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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
GHD7 Ghd2
Ghd7
OsGhd7
OsCCT26
OsCMF8
OsI
Ghd7/Hd4
Hd4
EH7-1/Hd4
Ghd7-0a
EH7-1
EH7/Ghd7
EH7
OsEH7
GLW7.1
OsGLW7.1
 HEADING DATE 7 heading date 7
"Grain number
plant height
and heading date7"
"GRAIN NUMBER
PLANT HEIGHT AND HEADING DATE 7"
CCT domain-containing gene 26
CCT (CO, CO-LIKE and TOC1) domain protein 26
CCT domain protein 26
CCT MOTIF FAMILY (CMF) gene 8
Early heading 7
"Grain Length
Width and Weight 7.1"
Grain height date 7
 7 Character as QTL - Yield and productivity
Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Grain shape
Character as QTL - Plant growth activity
Character as QTL - Grain quality
Heterochrony
Seed - Physiological traits
Vegetative organ - Culm
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
 GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009648 - photoperiodism
GO:0005985 - sucrose metabolic process
GO:0042128 - nitrate assimilation
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0045848 - positive regulation of nitrogen utilization
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0008643 - carbohydrate transport
GO:0048573 - photoperiodism, flowering
GO:0051781 - positive regulation of cell division
GO:0009416 - response to light stimulus
GO:0009740 - gibberellic acid mediated signaling
GO:0010229 - inflorescence development
GO:0007623 - circadian rhythm
GO:0030307 - positive regulation of cell growth
GO:0006109 - regulation of carbohydrate metabolic process
GO:0015770 - sucrose transport
GO:0006808 - regulation of nitrogen utilization
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0010109 - regulation of photosynthesis
GO:0009744 - response to sucrose stimulus
GO:0009745 - sucrose mediated signaling
 TO:0000621 - inflorescence development trait
TO:0000397 - grain size
TO:0000382 - 1000-seed weight
TO:0000734 - grain length
TO:0002653 - endosperm storage protein content
TO:0000590 - grain weight
TO:0002675 - gibberellic acid content
TO:0000266 - chalky endosperm
TO:0000469 - days to maturity
TO:0000456 - spikelet number
TO:0000229 - photoperiod sensitivity
TO:0000207 - plant height
TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0000050 - inflorescence branching
TO:0002759 - grain number
TO:0000011 - nitrogen sensitivity
TO:0000196 - amylose content
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000152 - panicle number
TO:0000696 - starch content
TO:0000107 - endosperm storage protein-1 content
TO:0000109 - endosperm storage protein-2 content
TO:0000137 - days to heading
TO:0000019 - seedling height
TO:0000211 - gel consistency
TO:0002616 - flowering time
TO:0000710 - globulin protein content
TO:0000449 - grain yield per plant
TO:0000352 - plant dry weight
TO:0002680 - albumin content
TO:0000357 - growth and development trait
 PO:0001083 - inflorescence development stage
Os07g0261200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g15770.1
RR21 OsRR21
Rrb1
Orr1
OsRR19
RR19
OsRRB1
ORR1
OsRRB4
RRB4
 B-TYPE RESPONSE REGULATOR 1 B-type response regulator 1
B-type RR 1
ORYZA SATIVA RESPONSE REGULATOR 1
 3 Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
Reproductive organ - panicle
Heterochrony
Vegetative organ - Root
 GO:0010229 - inflorescence development
GO:0009737 - response to abscisic acid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009735 - response to cytokinin stimulus
GO:0045449 - regulation of transcription
GO:0009414 - response to water deprivation
GO:0009723 - response to ethylene stimulus
GO:0009736 - cytokinin mediated signaling
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0000156 - two-component response regulator activity
GO:0009409 - response to cold
GO:0005634 - nucleus
 TO:0000173 - ethylene sensitivity
TO:0000040 - panicle length
TO:0006031 - inflorescence size
TO:0000276 - drought tolerance
TO:0000621 - inflorescence development trait
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000557 - secondary branch number
TO:0000172 - jasmonic acid sensitivity
TO:0000547 - primary branch number
 PO:0001083 - inflorescence development stage
PO:0009010 - seed
PO:0025034 - leaf
PO:0009006 - shoot system
PO:0009089 - endosperm
PO:0008037 - seedling
Os03g0224200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g12350.1
LOC_Os03g12350.2
LOC_Os03g12350.4
HST1 RR22
OsRR22
Rrb4
Orr2
OsRR20
RR20
OsRRB4
RRB4
OsHST1
OsRRB5
RRB5
 HITOMEBORE SALT TOLERANT 1 B-type response regulator 2
B-type RR 4
hitomebore salt tolerant 1
 6 Heterochrony
Tolerance and resistance - Stress tolerance
 GO:0009651 - response to salt stress
GO:0006970 - response to osmotic stress
GO:0005634 - nucleus
GO:0009753 - response to jasmonic acid stimulus
GO:0000156 - two-component response regulator activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0045449 - regulation of transcription
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0010446 - response to alkalinity
GO:0009735 - response to cytokinin stimulus
 TO:0000172 - jasmonic acid sensitivity
TO:0000276 - drought tolerance
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000481 - alkali sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
 PO:0009013 - portion of meristem tissue
Os06g0183100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g08440.1
RR23 OsRR23
Rrb5
Orr3
OsRR18
RR18
OsRRB5
RRB5
OsRRB3
RRB3
 B-TYPE RESPONSE REGULATOR 3 B-type response regulator 3
B-type RR 5
 2 Tolerance and resistance - Stress tolerance
Heterochrony
 GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0000156 - two-component response regulator activity
GO:0009753 - response to jasmonic acid stimulus
GO:0005634 - nucleus
GO:0009736 - cytokinin mediated signaling
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009735 - response to cytokinin stimulus
GO:0045449 - regulation of transcription
 TO:0000276 - drought tolerance
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000172 - jasmonic acid sensitivity
 PO:0009013 - portion of meristem tissue
Os02g0796500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g55320.1
DLC1 RR24
OsRR24
Rrb2
Orr4
OsRR17
RR17
OsRRB2
RRB2
OsRR24/LEPTO1
OsLEPTO1
LEPTO1
OsDLC1
 DEFECTIVE LEPTOTENE CHROMOSOME 1 B-type response regulator 4
B-type RR 2
LEPTOTENE1
LEPTOTENE 1
Defective Leptotene Chromosome 1
 2 Reproductive organ - Pollination, fertilization, fertility - Sterility
Heterochrony
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Tolerance and resistance - Stress tolerance
 GO:0009735 - response to cytokinin stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009409 - response to cold
GO:0052543 - callose deposition in cell wall
GO:0045449 - regulation of transcription
GO:0000156 - two-component response regulator activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009554 - megasporogenesis
GO:0048653 - anther development
GO:0012501 - programmed cell death
GO:0009555 - pollen development
GO:0000237 - leptotene
GO:0009736 - cytokinin mediated signaling
GO:0051276 - chromosome organization
GO:0042138 - meiotic DNA double-strand break formation
GO:0005634 - nucleus
 TO:0000615 - abscisic acid sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000276 - drought tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0000485 - sterility related trait
TO:0000303 - cold tolerance
 PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009005 - root
PO:0009013 - portion of meristem tissue
PO:0025313 - tapetum
PO:0009009 - plant embryo
Os02g0182100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g08500.1
RR25 OsRR25
Rrb3
Orr5
OsORR5
OsRR21
RR21
OsRRB3
RRB3
OsRRB6
RRB6
 B-TYPE RESPONSE REGULATOR 5 B-type response regulator 5
B-type RR 3
 6 Tolerance and resistance - Stress tolerance
Heterochrony
 GO:0009735 - response to cytokinin stimulus
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0000156 - two-component response regulator activity
GO:0009737 - response to abscisic acid stimulus
GO:0009409 - response to cold
GO:0045449 - regulation of transcription
GO:0009414 - response to water deprivation
GO:0009753 - response to jasmonic acid stimulus
 TO:0000303 - cold tolerance
TO:0000167 - cytokinin sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000276 - drought tolerance
 Os06g0647200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g43910.1
LOC_Os06g43920.1
RR26 OsRR26
Rrb6
Orr6
OsRR16
RR16
OsRRB6
OsRRB1
RRB1
 B-TYPE RESPONSE REGULATOR 6 B-TYPE response regulator 6
B-type RR 6
 1 Tolerance and resistance - Stress tolerance
Heterochrony
 GO:0009735 - response to cytokinin stimulus
GO:0045449 - regulation of transcription
GO:0009737 - response to abscisic acid stimulus
GO:0000156 - two-component response regulator activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0009409 - response to cold
GO:0009753 - response to jasmonic acid stimulus
GO:0009736 - cytokinin mediated signaling
GO:0009414 - response to water deprivation
GO:0005634 - nucleus
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000167 - cytokinin sensitivity
 PO:0009005 - root
Os01g0904700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g67770.1
CSL1 csl1
 COMPACT SHOOT AND LEAFY HEAD 1 compact shoot and leafy head 1
 Heterochrony
 GO:0010228 - vegetative to reproductive phase transition
 -
PPS OsWD40-55
OsCOP1
COP1
YEL
OsYEL
OsPPS
COP1-1
OsCOP1-1
OsRING347
RING347
 PETER PAN SYNDROME COP1 ortholog
CONSTITUTIVE PHOTOMORPHOGENIC 1
yellowish-pericarp embryo lethal
RING-type E3 ubiquitin ligase 347
 2 Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Embryo
Coloration - Others
Heterochrony
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
 GO:0010218 - response to far red light
GO:0046283 - anthocyanin metabolic process
GO:0005634 - nucleus
GO:0010119 - regulation of stomatal movement
GO:0008270 - zinc ion binding
GO:0016874 - ligase activity
GO:0009416 - response to light stimulus
GO:0009628 - response to abiotic stimulus
GO:0010228 - vegetative to reproductive phase transition
GO:0046685 - response to arsenic
GO:0009640 - photomorphogenesis
GO:0009641 - shade avoidance
GO:0048573 - photoperiodism, flowering
GO:0009637 - response to blue light
GO:0010224 - response to UV-B
GO:0006281 - DNA repair
GO:0009793 - embryonic development ending in seed dormancy
GO:0009266 - response to temperature stimulus
GO:0009962 - regulation of flavonoid biosynthetic process
 TO:0000229 - photoperiod sensitivity
TO:0000064 - embryo related trait
TO:0000601 - UV-B light sensitivity
TO:0000326 - leaf color
TO:0000675 - ferulic acid content
TO:0006006 - monosaccharide content
TO:0000397 - grain size
TO:0006007 - polysaccharide content
TO:0000137 - days to heading
TO:0000707 - pericarp color
TO:0000051 - stem strength
TO:0000430 - germination rate
TO:0000159 - blue light sensitivity
TO:0000168 - abiotic stress trait
TO:0000590 - grain weight
TO:0000075 - light sensitivity
TO:0000432 - temperature response trait
TO:0000396 - grain yield
TO:0002616 - flowering time
TO:0000130 - far red light sensitivity
TO:0000290 - flavonoid content
 Os02g0771100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g53140.1
PLA1 pla1
OsPLA1
plt1
CYP78A11
 PLASTOCHRON 1 plastochron1
plastochron 1
plastochron-1
Cytochrome P450 78A11
Protein PLASTOCHRON1
 10 Coloration - Anthocyanin
Seed - Morphological traits - Grain shape
Heterochrony
Reproductive organ - panicle
Vegetative organ - Leaf
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
 GO:0010228 - vegetative to reproductive phase transition
GO:0010432 - bract development
GO:0051781 - positive regulation of cell division
GO:0055114 - oxidation reduction
GO:0004497 - monooxygenase activity
GO:0007275 - multicellular organismal development
GO:0009055 - electron carrier activity
GO:0010229 - inflorescence development
GO:0020037 - heme binding
GO:0048366 - leaf development
GO:0009740 - gibberellic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
 TO:0000369 - vegetative growth time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000346 - tiller number
TO:0000391 - seed size
TO:0002638 - shoot meristem development
TO:0000659 - phyllochron
TO:0000166 - gibberellic acid sensitivity
TO:0000050 - inflorescence branching
TO:0000730 - mitotic cell cycle trait
 PO:0020122 - inflorescence axis
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
Os10g0403000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g26340.1
image Id ( 6707 )
DOS OsDOS
OsC3H2
C3H2
OsTZF2
OsCCCH-Zn-4
 DELAY OF THE ONSET OF SENESCENCE delay of the onset of senescence
Zinc finger CCCH domain-containing protein 2
Protein DELAY OF THE ONSET OF SENESCENCE
Tandem zinc finger protein 2
CCCH Zinc Finger Family Gene 2
 1 Heterochrony
Coloration - Chlorophyll
 GO:0003676 - nucleic acid binding
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0008270 - zinc ion binding
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0010150 - leaf senescence
GO:0009737 - response to abscisic acid stimulus
 TO:0000455 - seed set percent
TO:0000249 - leaf senescence
TO:0000495 - chlorophyll content
TO:0000615 - abscisic acid sensitivity
TO:0000040 - panicle length
TO:0000447 - filled grain number
TO:0000299 - leaf lamina color
TO:0000207 - plant height
TO:0002616 - flowering time
TO:0000227 - root length
 PO:0025034 - leaf
PO:0009046 - flower
PO:0009005 - root
PO:0009010 - seed
PO:0008037 - seedling
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009025 - vascular leaf
PO:0006079 - shoot meristem
PO:0000017 - vascular leaf primordium
Os01g0192000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g09620.1
LOC_Os01g09620.2
CCA1 OsCCA1
OsLHY
LHY
LHY-like_chr.8
COC1
DLN203
OsDLN203
LEM1
OsLEM1
Nhd1
OsNhd1
 CIRCADIAN CLOCK ASSOCIATED 1 LATE ELONGATED HYPOCOTYL
DLN repressor 203
DLN motif protein 203
lvp1 enhancer mutant 1
N-mediated heading date1
 8 Reproductive organ - Heading date
Reproductive organ - panicle
Heterochrony
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Seed
Character as QTL - Yield and productivity
 GO:0048577 - negative regulation of short-day photoperiodism, flowering
GO:0048578 - positive regulation of long-day photoperiodism, flowering
GO:0006542 - glutamine biosynthetic process
GO:0009907 - response to photoperiod, red light
GO:0010233 - phloem transport
GO:0005985 - sucrose metabolic process
GO:0006537 - glutamate biosynthetic process
GO:0006808 - regulation of nitrogen utilization
GO:0003677 - DNA binding
GO:0005982 - starch metabolic process
GO:0009915 - phloem loading
GO:0050832 - defense response to fungus
GO:0007623 - circadian rhythm
GO:0042752 - regulation of circadian rhythm
GO:0048364 - root development
GO:0031667 - response to nutrient levels
GO:0009635 - response to herbicide
GO:0009743 - response to carbohydrate stimulus
GO:0009730 - detection of carbohydrate stimulus
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0048573 - photoperiodism, flowering
GO:0048316 - seed development
GO:0010229 - inflorescence development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010228 - vegetative to reproductive phase transition
GO:0019740 - nitrogen utilization
 TO:0000058 - herbicide sensitivity
TO:0001015 - photosynthetic rate
TO:0000158 - red light sensitivity
TO:0002673 - amino acid content
TO:0002616 - flowering time
TO:0000011 - nitrogen sensitivity
TO:0000552 - shoot dry weight
TO:0000621 - inflorescence development trait
TO:0000495 - chlorophyll content
TO:0000293 - chlorophyll-a content
TO:0000329 - tillering ability
TO:0000074 - blast disease
TO:0000653 - seed development trait
TO:0000371 - yield trait
TO:0000346 - tiller number
TO:0000295 - chlorophyll-b content
TO:0002639 - shoot branching
TO:0000207 - plant height
TO:0000656 - root development trait
TO:0000137 - days to heading
TO:0000102 - phosphorus sensitivity
TO:0000328 - sucrose content
 PO:0009049 - inflorescence
PO:0001170 - seed development stage
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
PO:0009005 - root
PO:0009010 - seed
PO:0009089 - endosperm
PO:0009009 - plant embryo
PO:0000055 - bud
PO:0009006 - shoot system
PO:0025034 - leaf
Os08g0157600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g06110.5
LOC_Os08g06110.4
LOC_Os08g06110.3
LOC_Os08g06110.2
PCL1 OsPCL1
OsLUX
LUX
OsLVP2
LVP2
 PHYTOCLOCK 1 PCL1 homolog
LUX ARRHYTHMO
long vegetative phase2
 1 Tolerance and resistance - Stress tolerance
Heterochrony
Character as QTL - Yield and productivity
Reproductive organ - Heading date
 GO:0048510 - regulation of timing of transition from vegetative to reproductive phase
GO:0009648 - photoperiodism
GO:0048573 - photoperiodism, flowering
GO:0005737 - cytoplasm
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0003700 - transcription factor activity
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0007623 - circadian rhythm
GO:0010228 - vegetative to reproductive phase transition
GO:0009737 - response to abscisic acid stimulus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048511 - rhythmic process
 TO:0000396 - grain yield
TO:0006001 - salt tolerance
TO:0002616 - flowering time
TO:0000229 - photoperiod sensitivity
TO:0000137 - days to heading
TO:0002662 - leaf rolling tolerance
TO:0000605 - hydrogen peroxide content
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
 PO:0025034 - leaf
Os01g0971800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g74020.1
TOC1 OsTOC1
OsPRR1
Os-PRR1
PRR1
OsRRA21
OsCCT07
 TIMING OF CAB EXPRESSION 1 Two-component response regulator-like PRR1
Pseudo-response regulator 1
A-type RR 21
CCT domain-containing gene 7
CCT (CO, CO-LIKE and TOC1) domain protein 7
CCT domain protein 7
 2 Tolerance and resistance - Disease resistance
Heterochrony
Reproductive organ - Heading date
Vegetative organ - Culm
 GO:0000156 - two-component response regulator activity
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0031349 - positive regulation of defense response
GO:0048511 - rhythmic process
GO:0048573 - photoperiodism, flowering
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0007623 - circadian rhythm
GO:0042752 - regulation of circadian rhythm
GO:0005634 - nucleus
 TO:0002616 - flowering time
TO:0000112 - disease resistance
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000346 - tiller number
TO:0000329 - tillering ability
 PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009009 - plant embryo
PO:0000055 - bud
PO:0009010 - seed
PO:0009089 - endosperm
PO:0009006 - shoot system
Os02g0618200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g40510.1
KAN4 OsKAN4
 KANADI 4 OsKANADI4
KANADI4
 3 Heterochrony
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
 GO:0009944 - polarity specification of adaxial/abaxial axis
GO:0003677 - DNA binding
GO:0040034 - regulation of development, heterochronic
GO:0003682 - chromatin binding
GO:0048366 - leaf development
 PO:0001050 - leaf development stage
Os03g0766500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g55760.1
BOP1 OsNPR5
NPR5
NH4
OsNH4
OsBOP1
OsBTBA3
BTBA3
 BLADE-ON-PETIOLE 1 NPR1-like gene 5
NPR1 homolog 4
OsBLADE-ON-PETIOLE1
BTB-type E3 ubiquitin ligase A3
 1 Vegetative organ - Leaf
Heterochrony
 GO:0048366 - leaf development
GO:0010254 - nectary development
GO:0048439 - flower morphogenesis
GO:0010227 - floral organ abscission
GO:0010582 - floral meristem determinacy
GO:0009790 - embryonic development
GO:0040034 - regulation of development, heterochronic
GO:0009944 - polarity specification of adaxial/abaxial axis
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0009954 - proximal/distal pattern formation
 TO:0000492 - leaf shape
TO:0002689 - leaf sheath length
 PO:0000017 - vascular leaf primordium
PO:0020104 - leaf sheath
PO:0020128 - leaf margin
PO:0009105 - inflorescence branch meristem
PO:0020148 - shoot apical meristem
PO:0001050 - leaf development stage
PO:0020105 - ligule
Os01g0948900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g72020.1
LOC_Os01g72020.2
IAA6 OsIAA6
 AUX/IAA PROTEIN 6 Aux/IAA protein 6
 1 Tolerance and resistance - Stress tolerance
Heterochrony
 GO:0006417 - regulation of translation
GO:0006351 - transcription, DNA-dependent
GO:0009733 - response to auxin stimulus
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0005634 - nucleus
GO:0040034 - regulation of development, heterochronic
GO:0009408 - response to heat
GO:0009609 - response to symbiotic bacterium
GO:0034021 - response to silicon dioxide
GO:0009734 - auxin mediated signaling pathway
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000259 - heat tolerance
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
 Os01g0741900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g53880.1
LOC_Os01g53880.2
LOC_Os01g53880.3
LOC_Os01g53880.4
LOC_Os01g53880.5
LOC_Os01g53880.6
LOC_Os01g53880.7
MORI1 mori1
 MORI 1 mori1
 3 Heterochrony
 GO:0007275 - multicellular organismal development
 TO:0000137 - days to heading
TO:0000207 - plant height
TO:0000492 - leaf shape
 PO:0009047 - stem
PO:0009025 - vascular leaf
PO:0009082 - spikelet floret
- image Id ( 6814 )
PLA2 pla2
pla2(pla2-1, pla2-2)
plt2
LHD2
OsLHD2
RRM1-14
OsRRM1-14
 PLASTOCHRON 2 plastochron2
PLASTOCHRON2
LEAFY HEAD2
Protein terminal ear1 homolog
Protein PLASTOCHRON2
LEAFY HEAD2
leafy-head2
RNA recognition motif domain protein 1-14
 1 Vegetative organ - Culm
Vegetative organ - Leaf
Heterochrony
 GO:0010432 - bract development
GO:0005634 - nucleus
GO:0000166 - nucleotide binding
GO:0051781 - positive regulation of cell division
GO:0048366 - leaf development
GO:0010229 - inflorescence development
GO:0007275 - multicellular organismal development
GO:0009739 - response to gibberellin stimulus
GO:0009740 - gibberellic acid mediated signaling
GO:0003723 - RNA binding
GO:0010228 - vegetative to reproductive phase transition
GO:0048367 - shoot development
GO:0003676 - nucleic acid binding
 TO:0000166 - gibberellic acid sensitivity
TO:0000492 - leaf shape
TO:0000735 - plastochron
TO:0000370 - leaf width
TO:0000654 - shoot development trait
TO:0000135 - leaf length
TO:0000369 - vegetative growth time
TO:0002638 - shoot meristem development
TO:0000361 - stem anatomy and morphology trait
TO:0000730 - mitotic cell cycle trait
TO:0000346 - tiller number
TO:0000655 - leaf development trait
TO:0000207 - plant height
TO:0006021 - vegetative to reproductive phase transition trait
 PO:0000037 - shoot apex
PO:0020148 - shoot apical meristem
PO:0020142 - stem internode
PO:0020031 - radicle
PO:0009047 - stem
PO:0009034 - flower bract
PO:0009025 - vascular leaf
PO:0025527 - shoot system development stage
PO:0020122 - inflorescence axis
Os01g0907900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g68000.1
GO go
go1
pla3
PLA3
PLA3/GO
OsLBD3-7
LBD3-7
OsLBD25
LBD25
 GOLIATH goliath
PLASTOCHRON 3
plastochron3
PLASTOCHRON3/GOLIATH
lateral organ boundaries domain 3-7
 3 Seed - Morphological traits - Embryo
Heterochrony
Biochemical character
Vegetative organ - Leaf
 GO:0005886 - plasma membrane
GO:0004180 - carboxypeptidase activity
GO:0010073 - meristem maintenance
GO:0004181 - metallocarboxypeptidase activity
GO:0016020 - membrane
GO:0007275 - multicellular organismal development
GO:0046872 - metal ion binding
GO:0009640 - photomorphogenesis
GO:0050793 - regulation of developmental process
GO:0009908 - flower development
GO:0006508 - proteolysis
GO:0010080 - regulation of floral meristem growth
GO:0005634 - nucleus
GO:0010081 - regulation of inflorescence meristem growth
GO:0010082 - regulation of root meristem growth
GO:0010305 - leaf vascular tissue pattern formation
GO:0010229 - inflorescence development
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0051781 - positive regulation of cell division
GO:0009653 - anatomical structure morphogenesis
GO:0009790 - embryonic development
 TO:0000287 - brown rice shape
TO:0000064 - embryo related trait
TO:0000655 - leaf development trait
 PO:0025034 - leaf
PO:0001050 - leaf development stage
PO:0009010 - seed
PO:0009009 - plant embryo
Os03g0790600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g57670.1
LOC_Os03g57660.1
LOC_Os03g57660.2
LOC_Os03g57660.3
LOC_Os03g57660.4
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/rice/oryzabase