development trait
TO:0000015 - oxygen sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0002667 - abscisic acid content
TO:0000619 - vivipary
TO:0000578 - root fresh weight
TO:0000605 - hydrogen peroxide content
TO:0001016 - relative chlorophyll content
TO:0006002 - proline content
TO:0000397 - grain size
TO:0000481 - alkali sensitivity
TO:0000266 - chalky endosperm
TO:0002673 - amino acid content
TO:0000114 - flooding related trait
TO:0000633 - relative total dry weight
TO:0000340 - total soluble sugar content
TO:0000696 - starch content
TO:0000259 - heat tolerance
TO:0000095 - osmotic response sensitivity
TO:0000253 - seed dormancy
TO:0000276 - drought tolerance
TO:0000333 - sugar content
TO:0000078 - root dry weight
TO:0000172 - jasmonic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000608 - sodium content
TO:0000620 - embryo development trait
TO:0002675 - gibberellic acid content
TO:0000522 - stomatal conductance
TO:0000249 - leaf senescence
TO:0000227 - root length
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0002668 - jasmonic acid content
TO:0000424 - brown planthopper resistance
TO:0000357 - growth and development trait
TO:0002657 - oxidative stress
TO:0000525 - sodium to potassium content ratio
TO:0000609 - potassium content
TO:0000031 - silicon sensitivity
TO:0000290 - flavonoid content
 PO:0009009 - plant embryo
PO:0009006 - shoot system
PO:0007057 - 0 seed germination stage
PO:0001054 - 4 leaf senescence stage
PO:0008037 - seedling
PO:0001170 - seed development stage
PO:0009010 - seed
Os03g0645900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g44380.1
GLK1 OsGLK1
OsGlk1
GLK1
 GOLDEN2-LIKE1 light-related transcription factor OsGLK1
Golden2-like 1
G2-like 1
OsGOLDEN-LIKE1
GOLDEN-LIKE1
 6 Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Seed - Morphological traits - Embryo
 GO:0048658 - tapetal layer development
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0006351 - transcription, DNA-dependent
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0010638 - positive regulation of organelle organization
GO:0010109 - regulation of photosynthesis
GO:0009772 - photosynthetic electron transport in photosystem II
GO:0005737 - cytoplasm
GO:0009767 - photosynthetic electron transport chain
GO:0009658 - chloroplast organization
GO:0009416 - response to light stimulus
GO:0009773 - photosynthetic electron transport in photosystem I
GO:0003677 - DNA binding
GO:0009765 - photosynthesis, light harvesting
GO:0003682 - chromatin binding
GO:0015995 - chlorophyll biosynthetic process
GO:0043067 - regulation of programmed cell death
GO:0009640 - photomorphogenesis
GO:0005634 - nucleus
 TO:0000495 - chlorophyll content
TO:0000421 - pollen fertility
TO:0000075 - light sensitivity
TO:0000064 - embryo related trait
TO:0002715 - chloroplast development trait
 Os06g0348800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g24070.1
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