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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
NYC1 nyc1
OsNYC1
 NON-YELLOW COLORING 1 Chlorophyl b degrading enzyme
Chlase
Non-Yellow Coloring 1
non-yellow coloring1
Probable chlorophyll(ide) b reductase NYC1
chloroplastic
Protein NON-YELLOW COLORING 1
short-chain dehydrogenase/reductase NYC1
 1 Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0005488 - binding
GO:0009535 - chloroplast thylakoid membrane
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0010150 - leaf senescence
GO:0016021 - integral to membrane
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0009536 - plastid
GO:0016491 - oxidoreductase activity
GO:0042170 - plastid membrane
 TO:0002712 - stay green trait
TO:0000249 - leaf senescence
TO:0000599 - enzyme activity
TO:0000495 - chlorophyll content
 PO:0009037 - lemma
PO:0001054 - 4 leaf senescence stage
PO:0020104 - leaf sheath
PO:0020122 - inflorescence axis
PO:0009025 - vascular leaf
PO:0009038 - palea
Os01g0227100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12710.2
LOC_Os01g12710.1
YGL1 OsYGL1
CHLG
Ygl1
CS
OsCHLG
 YELLOW-GREEN LEAF 1 chlorina
Chl synthetase
Chlorophyll synthase
yellow green leaf 1
 5 Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0051707 - response to other organism
GO:0006098 - pentose-phosphate shunt
GO:0006364 - rRNA processing
GO:0009073 - aromatic amino acid family biosynthetic process
GO:0009965 - leaf morphogenesis
GO:0010027 - thylakoid membrane organization
GO:0009534 - chloroplast thylakoid
GO:0015994 - chlorophyll metabolic process
GO:0042793 - transcription from plastid promoter
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0016021 - integral to membrane
GO:0016117 - carotenoid biosynthetic process
GO:0019344 - cysteine biosynthetic process
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0030154 - cell differentiation
GO:0046408 - chlorophyll synthetase activity
GO:0051607 - defense response to virus
GO:0046686 - response to cadmium ion
GO:0009902 - chloroplast relocation
GO:0015995 - chlorophyll biosynthetic process
GO:0031969 - chloroplast membrane
GO:0009416 - response to light stimulus
 TO:0000075 - light sensitivity
TO:0000148 - viral disease resistance
TO:0000020 - black streak dwarf virus resistance
 Os05g0349700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g28200.2
LOC_Os05g28200.1
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Coloration - Chlorophyll
Other
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
Seed - Morphological traits
Vegetative organ - Culm
 GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009739 - response to gibberellin stimulus
GO:0009957 - epidermal cell fate specification
GO:0051510 - regulation of unidimensional cell growth
GO:0080006 - internode patterning
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0012501 - programmed cell death
GO:0042127 - regulation of cell proliferation
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0048437 - floral organ development
GO:0001558 - regulation of cell growth
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0048316 - seed development
 TO:0000085 - leaf rolling
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000587 - endosperm quality
TO:0000474 - glume opening
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0001006 - adventitious root number
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0002681 - leaf curling
TO:0001012 - lateral root length
TO:0000019 - seedling height
TO:0000657 - spikelet anatomy and morphology trait
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000598 - protein content
TO:0000196 - amylose content
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000382 - 1000-seed weight
TO:0000326 - leaf color
TO:0001027 - net photosynthetic rate
TO:0000135 - leaf length
TO:0000295 - chlorophyll-b content
TO:0002757 - flag leaf length
TO:0000370 - leaf width
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000053 - pollen sterility
TO:0000391 - seed size
TO:0000655 - leaf development trait
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0025426 - phloem development stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020141 - stem node
PO:0001004 - anther development stage
PO:0025585 - floral organ formation stage
PO:0007520 - root development stage
PO:0020142 - stem internode
PO:0000293 - guard cell
PO:0006019 - leaf abaxial epidermis
PO:0001050 - leaf development stage
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
AGO2 OsAGO2
 ARGONAUTE 2 sativa Argonaute 2
Protein argonaute 2
ARGONAUTE2
 4 Tolerance and resistance - Stress tolerance
Other
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
 GO:0009409 - response to cold
GO:0009658 - chloroplast organization
GO:0003676 - nucleic acid binding
GO:0043067 - regulation of programmed cell death
GO:0051607 - defense response to virus
GO:0031047 - gene silencing by RNA
GO:0046466 - membrane lipid catabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0009690 - cytokinin metabolic process
GO:0048316 - seed development
GO:0009651 - response to salt stress
GO:0050687 - negative regulation of defense response to virus
GO:0006306 - DNA methylation
GO:0010150 - leaf senescence
 TO:0000734 - grain length
TO:0000455 - seed set percent
TO:0000615 - abscisic acid sensitivity
TO:0002660 - cytokinin content
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0002715 - chloroplast development trait
TO:0000495 - chlorophyll content
TO:0000020 - black streak dwarf virus resistance
TO:0000326 - leaf color
TO:0001015 - photosynthetic rate
TO:0000269 - 100-seed weight
TO:0000605 - hydrogen peroxide content
TO:0000449 - grain yield per plant
TO:0000396 - grain yield
TO:0000316 - photosynthetic ability
TO:0000303 - cold tolerance
 Os04g0615700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g52540.1
HB4 OSHB4
OsHox32
HOX32
OsHB4
Oshox32
PHB3
OsHDZ13
OsHDZIP13
HDZ13
HDZIP13
 HOMEODOMAIN CONTAINING PROTEIN 4 Homeobox-leucine zipper protein HOX32
Homeodomain transcription factor HOX32
HD-ZIP protein HOX32
rice homeobox gene 32
homeodomain-leucine zipper transcription factor 13
OsHDZIP transcription factor 13
 3 Other
Vegetative organ - Culm
Coloration - Chlorophyll
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0005634 - nucleus
GO:0005886 - plasma membrane
GO:0009416 - response to light stimulus
GO:0048366 - leaf development
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0046686 - response to cadmium ion
GO:0009733 - response to auxin stimulus
GO:0009414 - response to water deprivation
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0042546 - cell wall biogenesis
 TO:0000276 - drought tolerance
TO:0000370 - leaf width
TO:0000163 - auxin sensitivity
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000655 - leaf development trait
TO:0000051 - stem strength
TO:0001017 - water use efficiency
TO:0000085 - leaf rolling
TO:0000172 - jasmonic acid sensitivity
TO:0001015 - photosynthetic rate
TO:0000206 - leaf angle
TO:0000495 - chlorophyll content
TO:0000075 - light sensitivity
 PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009005 - root
PO:0009089 - endosperm
PO:0001050 - leaf development stage
Os03g0640800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g43930.2
LOC_Os03g43930.1
HAP2J OsHAP2J
NF-YA
CBF-B
NF-YA5
OsNF-YA5
NFYA5
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A5
NUCLEAR FACTOR-Y subunit NF-YA5
NF-YA transcription factor 5
NF-YA subunit 5
NF-YA family 5
NUCLEAR FACTOR-YA5
 7 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Other
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0005634 - nucleus
GO:0010150 - leaf senescence
GO:0045848 - positive regulation of nitrogen utilization
GO:0042594 - response to starvation
GO:0051607 - defense response to virus
GO:0016602 - CCAAT-binding factor complex
GO:0006995 - cellular response to nitrogen starvation
GO:0043565 - sequence-specific DNA binding
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000011 - nitrogen sensitivity
TO:0002673 - amino acid content
TO:0002759 - grain number
TO:0000153 - relative yield
TO:0000249 - leaf senescence
TO:0000590 - grain weight
TO:0001034 - relative plant height
TO:0000181 - seed weight
TO:0001016 - relative chlorophyll content
TO:0000148 - viral disease resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000495 - chlorophyll content
 PO:0009047 - stem
PO:0009005 - root
Os07g0158500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g06470.2
LOC_Os07g06470.1
LEC1 OsHAP3E
HAP3E
OsLEC1/OsHAP3E
OsLEC1
LEC1
OsNF-YB7
NF-YB7
NFYB7
L1L
OsLEC1B
LEC1B
 LEAFY COTYLEDON 1 HAP3 subunit E
LEC1-type 3 subunit protein-E
leafy cotyledon 1
NUCLEAR FACTOR-Y subunit B7
NUCLEAR FACTOR-Y subunit NF-YB7
LEC1-LIKE
LEAFY COTYLEDON1-LIKE
HAP3 SUBUNIT E
NF-YB subunit 7
NF-YB family 7
LEAFY COTYLEDON1
 2 Coloration - Chlorophyll
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Sterility
 GO:0009790 - embryonic development
GO:0010109 - regulation of photosynthesis
GO:0048700 - acquisition of desiccation tolerance
GO:0010099 - regulation of photomorphogenesis
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010187 - negative regulation of seed germination
GO:0009269 - response to desiccation
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010431 - seed maturation
GO:0048316 - seed development
GO:0015995 - chlorophyll biosynthetic process
GO:0009734 - auxin mediated signaling pathway
GO:0043565 - sequence-specific DNA binding
GO:0009740 - gibberellic acid mediated signaling
GO:0009733 - response to auxin stimulus
GO:0008284 - positive regulation of cell proliferation
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0009738 - abscisic acid mediated signaling
GO:0015979 - photosynthesis
GO:0009845 - seed germination
 TO:0000430 - germination rate
TO:0000428 - callus induction
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000163 - auxin sensitivity
TO:0000620 - embryo development trait
TO:0000391 - seed size
TO:0002661 - seed maturation
TO:0000276 - drought tolerance
TO:0000485 - sterility related trait
TO:0000064 - embryo related trait
TO:0000495 - chlorophyll content
TO:0000207 - plant height
TO:0000488 - seed composition based quality trait
 PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
PO:0007631 - plant embryo stage
PO:0009010 - seed
PO:0020110 - scutellum
PO:0005421 - parenchyma
PO:0009009 - plant embryo
PO:0005052 - plant callus
PO:0007632 - seed maturation stage
Os02g0725700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g49370.1
LOC_Os02g49370.2
NYC3 nyc3
OsNYC3
PPH
 NON-YELLOW COLORING 3 pheophytinase
 6 Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0016787 - hydrolase activity
GO:0010941 - regulation of cell death
GO:0050832 - defense response to fungus
GO:0015996 - chlorophyll catabolic process
GO:0080124 - pheophytinase activity
GO:0010150 - leaf senescence
GO:0009536 - plastid
GO:0009645 - response to low light intensity stimulus
 TO:0000447 - filled grain number
TO:0000326 - leaf color
TO:0000249 - leaf senescence
TO:0000074 - blast disease
TO:0000590 - grain weight
TO:0000340 - total soluble sugar content
TO:0000291 - carbohydrate content
TO:0000696 - starch content
TO:0000333 - sugar content
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000255 - sheath blight disease resistance
TO:0000207 - plant height
TO:0000605 - hydrogen peroxide content
TO:0000495 - chlorophyll content
TO:0000460 - light intensity sensitivity
 PO:0001054 - 4 leaf senescence stage
Os06g0354700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g24730.3
LOC_Os06g24730.2
LOC_Os06g24730.1
NOL nol
NOL1
OsNOL
OsNOL1
 NYC1-LIKE Non-Yellow Coloring 1 like
NYC1-like
"Chlorophyll(ide) b reductase NOL
chloroplastic"
Protein NON-YELLOW COLORING 1-LIKE
Protein NYC1-LIKE
Short-chain dehydrogenase/reductase NOL
 3 Biochemical character
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0005488 - binding
GO:0016491 - oxidoreductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0009535 - chloroplast thylakoid membrane
GO:0009536 - plastid
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0008152 - metabolic process
 TO:0000326 - leaf color
TO:0000495 - chlorophyll content
 Os03g0654600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g45194.1
BT1-3 OsBT1-3
SLA
 BRITTLE 1-3 Brittle-1-3
seedling leaf albino
 6 Coloration - Chlorophyll
Biochemical character
Vegetative organ - Leaf
 GO:0016021 - integral to membrane
GO:0022857 - transmembrane transporter activity
GO:0005743 - mitochondrial inner membrane
GO:0009507 - chloroplast
GO:0015292 - uniporter activity
GO:0022891 - substrate-specific transmembrane transporter activity
GO:0009941 - chloroplast envelope
GO:0015853 - adenine transport
GO:0009658 - chloroplast organization
GO:0006839 - mitochondrial transport
GO:0005982 - starch metabolic process
 TO:0000326 - leaf color
TO:0002715 - chloroplast development trait
 Os06g0602700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40050.1
LOC_Os06g40050.2
LPS1 SDH2
SDHB
sdhB
RPS14
rps14
sdh2-1
SDH2-RPS14
OsLPS1
OsSDH2-1
 LATE PREMATURE SENESCENCE 1 SUCCINATE:UBIQUINONE OXIDOREDUCTASE
mitochondrial succinate dehydrogenase subunit B
ribosomal protein S14
succinate dehydrogenase (iron-sulphur protein subunit)
chimeric SDH2-RPS14
 8 Reproductive organ - Pollination, fertilization, fertility
Coloration - Chlorophyll
Coloration - Others
Character as QTL - Yield and productivity
Biochemical character
Reproductive organ - panicle
Vegetative organ - Culm
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0006099 - tricarboxylic acid cycle
GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0007005 - mitochondrion organization
GO:0009658 - chloroplast organization
GO:0009055 - electron carrier activity
GO:0000104 - succinate dehydrogenase activity
GO:0016491 - oxidoreductase activity
GO:0010150 - leaf senescence
GO:0005739 - mitochondrion
GO:0010229 - inflorescence development
 TO:0000293 - chlorophyll-a content
TO:0001015 - photosynthetic rate
TO:0000316 - photosynthetic ability
TO:0000040 - panicle length
TO:0000522 - stomatal conductance
TO:0000447 - filled grain number
TO:0002715 - chloroplast development trait
TO:0000639 - seed fertility
TO:0000621 - inflorescence development trait
TO:0000249 - leaf senescence
TO:0000396 - grain yield
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000605 - hydrogen peroxide content
TO:0000455 - seed set percent
TO:0006032 - panicle size
TO:0000496 - carotenoid content
TO:0000295 - chlorophyll-b content
 PO:0001083 - inflorescence development stage
PO:0000025 - root tip
PO:0025034 - leaf
PO:0001054 - 4 leaf senescence stage
PO:0009066 - anther
PO:0009072 - plant ovary
Os08g0120000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g02640.1
LOC_Os08g02640.2
LOC_Os08g02640.3
LOC_Os08g02640.4
LOC_Os08g02640.5
YL1 MTC
OsMTC
YGL8
OsYGL8
OsCRD1
CRD1
OsCRD
CRD
YL-1
PNZIP
OsPNZIP
 YELLOW-LEAF 1 Mg-Proto IX monomethylester cyclase
yellow-green leaf 8
Copper Response Defect 1
Yellow-Leaf 1
PHARBITIS NIL LEUCINE ZIPPER
 1 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0051707 - response to other organism
GO:0050832 - defense response to fungus
GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
GO:0031408 - oxylipin biosynthetic process
GO:0003677 - DNA binding
GO:0009658 - chloroplast organization
GO:0019216 - regulation of lipid metabolic process
GO:0009507 - chloroplast
GO:0005506 - iron ion binding
GO:0015979 - photosynthesis
GO:0009941 - chloroplast envelope
GO:0019344 - cysteine biosynthetic process
GO:0009668 - plastid membrane organization
GO:0009534 - chloroplast thylakoid
GO:0006636 - unsaturated fatty acid biosynthetic process
GO:0010027 - thylakoid membrane organization
GO:0010207 - photosystem II assembly
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0009414 - response to water deprivation
GO:0009416 - response to light stimulus
GO:0006364 - rRNA processing
 TO:0002715 - chloroplast development trait
TO:0000295 - chlorophyll-b content
TO:0000255 - sheath blight disease resistance
TO:0000316 - photosynthetic ability
TO:0000298 - chlorophyll ratio
TO:0000326 - leaf color
TO:0000188 - drought sensitivity
TO:0000293 - chlorophyll-a content
 PO:0009047 - stem
PO:0025034 - leaf
PO:0009049 - inflorescence
Os01g0279100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g17170.1
LOC_Os01g17170.2
AL12 al12
 ALBINO 12 8 Coloration - Chlorophyll
 GO:0015994 - chlorophyll metabolic process
GO:0009658 - chloroplast organization
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 -
CHS2 chs2(t)*
chs2
 CHLOROSIS CAUSED BY LOW TEMPERATURE 2 chlorosis caused by low temperature2
chlorosis caused by low temperature 2
chlorosis caused by low temperature-2
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000432 - temperature response trait
 PO:0009025 - vascular leaf
-
CHS3 chs3(t)*
chs3
 CHLOROSIS CAUSED BY LOW TEMPERATURE 3 chlorosis caused by low temperature3
chlorosis caused by low temperature 3
chlorosis caused by low temperature-3
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000432 - temperature response trait
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
CHS4 chs4(t)*
chs4
 CHLOROSIS CAUSED BY LOW TEMPERATURE 4 chlorosis caused by low temperature4
chlorosis caused by low temperature 4
chlorosis caused by low temperature-4
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000432 - temperature response trait
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
LGP lgp*
lgp
 LIGHT GREEN PANICLE AND LEAF light green panicle and leaf
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000264 - lemma and palea color
 PO:0009049 - inflorescence
PO:0009025 - vascular leaf
-
V(KL1111) v(KL1111)
 VIRESCENT-KL 1111 virescent-(KL1111)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 - image Id ( 6712 )
V(KL406) v(KL406)
 VIRESCENT-KL 406 virescent-(KL406)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 - image Id ( 6713 )
YL yl*
 CHLOROPHYLL MUTANT chlorophyll mutant (unstable gamete)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
 -
YP yp*
gh4
 YELLOW PANICLE yellow panicle
gold hull and internode-4
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009648 - photoperiodism
GO:0003700 - transcription factor activity
 TO:0000137 - days to heading
TO:0000264 - lemma and palea color
TO:0000077 - shoot anatomy and morphology trait
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
-
Z(KL1207) z(KL1207)
 ZEBRA zebra(KL1207)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000069 - variegated leaf
 - image Id ( 6714 )
AL8 al8
alK8
 ALBINO 8 albino8
albino 8
albino-8
 1 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
CHL5 chl5
 CHLORINA 5 chlorina5
chlorina 5
chlorina-5
 1 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000299 - leaf lamina color
TO:0000346 - tiller number
TO:0000496 - carotenoid content
TO:0000495 - chlorophyll content
 PO:0006343 - axillary shoot system
PO:0009025 - vascular leaf
-
Z8 z8
 ZEBRA 8 zebra8
zebra 8
zebra-8
 1 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
-
FS2 fs2
 FINE STRIPE 2 fine stripe2
fine stripe 2
fine stripe-2
 1 Coloration - Chlorophyll
 GO:0015994 - chlorophyll metabolic process
GO:0009658 - chloroplast organization
 TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
- image Id ( 6718 )
CHL6 chl6
 CHLORINA 6 chlorina6
chlorina 6
chlorina-6
 1 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000496 - carotenoid content
 PO:0009025 - vascular leaf
-
AL4 al4
alK4
 ALBINO 4 albino4
albino 4
albino-4
 1 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
-
V6 v6
 VIRESCENT 6 virescent6
virescent 6
virescent-6
 1 Coloration - Chlorophyll
 GO:0009266 - response to temperature stimulus
GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000432 - temperature response trait
TO:0000299 - leaf lamina color
 PO:0009049 - inflorescence
PO:0009025 - vascular leaf
- image Id ( 6723 )
Z11 z11
 ZEBRA 11 zebra11
zebra 11
zebra-11
 2 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000264 - lemma and palea color
TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
 PO:0009049 - inflorescence
PO:0009025 - vascular leaf
-
Z12 z12
 ZEBRA 12 zebra12
zebra 12
zebra-12
 2 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
-
CHL10 chl10
 CHLORINA 10 chlorina10
chlorina 10
chlorina-10
 2 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000496 - carotenoid content
TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
- image Id ( 6729 )
ST3 st3(stl)
stl
st
st3
 STRIPE 3 stripe3
stripe 3
stripe-3
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0007275 - multicellular organismal development
 TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
TO:0000492 - leaf shape
 PO:0009025 - vascular leaf
-
V5 v5
 VIRESCENT 5 virescent5
virescent 5
virescent-5
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000432 - temperature response trait
 PO:0009025 - vascular leaf
- image Id ( 6734 )
V7 v7
 VIRESCENT 7 virescent7
virescent 7
virescent-7
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0000432 - temperature response trait
TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
TO:0000373 - inflorescence anatomy and morphology trait
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
- image Id ( 6735 )
Z9 z9
 ZEBRA 9 zebra9
zebra 9
zebra-9
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
-
Z3 OsZ3
z3
SIET4
OsSIET4
 ZEBRA 3 zebra3
zebra 3
zebra-3
silicon efflux transporter 4
Si efflux transporter 4
 3 Reproductive organ - Heading date
Seed - Morphological traits
Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
Coloration - Others
 GO:0005886 - plasma membrane
GO:0032523 - silicon efflux transmembrane transporter activity
GO:0055085 - transmembrane transport
GO:0016021 - integral to membrane
GO:0048573 - photoperiodism, flowering
GO:0015746 - citrate transport
GO:0015995 - chlorophyll biosynthetic process
GO:0007275 - multicellular organismal development
 TO:0000486 - seed color
TO:0000339 - stem thickness
TO:0000326 - leaf color
TO:0002616 - flowering time
TO:0000069 - variegated leaf
TO:0000495 - chlorophyll content
 PO:0009051 - spikelet
PO:0009047 - stem
PO:0009025 - vascular leaf
PO:0020122 - inflorescence axis
PO:0025034 - leaf
PO:0009053 - peduncle
PO:0006016 - leaf epidermis
PO:0009005 - root
PO:0020104 - leaf sheath
PO:0005004 - shoot node
PO:0006000 - caryopsis hull
PO:0006325 - inflorescence node
Os03g0147400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g05390.11
LOC_Os03g05390.10
LOC_Os03g05390.9
LOC_Os03g05390.5
LOC_Os03g05390.6
LOC_Os03g05390.7
LOC_Os03g05390.8
LOC_Os03g05390.12
LOC_Os03g05390.13
LOC_Os03g05390.1
LOC_Os03g05390.2
LOC_Os03g05390.3
LOC_Os03g05390.4
ST6 st6(t)
st6
 STRIPE 6 stripe6
stripe 6
stripe-6
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
TO:0000264 - lemma and palea color
 PO:0009025 - vascular leaf
PO:0020104 - leaf sheath
PO:0009037 - lemma
PO:0009038 - palea
-
AL10 al10
 ALBINO 10 albino10
albino 10
albino-10
 3 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
CHL2 chl2
 CHLORINA 2 chlorina2
chlorina 2
chlorina-2
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
TO:0000496 - carotenoid content
 PO:0009025 - vascular leaf
- image Id ( 6742 )
CHL3 chl3
 CHLORINA 3 chlorina3
chlorina 3
chlorina-3
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000496 - carotenoid content
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
CHL1 chl1
chl1(ch1)
ch1
 CHLORINA 1 chlorina1
chlorina 1
chlorina-1
 3 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0016117 - carotenoid biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000496 - carotenoid content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
- image Id ( 6747 )
AL5 al5
alK5
 ALBINO 5 albino5
albino 5
albino-5
 4 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
AL7 al7(t)
alK7
al7
 ALBINO 7 albino7
albino 7
albino-7
 4 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
 PO:0009025 - vascular leaf
-
NAL1 nal1
cul1
GPS
SPIKE
SPIKE/LSCHL4/NAL1/GPS
SPIKE/NAL1
LSCHL4
OsNAL1
 NARROW LEAF 1 narrow leaf1
narrow leaf 1
narrow leaf-1
curl leaf-1
Green for photosysthesis
SPIKELET NUMBER
 4 Coloration - Chlorophyll
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Reproductive organ - panicle
Vegetative organ - Culm
Vegetative organ - Leaf
 GO:0030163 - protein catabolic process
GO:0003824 - catalytic activity
GO:0008152 - metabolic process
GO:0009651 - response to salt stress
GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000329 - tillering ability
TO:0006032 - panicle size
TO:0000456 - spikelet number
TO:0000370 - leaf width
TO:0000447 - filled grain number
TO:0000492 - leaf shape
TO:0000262 - panicle shape
TO:0000152 - panicle number
TO:0000396 - grain yield
TO:0000346 - tiller number
TO:0000495 - chlorophyll content
TO:0006001 - salt tolerance
 PO:0020103 - flag leaf
PO:0009025 - vascular leaf
Os04g0615000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g52479.1
LOC_Os04g52479.2
LOC_Os04g52479.3
image Id ( 6749 )
ST7 st7
 STRIPE 7 stripe7
stripe 7
stripe-7
 4 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
 PO:0009025 - vascular leaf
-
YLM ylm
 YELLOW LEAF MARGIN yellow leaf margin
 4 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
Z5 z5
 ZEBRA 5 zebra5
zebra 5
zebra-5
 4 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000264 - lemma and palea color
TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
 PO:0009025 - vascular leaf
PO:0009082 - spikelet floret
-
ST4 st4(ws2)
ws2
st4
 STRIPE 4 stripe4
stripe 4
stripe-4
 4 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000373 - inflorescence anatomy and morphology trait
TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
 PO:0009049 - inflorescence
PO:0009025 - vascular leaf
- image Id ( 6756 )
ST5 st5
 STRIPE 5 stripe5
stripe 5
stripe-5
 4 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0007275 - multicellular organismal development
 TO:0000495 - chlorophyll content
TO:0000069 - variegated leaf
TO:0000264 - lemma and palea color
 PO:0009038 - palea
PO:0009037 - lemma
PO:0009025 - vascular leaf
-
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/rice/oryzabase