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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
ANS ANS
OsANS1
ANS1
LDOX
LDOX1
OsLDOX
OsLDOX1
 ANTHOCYANIDIN SYNTHASE anthocyanidin synthase
leucoanthocyanidin dioxygenase
 1 Biochemical character
Coloration - Others
Seed - Morphological traits
Seed
Tolerance and resistance - Stress tolerance
Coloration - Anthocyanin
 GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0010023 - proanthocyanidin biosynthetic process
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0050589 - leucocyanidin oxygenase activity
GO:0048316 - seed development
GO:0009753 - response to jasmonic acid stimulus
GO:0009409 - response to cold
GO:0009735 - response to cytokinin stimulus
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0009718 - anthocyanin biosynthetic process
GO:0005506 - iron ion binding
GO:0009408 - response to heat
GO:0007033 - vacuole organization
GO:0009611 - response to wounding
 TO:0000653 - seed development trait
TO:0000168 - abiotic stress trait
TO:0000075 - light sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
TO:0000071 - anthocyanin content
TO:0000290 - flavonoid content
TO:0000707 - pericarp color
 PO:0009066 - anther
PO:0007010 - whole plant fruit ripening stage
PO:0001170 - seed development stage
Os01g0372500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g27490.1
F3'H OsF3'H
OsCYP75B3
CYP75B3
OsF3'H10
F3'H10
OsCYP71P3
CYP71P3
 FLAVONOID 3'-HYDROXYLASE sativa flavonoid 3'-hydroxylase
Flavanone 3'-hydroxylase
P-450 75B3
Cytochrome P450 75B3
flavonoid 3'-monooxygenase
flavonoid 3'-hydroxylase 10
 10 Seed
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Seed - Morphological traits
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0002213 - defense response to insect
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0009718 - anthocyanin biosynthetic process
GO:0005634 - nucleus
GO:0016020 - membrane
GO:0009408 - response to heat
GO:0009813 - flavonoid biosynthetic process
GO:0045486 - naringenin 3-dioxygenase activity
GO:0048316 - seed development
GO:0009753 - response to jasmonic acid stimulus
GO:0050832 - defense response to fungus
GO:0020037 - heme binding
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016021 - integral to membrane
 TO:0000653 - seed development trait
TO:0000259 - heat tolerance
TO:0000071 - anthocyanin content
TO:0000074 - blast disease
TO:0000172 - jasmonic acid sensitivity
TO:0000424 - brown planthopper resistance
 PO:0001170 - seed development stage
Os10g0320100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g17260.1
IPL3 IPl3
 INHIBITOR FOR PURPLE LEAF 3 Inhibitor for purple leaf3
Inhibitor for purple leaf 3
Inhibitor for purple leaf-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
TO:0000299 - leaf lamina color
TO:0000426 - internode color
TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
PO:0020104 - leaf sheath
PO:0005005 - shoot internode
-
IPL5 IPl5
 INHIBITOR FOR PURPLE PERICARP 5 Inhibitor for purple pericarp-5
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000190 - seed coat color
TO:0000487 - endosperm color
 PO:0009010 - seed
-
IPL6 IPl6
 INHIBITOR FOR PURPLE LEAF 6 Inhibitor for purple leaf (Pl-i)
Inhibitor for purple leaf (Pl.2(Pl-i))
Inhibitor for purple leaf-6
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
TO:0000326 - leaf color
 PO:0009025 - vascular leaf
-
IPS1 IPs1*
IPs1
 INHIBITOR FOR PURPLE STIGMA 1 Inhibitor for purple stigma (Ps1)
Inhibitor for purple stigma-1
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
IPS3 IPs3*
IPs2
 INHIBITOR FOR PURPLE STIGMA 3 Inhibitor for purple stigma (Ps3)
Inhibitor for purple stigma-2
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
IPSA IPsa(IPs1)
IPsa
IPs1
Ips3
 INHIBITOR FOR PURPLE STIGMA A Inhibitor for purple stigma-a (Psa)
Inhibitor for purple stigma-a
Inhibitor for purple stigma-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
PC Pc
 PURPLE COLEOPTILE Purple coleoptile
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
 PO:0020104 - leaf sheath
-
PJ Pj
 PURPLE JUNCTURA Purple junctura
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
-
PJB Pjb
 PURPLE JUNCTURA BACK Purple junctura back
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
-
PLA1 pla1
OsPLA1
plt1
CYP78A11
 PLASTOCHRON 1 plastochron1
plastochron 1
plastochron-1
Cytochrome P450 78A11
Protein PLASTOCHRON1
 10 Coloration - Anthocyanin
Vegetative organ - Leaf
Reproductive organ - panicle
Heterochrony
Reproductive organ - Panicle, Mode of branching
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0010228 - vegetative to reproductive phase transition
GO:0010432 - bract development
GO:0051781 - positive regulation of cell division
GO:0055114 - oxidation reduction
GO:0004497 - monooxygenase activity
GO:0007275 - multicellular organismal development
GO:0009055 - electron carrier activity
GO:0010229 - inflorescence development
GO:0020037 - heme binding
GO:0048366 - leaf development
GO:0009740 - gibberellic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
 TO:0000050 - inflorescence branching
TO:0000621 - inflorescence development trait
TO:0000391 - seed size
TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000369 - vegetative growth time
TO:0002638 - shoot meristem development
TO:0000659 - phyllochron
TO:0000730 - mitotic cell cycle trait
TO:0000166 - gibberellic acid sensitivity
 PO:0020148 - shoot apical meristem
PO:0001083 - inflorescence development stage
PO:0020122 - inflorescence axis
Os10g0403000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g26340.1
image Id ( 6707 )
PLG Plg
 PURPLE LIGULE Purple ligule
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000197 - ligule color
 PO:0020105 - ligule
-
PLM Plm(Pla)
Pla
Plm
 PURPLE LEAF MARGIN Purple leaf margin
Purple leaf apex
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
 PO:0020039 - leaf lamina
-
PM Pm(Sp)
Sp
Pm
 PURPLE SEPTUM Purple septum
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
TO:0000426 - internode color
 PO:0005005 - shoot internode
PO:0020141 - stem node
-
PMR Pmr(Plm)
Plm
Pmr
 PURPLE MIDRIB Purple midrib
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
 PO:0020039 - leaf lamina
-
PNR Pnr
 PURPLE NODAL RING Purple nodal ring
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
 PO:0020141 - stem node
-
PS3 Ps3(Ps2)
Ps2
Ps3
 PURPLE STIGMA 3 Purple stigma3
Purple stigma 3
Purple stigma-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
PSH Psh
 PURPLE LEAF SHEATH Purple leaf sheath
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
 PO:0020104 - leaf sheath
-
PU Pu
 PURPLE PULVINUS Purple pulvinus
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
 PO:0020141 - stem node
-
PX Px
 PURPLE LEAF AXIL Purple leaf axil
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
TO:0000059 - node color
 PO:0020039 - leaf lamina
-
ILB Ilb*
Ilb
 INHIBITOR OF LEAF BLADE COLOR Inhibitor of leaf blade color
Inhibitor for purple leaf blade
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
TO:0000299 - leaf lamina color
 PO:0020104 - leaf sheath
-
IPSB IPsb(IPs2)
IPsb
IPs2
Ips4
 INHIBITOR FOR PURPLE STIGMA B Inhibitor for purple stigma-b (Psb)
Inhibitor for purple stigma-b
Inhibitor for purple stigma-4
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
PRPA Prpa(Pp)
Pp
Prpa
Prp1
 PURPLE PERICARP-A Purple pericarp-a
Purple pericarp
Purple pericarp-1
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000190 - seed coat color
 PO:0009088 - seed coat
-
PAU Pau
 PURPLE AURICLE Purple auricle
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000294 - auricle color
TO:0000077 - shoot anatomy and morphology trait
 PO:0020106 - leaf sheath auricle
-
PN Pn
 PURPLE NODE Purple node
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000294 - auricle color
TO:0000299 - leaf lamina color
TO:0000197 - ligule color
TO:0000364 - leaf collar color
TO:0000059 - node color
 PO:0020105 - ligule
PO:0009025 - vascular leaf
PO:0006012 - leaf collar
PO:0020141 - stem node
PO:0020106 - leaf sheath auricle
-
RD Rd
DFR
OsDFR
OS-DFR
OsDFR1
DFR1
DFR-1
 RED PERICARP AND SEED COAT Red pericarp and seed coat
dihydroflavonol 4-reductase
dihydroflavonol-4-reductase
dihydroflavonol 4-reductase 1
 1 Coloration - Anthocyanin
Vegetative organ - Culm
Coloration - Others
Seed - Morphological traits
Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Seed
 GO:0050832 - defense response to fungus
GO:0003824 - catalytic activity
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0051555 - flavonol biosynthetic process
GO:0043473 - pigmentation
GO:0009408 - response to heat
GO:0009718 - anthocyanin biosynthetic process
GO:0048316 - seed development
GO:0050662 - coenzyme binding
GO:0044237 - cellular metabolic process
GO:0002213 - defense response to insect
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0009812 - flavonoid metabolic process
 TO:0000259 - heat tolerance
TO:0000074 - blast disease
TO:0000140 - apiculus color
TO:0000075 - light sensitivity
TO:0000487 - endosperm color
TO:0000706 - hull color
TO:0000071 - anthocyanin content
TO:0000486 - seed color
TO:0000185 - stigma color
TO:0000207 - plant height
TO:0000707 - pericarp color
TO:0000205 - white-backed planthopper resistance
TO:0000653 - seed development trait
TO:0000326 - leaf color
TO:0000190 - seed coat color
 PO:0009089 - endosperm
PO:0009073 - stigma
PO:0001170 - seed development stage
PO:0006033 - paleal apiculus
PO:0007010 - whole plant fruit ripening stage
PO:0009088 - seed coat
Os01g0633500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g44260.1
A A(Sp)
Sp
Ap
 ANTHOCYANIN ACTIVATOR, RED PERICARP AND SEED COAT Anthocyanin activator
ANTHOCYANIN ACTIVATOR
Activator for anthocyanin pigmentation
 1 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000140 - apiculus color
 PO:0006033 - paleal apiculus
-
PIN1 Pin1
 PURPLE INTERNODE 1 Purple internode1
Purple internode 1
Purple internode-1
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000426 - internode color
TO:0000367 - basal leaf sheath color
TO:0000294 - auricle color
TO:0000059 - node color
TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
PO:0020141 - stem node
PO:0020106 - leaf sheath auricle
PO:0020104 - leaf sheath
PO:0020142 - stem internode
-
PL2 pl2(t)
pl2
 PURPLE LEAF 2 purple leaf2
purple leaf 2
purple leaf-2
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000071 - anthocyanin content
TO:0000299 - leaf lamina color
TO:0000264 - lemma and palea color
TO:0000056 - stem color
TO:0000367 - basal leaf sheath color
TO:0000326 - leaf color
 PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009025 - vascular leaf
-
P P(Pa,Pb,Pc)
A
Pa
 COLORED APICULUS Colored apiculus
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000140 - apiculus color
 PO:0006033 - paleal apiculus
-
PS2 Ps2(Ps1)
Ps1
Ps2
 PURPLE STIGMA 2 Purple stigma2
Purple stigma 2
Purple stigma-2
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0006061 - stigma epidermis
-
PR Pr(Rp)
Rp
Pr
 PURPLE HULL Purple hull
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000264 - lemma and palea color
TO:0000190 - seed coat color
 PO:0009038 - palea
PO:0009088 - seed coat
PO:0009037 - lemma
-
PS1 Ps1
 PURPLE STIGMA 1 (GAISENMOCHI) Purple stigma1 (Gaisenmochi)
Purple stigma 1
Purple stigma-1(Gaisenmochi)1
Purple stigma-1
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0006061 - stigma epidermis
-
PRPB Prpb(Pb)
Pb
Prpb
Prp2
 PURPLE PERICARP-B Purple pericarp-b
Purple pericarp-2
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000190 - seed coat color
 PO:0009088 - seed coat
-
PL Pl
Pl1
 PURPLE LEAF Purple leaf
Purple leaf-1
 4 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000294 - auricle color
TO:0000364 - leaf collar color
TO:0000367 - basal leaf sheath color
TO:0000197 - ligule color
TO:0000059 - node color
TO:0000426 - internode color
TO:0000299 - leaf lamina color
 PO:0020105 - ligule
PO:0009025 - vascular leaf
PO:0006012 - leaf collar
PO:0020142 - stem internode
PO:0020141 - stem node
PO:0020106 - leaf sheath auricle
PO:0020104 - leaf sheath
Os04g0557800/Os04g0557500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g47080.1/LOC_Os04g47059.1
IPL1 IPl1
 INHIBITOR FOR PURPLE LEAF 1 Inhibitor for Purple leaf 1
Inhibitor for purple leaf-1
 5 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000364 - leaf collar color
TO:0000299 - leaf lamina color
TO:0000059 - node color
TO:0000426 - internode color
TO:0000294 - auricle color
TO:0000197 - ligule color
 PO:0006012 - leaf collar
PO:0020105 - ligule
PO:0020141 - stem node
PO:0020106 - leaf sheath auricle
PO:0009025 - vascular leaf
PO:0020142 - stem internode
-
IPL2 IPl2
 INHIBITOR FOR PURPLE LEAF 2 Inhibitor for purple leaf2
Inhibitor for purple leaf 2
Inhibitor for purple leaf-2
 6 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000294 - auricle color
TO:0000426 - internode color
TO:0000059 - node color
TO:0000197 - ligule color
TO:0000364 - leaf collar color
TO:0000367 - basal leaf sheath color
TO:0000299 - leaf lamina color
 PO:0020105 - ligule
PO:0020142 - stem internode
PO:0006012 - leaf collar
PO:0020141 - stem node
PO:0009025 - vascular leaf
PO:0020106 - leaf sheath auricle
PO:0020104 - leaf sheath
-
IPL4 IPl4
 INHIBITOR FOR PURPLE PERICARP 4 Inhibitor for purple pericarp-4
 6 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
TO:0000190 - seed coat color
TO:0000487 - endosperm color
 PO:0009088 - seed coat
PO:0009025 - vascular leaf
-
C C
Cp
OsC1
Os-C1
C1
OsMyb6
Myb6
OsPL6
PL6
OsGL1E
GL1E
Os2R_MYB63
2R_MYB63
OsC1PLSr
C1PLSr
MYB2-74
OsMYB2-74
 CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin
Chromogen
Rice C1 anthocyanin regulatory gene
myb transcription factor 6
transcription factor MYB6
Oryza saliva C1
rice homolog of maize C1
Purple Leaf 6. GLABRA1E
GLABRA 1E
R2R3-MYB Transcription Factor 63
R2R3-MYB transcription factor 2-74
 6 Other
Seed - Morphological traits
Reproductive organ - Inflorescence
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Coloration - Anthocyanin
 GO:0031542 - positive regulation of anthocyanin biosynthetic process
GO:0009414 - response to water deprivation
GO:0009962 - regulation of flavonoid biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0009718 - anthocyanin biosynthetic process
GO:0003677 - DNA binding
GO:0031540 - regulation of anthocyanin biosynthetic process
GO:0009658 - chloroplast organization
GO:0006979 - response to oxidative stress
GO:0015994 - chlorophyll metabolic process
GO:0005634 - nucleus
 TO:0000140 - apiculus color
TO:0000190 - seed coat color
TO:0000290 - flavonoid content
TO:0002724 - leaf sheath color
TO:0002657 - oxidative stress
TO:0000426 - internode color
TO:0002660 - cytokinin content
TO:0000258 - leaf thickness
TO:0002715 - chloroplast development trait
TO:0001015 - photosynthetic rate
TO:0000522 - stomatal conductance
TO:0001018 - transpiration rate
TO:0000605 - hydrogen peroxide content
TO:0000141 - awn color
TO:0000264 - lemma and palea color
TO:0000367 - basal leaf sheath color
TO:0002675 - gibberellic acid content
TO:0000340 - total soluble sugar content
TO:0000295 - chlorophyll-b content
TO:0000071 - anthocyanin content
TO:0000276 - drought tolerance
TO:0000293 - chlorophyll-a content
TO:0000495 - chlorophyll content
TO:0000185 - stigma color
TO:0000400 - sterile lemma color
TO:0000364 - leaf collar color
TO:0000326 - leaf color
TO:0000316 - photosynthetic ability
TO:0002667 - abscisic acid content
 PO:0006012 - leaf collar
PO:0006032 - lemma awn
PO:0009006 - shoot system
PO:0007632 - seed maturation stage
PO:0009038 - palea
PO:0009049 - inflorescence
PO:0009073 - stigma
PO:0025349 - awn
PO:0006033 - paleal apiculus
PO:0020104 - leaf sheath
PO:0009037 - lemma
PO:0005005 - shoot internode
PO:0009025 - vascular leaf
PO:0009010 - seed
PO:0025034 - leaf
Os06g0205100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g10350.1
PGI2 Pgi2(Pgib)
Pgib
Pgi_2
Pgi2
GPI-B
PGI-B
PHI-B
Pgi-b
PGI-b
SIS
OsSIS
OsPGI2
 PHOSPHOGLUCOISOMERASE 2 Phosphoglucoisomerase2
Phosphoglucoisomerase 2
Phosphoglucoisomerase-2
Glucose-6-phosphate isomerase
cytosolic B
Phosphoglucose isomerase B
Phosphohexose isomerase B
"glucose-6-phosphate isomerase
cytosolic B"
sugar isomerase
 6 Coloration - Anthocyanin
Biochemical character
 GO:0006096 - glycolysis
GO:0004347 - glucose-6-phosphate isomerase activity
GO:0005829 - cytosol
GO:0006094 - gluconeogenesis
GO:0009813 - flavonoid biosynthetic process
 Os06g0256500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g14510.3
LOC_Os06g14510.2
LOC_Os06g14510.1
RC Rc
OsRC
OsbHLH017
OsbHLH17
SD7-1
qSD7-1/qPC7
OsGL3C
GL3C
 BROWN PERICARP AND SEED COAT Brown pericarp and seed coat
basic/helix-loop-helix 17
basic helix loop helix 17
GLABRA3C
GLABRA 3C
 7 Coloration - Others
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Dormancy
Coloration - Anthocyanin
 GO:0006979 - response to oxidative stress
GO:0009812 - flavonoid metabolic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0046283 - anthocyanin metabolic process
 TO:0000190 - seed coat color
TO:0002657 - oxidative stress
TO:0000707 - pericarp color
TO:0000290 - flavonoid content
TO:0000605 - hydrogen peroxide content
TO:0000487 - endosperm color
 PO:0009089 - endosperm
PO:0009088 - seed coat
Os07g0211500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g11020.1
image Id ( 6780 )
CHS CHS*
Oschs
chs
chas
OsCHS
OsCHS1
CHS1
OsPKS26
PKS26
OsCHS24
CHS24
OsCHS27
CHS27
 CHALCONE SYNTHASE Chalcone synthase
Naregenin-chalcone synthase
chalcone synthase
chalcone synthase 1
polyketide synthase 26
Chalcone synthase 24
 11 Tolerance and resistance - Stress tolerance
Tolerance and resistance
Seed - Morphological traits
Biochemical character
Seed
Coloration - Anthocyanin
Vegetative organ - Leaf
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
 GO:0009651 - response to salt stress
GO:0009753 - response to jasmonic acid stimulus
GO:0030639 - polyketide biosynthetic process
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups
GO:0051553 - flavone biosynthetic process
GO:0009813 - flavonoid biosynthetic process
GO:0008415 - acyltransferase activity
GO:0016210 - naringenin-chalcone synthase activity
GO:0042742 - defense response to bacterium
GO:0009411 - response to UV
GO:0010332 - response to gamma radiation
GO:0010224 - response to UV-B
GO:0051555 - flavonol biosynthetic process
GO:0002213 - defense response to insect
GO:0009718 - anthocyanin biosynthetic process
GO:0009408 - response to heat
GO:0048316 - seed development
GO:0009814 - defense response, incompatible interaction
 TO:0000326 - leaf color
TO:0000071 - anthocyanin content
TO:0000653 - seed development trait
TO:0000175 - bacterial blight disease resistance
TO:0000160 - UV light sensitivity
TO:0000259 - heat tolerance
TO:0000601 - UV-B light sensitivity
TO:0000290 - flavonoid content
TO:0006001 - salt tolerance
TO:0000707 - pericarp color
TO:0000424 - brown planthopper resistance
TO:0000172 - jasmonic acid sensitivity
 PO:0009047 - stem
PO:0009006 - shoot system
PO:0009005 - root
PO:0001170 - seed development stage
PO:0020104 - leaf sheath
Os11g0530600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g32650.1
PRT Prt*
Prt
 PURPLE ROOT Purple root
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000065 - root color
 PO:0009005 - root
-
PS Ra*
bhlh13
OsbHLH013
OsbHLH13
Ra
OSB1
OsB1
B1
Ra1
OsGL3A
GL3A
OsB2
OsMYC7
MYC7
OsPs
Ps
OsHLH1
HLH1
 PURPLE STIGMA Rice R gene (Anthocyanin biosynthesis) : a
basic helix loop helix 13
Rice R gene (Anthocyanin biosynthesis)-a
GLABRA3A
GLABRA 3A
Myelocytomatosis oncogene transcription factor 7
purple stigma
 4 Coloration - Anthocyanin
Seed - Morphological traits
 GO:0005739 - mitochondrion
GO:0009536 - plastid
GO:0046983 - protein dimerization activity
GO:0005634 - nucleus
GO:0009812 - flavonoid metabolic process
GO:0031542 - positive regulation of anthocyanin biosynthetic process
 TO:0000190 - seed coat color
TO:0000185 - stigma color
TO:0000487 - endosperm color
TO:0000071 - anthocyanin content
 PO:0009073 - stigma
PO:0009089 - endosperm
PO:0009088 - seed coat
PO:0007632 - seed maturation stage
PO:0009047 - stem
Os04g0557800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g47080.1
PSH1 Rb
Rb*
bhlh165
OsbHLH165
Rb2
OsPSH1
OsRb2
 PURPLE LEAF SHEATH 1 Rice R gene : b R gene family
Rice R gene-b
basic/helix-loop-helix 165
basic helix loop helix 165
purple leaf sheath 1
 1 Coloration - Anthocyanin
 GO:0010431 - seed maturation
GO:0005634 - nucleus
GO:0009812 - flavonoid metabolic process
GO:0030528 - transcription regulator activity
GO:0005739 - mitochondrion
GO:0045449 - regulation of transcription
 TO:0002724 - leaf sheath color
TO:0000071 - anthocyanin content
TO:0000487 - endosperm color
TO:0002661 - seed maturation
TO:0000190 - seed coat color
 PO:0007632 - seed maturation stage
PO:0009088 - seed coat
PO:0009089 - endosperm
Os01g0577300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g39580.1
PAL1 OsPAL
Pal1*
Pal1
PAL
Pal_1
PalI
PAL2
OsPAL01
PAL01
OSPAL
CP-1
GP-1
OsPAL1
PAL3
OsPAL3
 PHENYLALANINE AMMONIA-LYASE 1 phenylalanine ammonia-lyase
phenylalanine ammonia lyase 1
Phe ammonia lyase 1
 2 Seed
Biochemical character
Vegetative organ - Culm
Vegetative organ - Leaf
Tolerance and resistance - Insect resistance
Coloration - Anthocyanin
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Tolerance and resistance
 GO:0050832 - defense response to fungus
GO:0009699 - phenylpropanoid biosynthetic process
GO:0009807 - lignan biosynthetic process
GO:0009813 - flavonoid biosynthetic process
GO:0009414 - response to water deprivation
GO:0009739 - response to gibberellin stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0016841 - ammonia-lyase activity
GO:0009753 - response to jasmonic acid stimulus
GO:0002237 - response to molecule of bacterial origin
GO:0009642 - response to light intensity
GO:0009635 - response to herbicide
GO:0002213 - defense response to insect
GO:0009814 - defense response, incompatible interaction
GO:0048316 - seed development
GO:0009058 - biosynthetic process
GO:0009698 - phenylpropanoid metabolic process
GO:0009751 - response to salicylic acid stimulus
GO:0042742 - defense response to bacterium
GO:0009809 - lignin biosynthetic process
GO:0046688 - response to copper ion
GO:0010266 - response to vitamin B1
GO:0009834 - secondary cell wall biogenesis
GO:0009718 - anthocyanin biosynthetic process
GO:0006559 - L-phenylalanine catabolic process
GO:0005737 - cytoplasm
GO:0016211 - ammonia ligase activity
GO:0009408 - response to heat
GO:0009411 - response to UV
GO:0009697 - salicylic acid biosynthetic process
 TO:0000074 - blast disease
TO:0000290 - flavonoid content
TO:0000276 - drought tolerance
TO:0000255 - sheath blight disease resistance
TO:0000733 - lignin biosynthesis trait
TO:0000731 - lignin content
TO:0000175 - bacterial blight disease resistance
TO:0000460 - light intensity sensitivity
TO:0000424 - brown planthopper resistance
TO:0000031 - silicon sensitivity
TO:0000071 - anthocyanin content
TO:0000160 - UV light sensitivity
TO:0000021 - copper sensitivity
TO:0000259 - heat tolerance
TO:0000326 - leaf color
TO:0000011 - nitrogen sensitivity
TO:0000051 - stem strength
TO:0000624 - allelopathic effect
TO:0002677 - brassinosteroid sensitivity
TO:0000653 - seed development trait
TO:0000058 - herbicide sensitivity
TO:0000166 - gibberellic acid sensitivity
 PO:0000003 - whole plant
PO:0001170 - seed development stage
Os02g0626100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g41630.2
RA1 Ra1
 RA-LIKE GENE 1 Ra-like gene 1
 4 Coloration - Anthocyanin
 GO:0009718 - anthocyanin biosynthetic process
 -
RB2 Rb2
 RB-LIKE GENE 2 Rb-like gene 2
 Coloration - Anthocyanin
 GO:0045449 - regulation of transcription
GO:0030528 - transcription regulator activity
GO:0005739 - mitochondrion
GO:0009812 - flavonoid metabolic process
GO:0005634 - nucleus
 -
WRKY1 OsWRKY1
OsWRKY1v2
 WRKY GENE1 Rice WRKY gene1
 1 Seed - Morphological traits
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Tolerance and resistance - Disease resistance
 GO:0009845 - seed germination
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009413 - response to flooding
GO:0031542 - positive regulation of anthocyanin biosynthetic process
GO:0005634 - nucleus
GO:0009629 - response to gravity
GO:0009812 - flavonoid metabolic process
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0043565 - sequence-specific DNA binding
GO:0006952 - defense response
GO:0003700 - transcription factor activity
 TO:0002693 - gravity response trait
TO:0000259 - heat tolerance
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000524 - submergence tolerance
TO:0000707 - pericarp color
TO:0000071 - anthocyanin content
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
TO:0000175 - bacterial blight disease resistance
 PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
Os01g0246700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g14440.1
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/rice/oryzabase