Gene - List

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List of Gene

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The top 100 Gene Ontology, Plant Ontology,Trait Ontology and Trait Class are being displayed.

Gene Ontology Plant Ontology Trait Ontology Trait Class

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Search Condition : Filter(traitClassFacetEn:022_Coloration - Anthocyanin)
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CGSNL
Gene
Symbol
Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID Mutant
Image
IPL3 IPl3
INHIBITOR FOR PURPLE LEAF 3 Inhibitor for purple leaf3
Inhibitor for purple leaf 3
Inhibitor for purple leaf-3
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000299 - leaf lamina color
TO:0000426 - internode color
TO:0000367 - basal leaf sheath color
TO:0000364 - leaf collar color
PO:0005005 - shoot internode
PO:0006012 - leaf collar
PO:0020104 - leaf sheath
-
IPL5 IPl5
INHIBITOR FOR PURPLE PERICARP 5 Inhibitor for purple pericarp-5
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000487 - endosperm color
TO:0000190 - seed coat color
PO:0009010 - seed
-
IPL6 IPl6
INHIBITOR FOR PURPLE LEAF 6 Inhibitor for purple leaf (Pl-i)
Inhibitor for purple leaf (Pl.2(Pl-i))
Inhibitor for purple leaf-6
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000326 - leaf color
TO:0000299 - leaf lamina color
PO:0009025 - vascular leaf
-
IPS1 IPs1*
IPs1
INHIBITOR FOR PURPLE STIGMA 1 Inhibitor for purple stigma (Ps1)
Inhibitor for purple stigma-1
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0009073 - stigma
-
IPS3 IPs3*
IPs2
INHIBITOR FOR PURPLE STIGMA 3 Inhibitor for purple stigma (Ps3)
Inhibitor for purple stigma-2
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0009073 - stigma
-
IPSA IPsa(IPs1)
IPsa
IPs1
Ips3
INHIBITOR FOR PURPLE STIGMA A Inhibitor for purple stigma-a (Psa)
Inhibitor for purple stigma-a
Inhibitor for purple stigma-3
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0009073 - stigma
-
PC Pc
PURPLE COLEOPTILE Purple coleoptile
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000367 - basal leaf sheath color
PO:0020104 - leaf sheath
-
PJ Pj
PURPLE JUNCTURA Purple junctura
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000364 - leaf collar color
PO:0006012 - leaf collar
-
PJB Pjb
PURPLE JUNCTURA BACK Purple junctura back
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000364 - leaf collar color
PO:0006012 - leaf collar
-
PLA1 pla1
plt1
CYP78A11
PLASTOCHRON 1 plastochron1
plastochron 1
plastochron-1
Cytochrome P450 78A11
Protein PLASTOCHRON1
10 Heterochrony
Coloration - Anthocyanin
GO:0010229 - inflorescence development
GO:0048366 - leaf development
GO:0020037 - heme binding
GO:0051781 - positive regulation of cell division
GO:0055114 - oxidation reduction
GO:0009055 - electron carrier activity
GO:0007275 - multicellular organismal development
GO:0004497 - monooxygenase activity
TO:0000369 - vegetative growth time
TO:0000050 - inflorescence branching
TO:0000730 - mitotic cell cycle trait
TO:0000659 - phyllochron
TO:0002638 - shoot meristem development
TO:0000621 - inflorescence development trait
PO:0020122 - inflorescence axis
PO:0020148 - shoot apical meristem
Os10g0403000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
image Id ( 6707 )
PLG Plg
PURPLE LIGULE Purple ligule
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000197 - ligule color
PO:0020105 - ligule
-
PLM Plm(Pla)
Pla
Plm
PURPLE LEAF MARGIN Purple leaf margin
Purple leaf apex
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000299 - leaf lamina color
PO:0020039 - leaf lamina
-
PM Pm(Sp)
Sp
Pm
PURPLE SEPTUM Purple septum
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000059 - node color
TO:0000426 - internode color
PO:0005005 - shoot internode
PO:0020141 - stem node
-
PMR Pmr(Plm)
Plm
Pmr
PURPLE MIDRIB Purple midrib
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000299 - leaf lamina color
PO:0020039 - leaf lamina
-
PNR Pnr
PURPLE NODAL RING Purple nodal ring
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000059 - node color
PO:0020141 - stem node
-
PS3 Ps3(Ps2)
Ps2
Ps3
PURPLE STIGMA 3 Purple stigma3
Purple stigma 3
Purple stigma-3
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0009073 - stigma
-
PSH Psh
PURPLE LEAF SHEATH Purple leaf sheath
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000367 - basal leaf sheath color
PO:0020104 - leaf sheath
-
PU Pu
PURPLE PULVINUS Purple pulvinus
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000059 - node color
PO:0020141 - stem node
-
PX Px
PURPLE LEAF AXIL Purple leaf axil
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000299 - leaf lamina color
TO:0000059 - node color
PO:0020039 - leaf lamina
-
ILB Ilb*
Ilb
INHIBITOR OF LEAF BLADE COLOR Inhibitor of leaf blade color
Inhibitor for purple leaf blade
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000299 - leaf lamina color
TO:0000367 - basal leaf sheath color
PO:0020104 - leaf sheath
-
IPSB IPsb(IPs2)
IPsb
IPs2
Ips4
INHIBITOR FOR PURPLE STIGMA B Inhibitor for purple stigma-b (Psb)
Inhibitor for purple stigma-b
Inhibitor for purple stigma-4
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0009073 - stigma
-
PRPA Prpa(Pp)
Pp
Prpa
Prp1
PURPLE PERICARP-A Purple pericarp-a
Purple pericarp
Purple pericarp-1
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000190 - seed coat color
PO:0009088 - seed coat
-
PAU Pau
PURPLE AURICLE Purple auricle
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000077 - shoot anatomy and morphology trait
TO:0000294 - auricle color
PO:0020106 - leaf sheath auricle
-
PN Pn
PURPLE NODE Purple node
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000197 - ligule color
TO:0000299 - leaf lamina color
TO:0000059 - node color
TO:0000364 - leaf collar color
TO:0000294 - auricle color
PO:0006012 - leaf collar
PO:0009025 - vascular leaf
PO:0020105 - ligule
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
-
RD Rd
DFR
OsDFR
OS-DFR
RED PERICARP AND SEED COAT Red pericarp and seed coat
dihydroflavonol 4-reductase
dihydroflavonol-4-reductase
1 Biochemical character
Coloration - Anthocyanin
Coloration - Others
Seed
Tolerance and resistance - Stress tolerance
GO:0003824 - catalytic activity
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0044237 - cellular metabolic process
GO:0050662 - coenzyme binding
GO:0051555 - flavonol biosynthetic process
TO:0000707 - pericarp color
TO:0000487 - endosperm color
TO:0000190 - seed coat color
TO:0000486 - seed color
TO:0000075 - light sensitivity
PO:0009088 - seed coat
PO:0009089 - endosperm
Os01g0633500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
A A(Sp)
Sp
Ap
ANTHOCYANIN ACTIVATOR, RED PERICARP AND SEED COAT Anthocyanin activator
ANTHOCYANIN ACTIVATOR
Activator for anthocyanin pigmentation
1 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000140 - apiculus color
PO:0006033 - paleal apiculus
-
PIN1 Pin1
PURPLE INTERNODE 1 Purple internode1
Purple internode 1
Purple internode-1
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000364 - leaf collar color
TO:0000059 - node color
TO:0000294 - auricle color
TO:0000426 - internode color
TO:0000367 - basal leaf sheath color
PO:0006012 - leaf collar
PO:0020104 - leaf sheath
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
PO:0020142 - stem internode
-
PL2 pl2(t)
pl2
PURPLE LEAF 2 purple leaf2
purple leaf 2
purple leaf-2
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000264 - lemma and palea color
TO:0000367 - basal leaf sheath color
TO:0000056 - stem color
TO:0000071 - anthocyanin content
TO:0000326 - leaf color
TO:0000299 - leaf lamina color
PO:0009025 - vascular leaf
PO:0009047 - stem
PO:0009049 - inflorescence
-
P P(Pa,Pb,Pc)
A
Pa
COLORED APICULUS Colored apiculus
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000140 - apiculus color
PO:0006033 - paleal apiculus
-
PS2 Ps2(Ps1)
Ps1
Ps2
PURPLE STIGMA 2 Purple stigma2
Purple stigma 2
Purple stigma-2
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0006061 - stigma epidermis
-
PR Pr(Rp)
Rp
Pr
PURPLE HULL Purple hull
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000264 - lemma and palea color
TO:0000190 - seed coat color
PO:0009037 - lemma
PO:0009038 - palea
PO:0009088 - seed coat
-
PS1 Ps1
PURPLE STIGMA 1 (GAISENMOCHI) Purple stigma1 (Gaisenmochi)
Purple stigma 1
Purple stigma-1(Gaisenmochi)1
Purple stigma-1
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000185 - stigma color
PO:0006061 - stigma epidermis
-
PRPB Prpb(Pb)
Pb
Prpb
Prp2
PURPLE PERICARP-B Purple pericarp-b
Purple pericarp-2
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000190 - seed coat color
PO:0009088 - seed coat
-
PL Pl
Pl1
PURPLE LEAF Purple leaf
Purple leaf-1
4 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000364 - leaf collar color
TO:0000367 - basal leaf sheath color
TO:0000299 - leaf lamina color
TO:0000059 - node color
TO:0000426 - internode color
TO:0000294 - auricle color
TO:0000197 - ligule color
PO:0006012 - leaf collar
PO:0009025 - vascular leaf
PO:0020104 - leaf sheath
PO:0020105 - ligule
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
PO:0020142 - stem internode
Os04g0557800/Os04g0557500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
IPL1 IPl1
INHIBITOR FOR PURPLE LEAF 1 Inhibitor for Purple leaf 1
Inhibitor for purple leaf-1
5 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000426 - internode color
TO:0000299 - leaf lamina color
TO:0000197 - ligule color
TO:0000364 - leaf collar color
TO:0000294 - auricle color
TO:0000059 - node color
PO:0006012 - leaf collar
PO:0009025 - vascular leaf
PO:0020105 - ligule
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
PO:0020142 - stem internode
-
IPL2 IPl2
INHIBITOR FOR PURPLE LEAF 2 Inhibitor for purple leaf2
Inhibitor for purple leaf 2
Inhibitor for purple leaf-2
6 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000294 - auricle color
TO:0000197 - ligule color
TO:0000059 - node color
TO:0000426 - internode color
TO:0000367 - basal leaf sheath color
TO:0000299 - leaf lamina color
TO:0000364 - leaf collar color
PO:0006012 - leaf collar
PO:0009025 - vascular leaf
PO:0020104 - leaf sheath
PO:0020105 - ligule
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
PO:0020142 - stem internode
-
IPL4 IPl4
INHIBITOR FOR PURPLE PERICARP 4 Inhibitor for purple pericarp-4
6 Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000190 - seed coat color
TO:0000299 - leaf lamina color
TO:0000487 - endosperm color
PO:0009025 - vascular leaf
PO:0009088 - seed coat
-
C C
Cp
OsC1
Os-C1
OsMyb6
Myb6
CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin
Chromogen
Rice C1 anthocyanin regulatory gene
myb transcription factor 6
transcription factor MYB6
Oryza saliva C1
rice homolog of maize C1
6 Reproductive organ - Inflorescence
Coloration - Anthocyanin
Other
GO:0009812 - flavonoid metabolic process
GO:0003677 - DNA binding
GO:0009718 - anthocyanin biosynthetic process
GO:0031540 - regulation of anthocyanin biosynthetic process
TO:0000190 - seed coat color
TO:0000367 - basal leaf sheath color
TO:0000141 - awn color
TO:0000071 - anthocyanin content
TO:0000426 - internode color
TO:0000264 - lemma and palea color
TO:0000400 - sterile lemma color
TO:0000326 - leaf color
TO:0000364 - leaf collar color
TO:0000140 - apiculus color
PO:0005005 - shoot internode
PO:0006012 - leaf collar
PO:0006032 - lemma awn
PO:0006033 - paleal apiculus
PO:0009010 - seed
PO:0009025 - vascular leaf
PO:0009037 - lemma
PO:0009038 - palea
PO:0020104 - leaf sheath
Os06g0205100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
CHS CHS*
Oschs
chs
chas
OsCHS
OsCHS1
CHS1
OsPKS26
PKS26
CHALCONE SYNTHASE Chalcone synthase
Naregenin-chalcone synthase
chalcone synthase
chalcone synthase 1
polyketide synthase 26
11 Biochemical character
Coloration - Anthocyanin
Seed
Tolerance and resistance
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
GO:0009411 - response to UV
GO:0009813 - flavonoid biosynthetic process
GO:0008415 - acyltransferase activity
GO:0051553 - flavone biosynthetic process
GO:0010332 - response to gamma radiation
GO:0042742 - defense response to bacterium
GO:0051555 - flavonol biosynthetic process
GO:0016210 - naringenin-chalcone synthase activity
TO:0000707 - pericarp color
TO:0000290 - flavonoid content
TO:0000175 - bacterial blight disease resistance
TO:0000160 - UV light sensitivity
PO:0009047 - stem
Os11g0530600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
PRT Prt*
Prt
PURPLE ROOT Purple root
Coloration - Anthocyanin
GO:0009812 - flavonoid metabolic process
TO:0000065 - root color
PO:0009005 - root
-
RA Ra*
bhlh13
OsbHLH013
OsbHLH13
Ra
OSB1
Ra1
OsGL3A
GL3A
TRANSCRIPTIONAL ACTIVATOR A Rice R gene (Anthocyanin biosynthesis) : a
basic helix loop helix 13
Rice R gene (Anthocyanin biosynthesis)-a
GLABRA3A
GLABRA 3A
4 Coloration - Anthocyanin
GO:0009536 - plastid
GO:0009812 - flavonoid metabolic process
GO:0031542 - positive regulation of anthocyanin biosynthetic process
GO:0005739 - mitochondrion
TO:0000190 - seed coat color
TO:0000487 - endosperm color
TO:0000071 - anthocyanin content
PO:0009088 - seed coat
PO:0009089 - endosperm
Os04g0557800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
RB Rb
Rb*
bhlh165
OsbHLH165
TRANSCRIPTIONAL ACTIVATOR B Rice R gene : b R gene family
Rice R gene-b
basic/helix-loop-helix 165
basic helix loop helix 165
1 Coloration - Anthocyanin
GO:0045449 - regulation of transcription
GO:0005739 - mitochondrion
GO:0030528 - transcription regulator activity
GO:0009812 - flavonoid metabolic process
GO:0005634 - nucleus
TO:0000190 - seed coat color
TO:0000487 - endosperm color
PO:0009088 - seed coat
PO:0009089 - endosperm
Os01g0577300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
_ UGT
_ UDP-glycosyltransferase
UDP-glycosyl transferase
6 Biochemical character
Coloration - Anthocyanin
Seed
GO:0016758 - transferase activity, transferring hexosyl groups
GO:0009718 - anthocyanin biosynthetic process
TO:0000707 - pericarp color
Os06g0192100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
F3H1 OsF3H-1
F3H-1
OsF3H1
OsF3H
F3H
FLAVANONE 3-HYDROXYLASE 1 Flavanone 3-hydroxylase 1
4 Biochemical character
Coloration - Anthocyanin
Seed
GO:0009718 - anthocyanin biosynthetic process
GO:0045486 - naringenin 3-dioxygenase activity
GO:0010224 - response to UV-B
GO:0016491 - oxidoreductase activity
GO:0051555 - flavonol biosynthetic process
TO:0000707 - pericarp color
Os04g0662600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
F3H2 OsF3H-2
F3H-2
OsF3H2
FLAVANONE 3-HYDROXYLASE 2 Flavanone 3-hydroxylase 2
10 Biochemical character
Coloration - Anthocyanin
GO:0009718 - anthocyanin biosynthetic process
GO:0051555 - flavonol biosynthetic process
Os10g0536400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
F3H3 OsF3H-3
F3H-3
OsF3H3
FLAVANONE 3-HYDROXYLASE 3 Flavanone 3-hydroxylase 3
4 Biochemical character
Coloration - Anthocyanin
GO:0009718 - anthocyanin biosynthetic process
GO:0051555 - flavonol biosynthetic process
GO:0046872 - metal ion binding
GO:0016491 - oxidoreductase activity
Os04g0667200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
_ OsCHS2
CHS2
OsPKS08
OsPKS8
PKS08
PKS8
_ chalcone synthase 2
polyketide synthase 8
7 Biochemical character
Coloration - Anthocyanin
GO:0016210 - naringenin-chalcone synthase activity
GO:0009813 - flavonoid biosynthetic process
Os07g0214900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
_ Kala3
_ Key gene for black coloration by anthocyanin accumulation on chromosome 3
3 Coloration - Anthocyanin
Seed
GO:0031542 - positive regulation of anthocyanin biosynthetic process
TO:0000707 - pericarp color
TO:0000071 - anthocyanin content
-
_ Kala1
_ Key gene for black coloration by anthocyanin accumulation on chromosome 1
1 Coloration - Anthocyanin
Seed
GO:0031542 - positive regulation of anthocyanin biosynthetic process
TO:0000707 - pericarp color
TO:0000071 - anthocyanin content
-
ANS ANS
OsANS1
ANS1
LDOX
ANTHOCYANIDIN SYNTHASE anthocyanidin synthase
leucoanthocyanidin dioxygenase
1 Biochemical character
Coloration - Anthocyanin
Coloration - Others
Seed
Tolerance and resistance - Stress tolerance
GO:0050589 - leucocyanidin oxygenase activity
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0010023 - proanthocyanidin biosynthetic process
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0005506 - iron ion binding
GO:0007033 - vacuole organization
GO:0009611 - response to wounding
GO:0009753 - response to jasmonic acid stimulus
GO:0009718 - anthocyanin biosynthetic process
GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
TO:0000168 - abiotic stress trait
TO:0000707 - pericarp color
TO:0000290 - flavonoid content
TO:0000075 - light sensitivity
TO:0000071 - anthocyanin content
Os01g0372500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
55 Hit First Previous 1-50 51-55 Next Last All
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