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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
RDR2 OsRDR2
FEM1
OsFEM1
 RNA-DEPENDENT RNA POLYMERASE 2 RNA-dependent RNA polymerase 2
Probable RNA-dependent RNA polymerase 2
Five Elements Mountain 1
 4 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Biochemical character
Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0003723 - RNA binding
GO:0003968 - RNA-directed RNA polymerase activity
GO:0042742 - defense response to bacterium
GO:0031047 - gene silencing by RNA
GO:0009555 - pollen development
GO:0043045 - DNA methylation during embryonic development
GO:0051445 - regulation of meiotic cell cycle
GO:0048229 - gametophyte development
GO:0009553 - embryo sac development
GO:0030422 - production of siRNA involved in RNA interference
GO:0010426 - DNA methylation on cytosine within a CHH sequence
GO:0048443 - stamen development
 TO:0000421 - pollen fertility
TO:0002676 - brassinosteroid content
TO:0002675 - gibberellic acid content
TO:0000175 - bacterial blight disease resistance
TO:0000455 - seed set percent
 Os04g0465700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g39160.1
MKK6 OsMKK6
OsMEK1
MEK1
OsMAPKK6
MAPKK6
OsMPKK6
MPKK6
OsMAP1
MAP1
 MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 MAPK kinase 6
mitogen-activated protein 1
 1 Vegetative organ - Root
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0009751 - response to salicylic acid stimulus
GO:0009414 - response to water deprivation
GO:0009734 - auxin mediated signaling pathway
GO:0042742 - defense response to bacterium
GO:0009553 - embryo sac development
GO:0009739 - response to gibberellin stimulus
GO:0004674 - protein serine/threonine kinase activity
GO:0006468 - protein amino acid phosphorylation
GO:0048229 - gametophyte development
GO:0007292 - female gamete generation
GO:0009733 - response to auxin stimulus
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0048364 - root development
GO:0007097 - nuclear migration
GO:0005524 - ATP binding
 TO:0002669 - diterpenoid phytoalexin content
TO:0001034 - relative plant height
TO:0000100 - shrunken endosperm
TO:0006001 - salt tolerance
TO:0000231 - endospermless
TO:0000175 - bacterial blight disease resistance
TO:0000516 - relative root length
TO:0000358 - female sterility
TO:0002672 - auxin content
TO:0000074 - blast disease
TO:0000615 - abscisic acid sensitivity
TO:0000113 - giant embryo
TO:0000455 - seed set percent
TO:0000656 - root development trait
TO:0000160 - UV light sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000163 - auxin sensitivity
 PO:0025034 - leaf
Os01g0510100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g32660.1
LOC_Os01g32660.2
LOC_Os01g32660.3
LOC_Os01g32660.5
LOC_Os01g32660.4
GL1 gl1
NUDA/GL-1
NUDA/GL1
NUDA
GL-1
OsWOX3B
OsWOX2
OsWOX3
Os WOX3
WOX3B
WOX2
WOX3
LSY1
OsLSY1
DEP
OsDEP
 GLABROUS LEAF AND HULL 1 glabrous leaf and hull1
glabrous leaf and hull 1
glabrous leaf and hull-1
WUSCHEL-related homeobox 3B
leaf lateral symmetry-1
LEAF LATERAL SYMMETRY1
DEPILOUS
 5 Vegetative organ - Leaf
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
 GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0007275 - multicellular organismal development
GO:0006351 - transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009955 - adaxial/abaxial pattern formation
GO:0000079 - regulation of cyclin-dependent protein kinase activity
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0010090 - trichome morphogenesis
 TO:0000492 - leaf shape
TO:0000417 - lemma and palea pubescence
TO:0000370 - leaf width
TO:0000655 - leaf development trait
TO:0000055 - leaf lamina pubescence
TO:0000358 - female sterility
 PO:0020039 - leaf lamina
PO:0009038 - palea
PO:0009037 - lemma
PO:0009062 - gynoecium
PO:0009025 - vascular leaf
PO:0001050 - leaf development stage
Os05g0118700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g02730.1
image Id ( 6759 )
SHL4 shl4
sh4
OsAGO7
SHO2
AGO7
SHL4/SHO2
OsSHL4
OsSHO2
TFS1
OsTFS1
 SHOOTLESS 4 shootless 4
shootless-4
Protein argonaute 7
Protein SHOOTLESS 4
Protein SHOOT ORGANIZATION 2
SHOOT ORGANIZATION2
ARGONAUTE 7
Argonaute 7
thermo-sensitive female sterility 1
 3 Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0070922 - small RNA loading onto RISC
GO:0009888 - tissue development
GO:0009408 - response to heat
GO:0009887 - organ morphogenesis
GO:0030422 - production of siRNA involved in RNA interference
GO:0003676 - nucleic acid binding
GO:0009266 - response to temperature stimulus
GO:0010492 - maintenance of shoot apical meristem identity
GO:0016246 - RNA interference
 TO:0000432 - temperature response trait
TO:0000455 - seed set percent
TO:0000064 - embryo related trait
TO:0000358 - female sterility
TO:0002681 - leaf curling
TO:0000259 - heat tolerance
TO:0000206 - leaf angle
 PO:0009009 - plant embryo
PO:0020144 - apical meristem
Os03g0449200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g33650.1
image Id ( 6809 )
LOG1 OsLOG1
LOG
Log
log
OsLOG
 LONELY GUY 1 LONELY GUY
Lonely Guy
lonely guy
Protein LONELY GUY
Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
 1 Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Panicle, Mode of branching
Seed - Morphological traits - Grain shape
 GO:0010073 - meristem maintenance
GO:0009736 - cytokinin mediated signaling
GO:0009536 - plastid
GO:0048608 - reproductive structure development
GO:0009691 - cytokinin biosynthetic process
GO:0010083 - regulation of vegetative meristem growth
GO:0010076 - maintenance of floral meristem identity
GO:0010077 - maintenance of inflorescence meristem identity
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0010074 - maintenance of meristem identity
GO:0048509 - regulation of meristem development
GO:0048832 - specification of organ number
 TO:0006022 - floral organ development trait
TO:0006032 - panicle size
TO:0000447 - filled grain number
TO:0000919 - grain weight
TO:0000040 - panicle length
TO:0002659 - pistil number
TO:0000017 - anatomy and morphology related trait
TO:0000050 - inflorescence branching
TO:0000089 - panicle type
TO:0002660 - cytokinin content
TO:0000590 - grain weight
TO:0002759 - grain number
 PO:0025530 - reproductive shoot system development stage
PO:0000229 - flower meristem
PO:0009105 - inflorescence branch meristem
PO:0000230 - inflorescence meristem
Os01g0588900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g40630.1
LOC_Os01g40630.2
LOC_Os01g40630.3
BTZ1 OsBTZ1
 BARENTSZ 1 1 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009553 - embryo sac development
GO:0009555 - pollen development
GO:0048440 - carpel development
GO:0048653 - anther development
GO:0051028 - mRNA transport
GO:0006397 - mRNA processing
GO:0003729 - mRNA binding
GO:0048443 - stamen development
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0009409 - response to cold
GO:0009909 - regulation of flower development
GO:0048437 - floral organ development
GO:0008380 - RNA splicing
GO:0006417 - regulation of translation
 TO:0000067 - genic male sterility-thermo sensitive
TO:0006022 - floral organ development trait
TO:0000622 - flower development trait
TO:0000303 - cold tolerance
TO:0000437 - male sterility
TO:0000358 - female sterility
TO:0000455 - seed set percent
 PO:0001004 - anther development stage
PO:0004705 - stamen primordium
PO:0004703 - carpel primordium
PO:0001007 - pollen development stage
PO:0007615 - flower development stage
PO:0009049 - inflorescence
PO:0000229 - flower meristem
Os01g0595100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g41190.2
LOC_Os01g41190.1
BTZ3 OsBTZ3
 BARENTSZ 3 5 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0048443 - stamen development
GO:0048437 - floral organ development
GO:0009909 - regulation of flower development
GO:0009555 - pollen development
GO:0048440 - carpel development
GO:0048653 - anther development
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0009409 - response to cold
GO:0008380 - RNA splicing
GO:0006417 - regulation of translation
GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0051028 - mRNA transport
GO:0006397 - mRNA processing
GO:0003729 - mRNA binding
 TO:0000622 - flower development trait
TO:0000455 - seed set percent
TO:0000067 - genic male sterility-thermo sensitive
TO:0000358 - female sterility
TO:0000437 - male sterility
TO:0000303 - cold tolerance
TO:0006022 - floral organ development trait
 PO:0007615 - flower development stage
PO:0001004 - anther development stage
PO:0001007 - pollen development stage
PO:0009082 - spikelet floret
Os05g0534600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g45830.1
MABS1 OsMABS1
 MEIOSIS ABNORMAL BISEXUAL STERILITY 1 Meiosis Abnormal Bisexual Sterility 1
 1 Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0051321 - meiotic cell cycle
GO:0016020 - membrane
GO:0009555 - pollen development
GO:0005886 - plasma membrane
 TO:0000455 - seed set percent
TO:0000053 - pollen sterility
TO:0000218 - pollen abortion type
TO:0000187 - anther color
TO:0000214 - anther shape
TO:0000531 - anther length
TO:0000437 - male sterility
TO:0000358 - female sterility
TO:0000416 - embryosac abortion
 PO:0001007 - pollen development stage
Os01g0884900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g66170.1
MEKK21 OsMEKK21
 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 21 Mitogen-activated protein kinase kinase kinase 21
MAP kinase kinase kinase 21
 8 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
 GO:0009566 - fertilization
GO:0007165 - signal transduction
GO:0004672 - protein kinase activity
GO:0004709 - MAP kinase kinase kinase activity
GO:0005524 - ATP binding
GO:0007097 - nuclear migration
GO:0007292 - female gamete generation
GO:0009553 - embryo sac development
 TO:0000358 - female sterility
TO:0000455 - seed set percent
 Os08g0421800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g32600.1
MCM5 OsMCM5
 MINI-CHROMOSOME MAINTENANCE PROTEIN 5 micro-chromosome maintenance MCM complex subunit 5
 2 Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0007049 - cell cycle
GO:0005524 - ATP binding
GO:0000347 - THO complex
GO:0003688 - DNA replication origin binding
GO:0003678 - DNA helicase activity
GO:0009553 - embryo sac development
GO:0042555 - MCM complex
GO:0005737 - cytoplasm
GO:0006270 - DNA replication initiation
GO:0003682 - chromatin binding
 TO:0000416 - embryosac abortion
TO:0000455 - seed set percent
TO:0000358 - female sterility
 Os02g0797400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g55410.2
LOC_Os02g55410.1
MLH1 OsMLH1
 MUTL-HOMOLOG 1 MutL-homolog 1
 1 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
 GO:0007131 - reciprocal meiotic recombination
GO:0032389 - MutLalpha complex
GO:0030983 - mismatched DNA binding
GO:0009553 - embryo sac development
GO:0048229 - gametophyte development
GO:0016887 - ATPase activity
GO:0006298 - mismatch repair
GO:0051321 - meiotic cell cycle
GO:0048236 - plant-type spore development
GO:0000795 - synaptonemal complex
GO:0003697 - single-stranded DNA binding
GO:0005712 - chiasma
GO:0005524 - ATP binding
GO:0032390 - MutLbeta complex
GO:0032407 - MutSalpha complex binding
 TO:0000437 - male sterility
TO:0000358 - female sterility
 Os01g0958900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g72880.1
BRCA2 OsBRCA2
 BREAST CANCER 2 BRCA2 orthologue
breast cancer susceptibility protein type 2
 1 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
 GO:0000237 - leptotene
GO:0006302 - double-strand break repair
GO:0007129 - synapsis
GO:0007130 - synaptonemal complex assembly
GO:0051321 - meiotic cell cycle
GO:0006310 - DNA recombination
GO:0000238 - zygotene
 TO:0000437 - male sterility
TO:0000729 - meiotic cell cycle trait
TO:0000358 - female sterility
 PO:0009006 - shoot system
PO:0025034 - leaf
PO:0009066 - anther
PO:0009039 - glume
PO:0009005 - root
Os01g0164800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g07110.1
RAD51C OsRAD51C
OsRad51C
RAD51C-1
RAD51C-2
RAD51C-3
 DNA REPAIR PROTEIN RAD51C DNA repair protein RAD51C
Radiation sensitive51C
Radiation sensitive 51C
 1 Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Biochemical character
 GO:0006302 - double-strand break repair
GO:0007131 - reciprocal meiotic recombination
GO:0045003 - double-strand break repair via synthesis-dependent strand annealing
GO:0016444 - somatic cell DNA recombination
GO:0008094 - DNA-dependent ATPase activity
GO:0045002 - double-strand break repair via single-strand annealing
GO:0005524 - ATP binding
GO:0005694 - chromosome
GO:0000706 - meiotic DNA double-strand break processing
GO:0007143 - female meiosis
GO:0007140 - male meiosis
GO:0000724 - double-strand break repair via homologous recombination
GO:0003677 - DNA binding
GO:0010332 - response to gamma radiation
 TO:0000161 - radiation response trait
 Os01g0578000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g39630.2
LOC_Os01g39630.1
APC6 OsAPC6
 ANAPHASE PROMOTING COMPLEX 6 Oryza sativa anaphase-promoting complex 6
anaphase-promoting complex 6
anaphase promoting complex/Cyclosome subunit APC6
 3 Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0000278 - mitotic cell cycle
GO:0009553 - embryo sac development
GO:0032875 - regulation of DNA endoreduplication
GO:0010087 - phloem or xylem histogenesis
GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process
GO:0043067 - regulation of programmed cell death
 TO:0000207 - plant height
TO:0000455 - seed set percent
 Os03g0236900/Os03g0236966 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g13370.1
MPK6 OsMPK6
OsDR6
DR6
OsMPK4
MPK4
OsMAPK4
MAPK4
 MITOGEN-ACTIVATED PROTEIN KINASE 6 mitogen-activated protein kinase 6
MAP kinase 4
 10 Seed
Tolerance and resistance
Reproductive organ - panicle
Vegetative organ - Culm
Biochemical character
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0009553 - embryo sac development
GO:0042542 - response to hydrogen peroxide
GO:0048316 - seed development
GO:0005634 - nucleus
GO:0006972 - hyperosmotic response
GO:0009620 - response to fungus
GO:0000165 - MAPKKK cascade
GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance
GO:0009734 - auxin mediated signaling pathway
GO:0005737 - cytoplasm
GO:0004707 - MAP kinase activity
GO:0009409 - response to cold
GO:0002213 - defense response to insect
GO:0009611 - response to wounding
GO:0009737 - response to abscisic acid stimulus
GO:0043069 - negative regulation of programmed cell death
GO:0031348 - negative regulation of defense response
GO:0009416 - response to light stimulus
GO:0002237 - response to molecule of bacterial origin
GO:0002238 - response to molecule of fungal origin
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009863 - salicylic acid mediated signaling pathway
GO:0009411 - response to UV
GO:0051302 - regulation of cell division
GO:0009414 - response to water deprivation
GO:0043622 - cortical microtubule organization
GO:0009651 - response to salt stress
GO:0050832 - defense response to fungus
GO:0080026 - response to indolebutyric acid stimulus
GO:0042539 - hypotonic salinity response
GO:0007292 - female gamete generation
GO:0042742 - defense response to bacterium
GO:0051726 - regulation of cell cycle
GO:0042127 - regulation of cell proliferation
GO:0005524 - ATP binding
GO:0009751 - response to salicylic acid stimulus
GO:0007097 - nuclear migration
 TO:0000371 - yield trait
TO:0000163 - auxin sensitivity
TO:0000074 - blast disease
TO:0000447 - filled grain number
TO:0000113 - giant embryo
TO:0000100 - shrunken endosperm
TO:0000454 - stem borer resistance
TO:0000231 - endospermless
TO:0000063 - mimic response
TO:0000175 - bacterial blight disease resistance
TO:0002759 - grain number
TO:0002668 - jasmonic acid content
TO:0000420 - fertility related trait
TO:0000040 - panicle length
TO:0000382 - 1000-seed weight
TO:0000152 - panicle number
TO:0000358 - female sterility
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000075 - light sensitivity
TO:0000303 - cold tolerance
TO:0000455 - seed set percent
TO:0000207 - plant height
TO:0000160 - UV light sensitivity
TO:0000357 - growth and development trait
TO:0000605 - hydrogen peroxide content
 PO:0001170 - seed development stage
PO:0009005 - root
PO:0025034 - leaf
PO:0020104 - leaf sheath
PO:0028003 - gametophyte development stage
Os10g0533600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g38950.1
NDL1 ERF79
OsERF#079
OsERF079
OsERF79
AP2/EREBP#017
AP2/EREBP17
OsNDL1
DSP
OsDSP
 NARROW AND DWARF LEAF 1 ethylene response factor 79
APETALA2/ethylene-responsive element binding protein 17
defective stigma and panicle
 2 Vegetative organ - Shoot apical meristem(SAM)
Other
Vegetative organ - Culm
Reproductive organ - Inflorescence
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Leaf
 GO:0010229 - inflorescence development
GO:0005634 - nucleus
GO:0048437 - floral organ development
GO:0003700 - transcription factor activity
GO:0010223 - secondary shoot formation
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009733 - response to auxin stimulus
GO:0009926 - auxin polar transport
GO:0006351 - transcription, DNA-dependent
GO:0010492 - maintenance of shoot apical meristem identity
GO:0009734 - auxin mediated signaling pathway
GO:0008283 - cell proliferation
GO:0048366 - leaf development
GO:0003677 - DNA binding
GO:0048480 - stigma development
 TO:0000456 - spikelet number
TO:0006016 - meristem tissue development trait
TO:0006038 - floral organ number
TO:0000630 - pedicel length
TO:0000346 - tiller number
TO:0000358 - female sterility
TO:0006022 - floral organ development trait
TO:0000050 - inflorescence branching
TO:0000455 - seed set percent
TO:0006020 - shoot apical meristem development
TO:0000655 - leaf development trait
TO:0000329 - tillering ability
TO:0000621 - inflorescence development trait
TO:0000163 - auxin sensitivity
 PO:0001050 - leaf development stage
PO:0001083 - inflorescence development stage
PO:0009049 - inflorescence
PO:0025127 - primordium
PO:0025477 - floral organ primordium
PO:0020148 - shoot apical meristem
PO:0009013 - portion of meristem tissue
PO:0006327 - spikelet meristem
PO:0009066 - anther
PO:0009072 - plant ovary
PO:0009073 - stigma
PO:0000017 - vascular leaf primordium
Os02g0594300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g38090.1
qESA-6 (esa-1) qESA-6 (esa-1)
 embryo-sac abortion (QTL)-6 embryo-sac abortion (QTL)-6
 6 Reproductive organ - Pollination, fertilization, fertility - Female sterility
 -
qESA-12-1 (esa-2) qESA-12-1 (esa-2)
 embryo-sac abortion (QTL)-12-1 embryo-sac abortion (QTL)-12-1
 12 Reproductive organ - Pollination, fertilization, fertility - Female sterility
 -
qESA-12-2 (esa-3) qESA-12-2 (esa-3)
 embryo-sac abortion (QTL)-12-2 embryo-sac abortion (QTL)-12-2
 12 Reproductive organ - Pollination, fertilization, fertility - Female sterility
 -
FST OsMADS29
MADS29
OsFST
 FEMALE-STERILE MADS box gene29
MADS-box transcription factor 29
 2 Seed - Morphological traits - Endosperm
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Other
Seed
Reproductive organ - panicle
Character as QTL - Yield and productivity
Seed - Morphological traits - Embryo
 GO:0009790 - embryonic development
GO:0010581 - regulation of starch biosynthetic process
GO:0009755 - hormone-mediated signaling
GO:0009736 - cytokinin mediated signaling
GO:0010817 - regulation of hormone levels
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0009960 - endosperm development
GO:0003700 - transcription factor activity
GO:0009733 - response to auxin stimulus
GO:0009691 - cytokinin biosynthetic process
GO:0048481 - ovule development
GO:0010229 - inflorescence development
GO:0009660 - amyloplast organization
GO:0009657 - plastid organization
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0010252 - auxin homeostasis
GO:0010600 - regulation of auxin biosynthetic process
GO:0006350 - transcription
 TO:0002672 - auxin content
TO:0000653 - seed development trait
TO:0000476 - growth hormone content
TO:0002661 - seed maturation
TO:0000621 - inflorescence development trait
TO:0000620 - embryo development trait
TO:0002656 - starch grain shape
TO:0000391 - seed size
TO:0000455 - seed set percent
TO:0002658 - starch grain synthesis
TO:0002660 - cytokinin content
TO:0000207 - plant height
TO:0000163 - auxin sensitivity
TO:0000358 - female sterility
 PO:0009089 - endosperm
PO:0007631 - plant embryo stage
PO:0001083 - inflorescence development stage
PO:0005360 - aleurone layer
PO:0007619 - ovule development stage
PO:0009009 - plant embryo
PO:0001002 - fruit development stage
PO:0007633 - endosperm development stage
Os02g0170300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g07430.1
TFS2 HEI10
HEI10A
HEI10B
OsHEI10
OsRING434
RING434
 THERMO-SENSITIVE FEMALE STERILITY 2 ZMM protein HEI10
human enhancer of invasion 10
Human enhancer of invasion10
RING-type E3 ubiquitin ligase 434
shorter hei10 1
 2 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0009266 - response to temperature stimulus
GO:0008270 - zinc ion binding
GO:0005634 - nucleus
GO:0009555 - pollen development
GO:0009556 - microsporogenesis
GO:0009553 - embryo sac development
GO:0007126 - meiosis
GO:0005694 - chromosome
GO:0005712 - chiasma
GO:0007129 - synapsis
GO:0007131 - reciprocal meiotic recombination
GO:0016567 - protein ubiquitination
GO:0051026 - chiasma formation
GO:0016740 - transferase activity
GO:0046872 - metal ion binding
GO:0048440 - carpel development
GO:0009408 - response to heat
 TO:0000437 - male sterility
TO:0000358 - female sterility
TO:0000053 - pollen sterility
TO:0000416 - embryosac abortion
TO:0000455 - seed set percent
TO:0000245 - pollen free
TO:0002659 - pistil number
TO:0000067 - genic male sterility-thermo sensitive
TO:0000259 - heat tolerance
TO:0000432 - temperature response trait
 PO:0001007 - pollen development stage
Os02g0232100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g13810.2
LOC_Os02g13810.1
TAB1 Os WUS
WUS
OsWOX1
WOX1
OsWUS
OsTAB
TAB1/WUS
MOC3
OsMOC3
MOC3/OsWUS
SRT1
MOC3/TAB1/SRT1
DC1
OsDC1
DAP1
OsDAP1
 TILLERS ABSENT 1 WUSCHEL
WUSCHEL-related homeobox 1
WUSCHEL-LIKE HOMEOBOX 1
WUS Orthologue
TILLERS ABSENT1
MONOCULM 3
completely sterile and reduced tillering 1
decreased culm number 1
Dwarf and aberrant panicle 1
 4 Other
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Tolerance and resistance - Stress tolerance
 GO:0009735 - response to cytokinin stimulus
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0019954 - asexual reproduction
GO:0010229 - inflorescence development
GO:0048507 - meristem development
GO:0009414 - response to water deprivation
GO:0043565 - sequence-specific DNA binding
GO:0006351 - transcription, DNA-dependent
GO:0007275 - multicellular organismal development
GO:0009733 - response to auxin stimulus
 TO:0000447 - filled grain number
TO:0000358 - female sterility
TO:0000346 - tiller number
TO:0000040 - panicle length
TO:0000207 - plant height
TO:0000657 - spikelet anatomy and morphology trait
TO:0000661 - tiller bud dormancy
TO:0000223 - pistil anatomy and morphology trait
TO:0000215 - stamen anatomy and morphology trait
TO:0000276 - drought tolerance
TO:0000436 - spikelet sterility
TO:0000621 - inflorescence development trait
TO:0000329 - tillering ability
TO:0002660 - cytokinin content
TO:0000152 - panicle number
TO:0000180 - spikelet fertility
TO:0000557 - secondary branch number
TO:0000456 - spikelet number
TO:0000163 - auxin sensitivity
 PO:0001083 - inflorescence development stage
PO:0007073 - 2 formation of axillary shoot stage
Os04g0663600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g56780.1
MIR390 OsmiR390
miR390
osa-MIR390osa-miR390
osa-miR390-3p
osa-miR390-5p
 MICRORNA390 rice microRNA390
 3 Seed - Physiological traits - Dormancy
Other
Tolerance and resistance - Disease resistance
Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Tolerance and resistance - Stress tolerance
 GO:0035195 - gene silencing by miRNA
GO:0046688 - response to copper ion
GO:0009414 - response to water deprivation
GO:0042742 - defense response to bacterium
GO:0009733 - response to auxin stimulus
GO:0010311 - lateral root formation
GO:0010162 - seed dormancy
GO:0009266 - response to temperature stimulus
GO:0035068 - micro-ribonucleoprotein complex
GO:0046686 - response to cadmium ion
GO:0016442 - RNA-induced silencing complex
GO:0009409 - response to cold
GO:0009408 - response to heat
GO:0006379 - mRNA cleavage
GO:0009737 - response to abscisic acid stimulus
GO:0030422 - production of siRNA involved in RNA interference
GO:0009651 - response to salt stress
GO:0009411 - response to UV
 TO:0000276 - drought tolerance
TO:0000021 - copper sensitivity
TO:0000160 - UV light sensitivity
TO:0006001 - salt tolerance
TO:0000253 - seed dormancy
TO:0000303 - cold tolerance
TO:0000358 - female sterility
TO:0000259 - heat tolerance
TO:0000163 - auxin sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000315 - bacterial disease resistance
 PO:0000025 - root tip
PO:0005029 - root primordium
PO:0020121 - lateral root
-
MIR2118B miR2118b
osa-miR2118b
osa-MIR2118b
 MICRORNA2118B MICRORNA2118b
osa-miRNA2118b
 4 Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Other
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0016442 - RNA-induced silencing complex
GO:0048653 - anther development
GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0006379 - mRNA cleavage
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118C miR2118c
osa-miR2118c
osa-MIR2118c
 MICRORNA2118C MICRORNA2118c
osa-miRNA2118c
 4 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Other
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
 GO:0048653 - anther development
GO:0035195 - gene silencing by miRNA
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
 TO:0000358 - female sterility
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
MIR2118D miR2118d
osa-miR2118d
osa-MIR2118d
 MICRORNA2118D MICRORNA2118d
osa-miRNA2118d
 4 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Other
 GO:0035195 - gene silencing by miRNA
GO:0048653 - anther development
GO:0035068 - micro-ribonucleoprotein complex
GO:0016442 - RNA-induced silencing complex
GO:0006379 - mRNA cleavage
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118E miR2118e
osa-miR2118e
osa-MIR2118e
 MICRORNA2118E MICRORNA2118e
osa-miRNA2118e
 4 Other
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
 GO:0035195 - gene silencing by miRNA
GO:0048653 - anther development
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118F miR2118f
osa-miR2118f
osa-MIR2118f
 MICRORNA2118F MICRORNA2118f
osa-miRNA2118f
 4 Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
Other
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0035195 - gene silencing by miRNA
GO:0010229 - inflorescence development
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
GO:0006379 - mRNA cleavage
GO:0048653 - anther development
GO:0048232 - male gamete generation
GO:0009908 - flower development
 TO:0000437 - male sterility
TO:0000622 - flower development trait
TO:0000621 - inflorescence development trait
TO:0000358 - female sterility
 PO:0001004 - anther development stage
PO:0009029 - stamen
PO:0025277 - pollen sac
PO:0005679 - epidermis
PO:0007615 - flower development stage
PO:0006327 - spikelet meristem
PO:0001083 - inflorescence development stage
PO:0005051 - hypodermis
-
MIR2118G miR2118g
osa-miR2118g
osa-MIR2118g
 MICRORNA2118G MICRORNA2118g
osa-miRNA2118g
 4 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Other
Reproductive organ - Spikelet, flower, glume, awn
 GO:0006379 - mRNA cleavage
GO:0048653 - anther development
GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0016442 - RNA-induced silencing complex
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118H miR2118h
osa-miR2118h
osa-MIR2118h
 MICRORNA2118H MICRORNA2118h
osa-miRNA2118h
 4 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Other
 GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0048653 - anther development
GO:0035068 - micro-ribonucleoprotein complex
GO:0035195 - gene silencing by miRNA
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118I miR2118i
osa-miR2118i
osa-MIR2118i
 MICRORNA2118I MICRORNA2118i
osa-miRNA2118i
 4 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Other
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
 GO:0048653 - anther development
GO:0035068 - micro-ribonucleoprotein complex
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035195 - gene silencing by miRNA
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118J miR2118j
osa-miR2118j
osa-MIR2118j
 MICRORNA2118J MICRORNA2118j
osa-miRNA2118j
 4 Reproductive organ - Spikelet, flower, glume, awn
Other
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0016442 - RNA-induced silencing complex
GO:0006379 - mRNA cleavage
GO:0048653 - anther development
 TO:0000358 - female sterility
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
MIR2118K miR2118k
osa-miR2118k
osa-MIR2118k
 MICRORNA2118K MICRORNA2118k
osa-miRNA2118k
 4 Other
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
 GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0016442 - RNA-induced silencing complex
GO:0006379 - mRNA cleavage
GO:0048653 - anther development
 TO:0000437 - male sterility
TO:0000358 - female sterility
 PO:0001004 - anther development stage
-
MIR2118L miR2118l
osa-miR2118l
osa-MIR2118l
 MICRORNA2118L MICRORNA2118l
osa-miRNA2118l
 4 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Other
Tolerance and resistance - Disease resistance
 GO:0048653 - anther development
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
GO:0006379 - mRNA cleavage
GO:0050832 - defense response to fungus
GO:0035195 - gene silencing by miRNA
 TO:0000358 - female sterility
TO:0000074 - blast disease
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
MIR2118M miR2118m
osa-miR2118m
osa-MIR2118m
 MICRORNA2118M MICRORNA2118m
osa-miRNA2118m
 4 Other
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
 GO:0048653 - anther development
GO:0035195 - gene silencing by miRNA
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035068 - micro-ribonucleoprotein complex
 TO:0000358 - female sterility
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
MIR2118N miR2118n
osa-miR2118n
osa-MIR2118n
 MICRORNA2118N MICRORNA2118n
osa-miRNA2118n
 4 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Other
 GO:0035068 - micro-ribonucleoprotein complex
GO:0048653 - anther development
GO:0006379 - mRNA cleavage
GO:0016442 - RNA-induced silencing complex
GO:0035195 - gene silencing by miRNA
 TO:0000358 - female sterility
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
MIR2118O miR2118o
osa-miR2118o
osa-MIR2118o
 MICRORNA2118O MICRORNA2118o
osa-miRNA2118o
 4 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Disease resistance
Other
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0016442 - RNA-induced silencing complex
GO:0006379 - mRNA cleavage
GO:0050832 - defense response to fungus
GO:0048653 - anther development
 TO:0000358 - female sterility
TO:0000074 - blast disease
TO:0000437 - male sterility
 PO:0001004 - anther development stage
-
ESD1 OsOFP31
OsOFP26
OFP31
OFP26
OsSTA245
Os ESD1
 EMBRYO SAC DEVELOPMENT 1 OVATE family protein 31
ovate family protein 26
OVATE-domain containing protein 26
Embryo Sac Development 1
 10 Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0010229 - inflorescence development
GO:0005634 - nucleus
GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process
GO:0009553 - embryo sac development
GO:0003700 - transcription factor activity
GO:0005737 - cytoplasm
 TO:0000449 - grain yield per plant
TO:0000621 - inflorescence development trait
TO:0000180 - spikelet fertility
TO:0000358 - female sterility
TO:0000455 - seed set percent
TO:0000223 - pistil anatomy and morphology trait
 PO:0001083 - inflorescence development stage
PO:0020003 - plant ovule
PO:0005052 - plant callus
PO:0009066 - anther
Os10g0431700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g29610.1
PARP1 OsPARP1
PARP
OsPARP1.1
OsPARP1.2
 POLY(ADP-RIBOSE) POLYMERASE 1 poly(ADP-ribose) polymerase 1
Poly ADP-ribose polymerase-1
 7 Reproductive organ - Pollination, fertilization, fertility - Meiosis
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0009555 - pollen development
GO:0006284 - base-excision repair
GO:0005634 - nucleus
GO:0051287 - NAD or NADH binding
GO:0005737 - cytoplasm
GO:0008270 - zinc ion binding
GO:0051103 - DNA ligation during DNA repair
GO:0006471 - protein amino acid ADP-ribosylation
GO:0006273 - lagging strand elongation
GO:0003950 - NAD+ ADP-ribosyltransferase activity
GO:0003910 - DNA ligase (ATP) activity
GO:0048229 - gametophyte development
GO:0051321 - meiotic cell cycle
GO:0051446 - positive regulation of meiotic cell cycle
GO:0006974 - response to DNA damage stimulus
GO:0006260 - DNA replication
GO:0006281 - DNA repair
GO:0003677 - DNA binding
GO:0009908 - flower development
GO:0070213 - protein amino acid auto-ADP-ribosylation
GO:0010029 - regulation of seed germination
GO:0009553 - embryo sac development
 TO:0000396 - grain yield
TO:0000437 - male sterility
TO:0000358 - female sterility
TO:0000455 - seed set percent
TO:0000622 - flower development trait
 PO:0007615 - flower development stage
PO:0009029 - stamen
PO:0028003 - gametophyte development stage
PO:0004705 - stamen primordium
PO:0009049 - inflorescence
PO:0025477 - floral organ primordium
PO:0009030 - carpel
PO:0001009 - D pollen mother cell meiosis stage
PO:0025281 - pollen
PO:0009005 - root
PO:0025034 - leaf
PO:0009047 - stem
Os07g0413700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g23110.1
P31COMET P31comet
OsBVF1
BVF1
 _ Bivalent Formation 1
 5 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
 GO:0000706 - meiotic DNA double-strand break processing
GO:0007133 - meiotic anaphase I
GO:0042138 - meiotic DNA double-strand break formation
GO:0045132 - meiotic chromosome segregation
GO:0000795 - synaptonemal complex
GO:0000241 - diakinesis
GO:0000712 - resolution of meiotic joint molecules as recombinants
GO:0005634 - nucleus
GO:0007129 - synapsis
GO:0070193 - synaptonemal complex organization
GO:0007131 - reciprocal meiotic recombination
 TO:0000485 - sterility related trait
TO:0000180 - spikelet fertility
 PO:0009066 - anther
Os05g0251400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g16250.1
DSNP1 OsCLR1
CLR1
OsDSNP1
OsRING318
RING318
OsC3HC4_067
C3HC4_067
 DESYNAPSIS 1 cytoplasmic-localized RING finger protein 1
cytosol-localized RING finger protein 1
DESYNAPSIS1
RING-type E3 ubiquitin ligase 318
C3HC4-type RING zinc finger protein 067
 6 Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Tolerance and resistance - Stress tolerance
 GO:0016567 - protein ubiquitination
GO:0051321 - meiotic cell cycle
GO:0008270 - zinc ion binding
GO:0009414 - response to water deprivation
GO:0007130 - synaptonemal complex assembly
GO:0009651 - response to salt stress
GO:0005829 - cytosol
GO:0009738 - abscisic acid mediated signaling
GO:0007129 - synapsis
GO:0009737 - response to abscisic acid stimulus
 TO:0000437 - male sterility
TO:0000276 - drought tolerance
TO:0000358 - female sterility
TO:0000218 - pollen abortion type
TO:0006001 - salt tolerance
TO:0000430 - germination rate
 Os06g0633500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g42700.1
ESA1 OsESA1
 EMBRYO SAC ABORTION 1 1 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0016021 - integral to membrane
GO:0000278 - mitotic cell cycle
 TO:0000180 - spikelet fertility
TO:0000036 - hybrid incompatibility
TO:0000358 - female sterility
 Os01g0524100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g34010.1
PRD2 OsPRD2
OsPRD2/MPS1
OsMPS1
MPS1
 PUTATIVE RECOMBINATION INITIATION DEFECT 2 MULTIPOLAR SPINDLE 1
 8 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0007140 - male meiosis
GO:0051321 - meiotic cell cycle
GO:0000212 - meiotic spindle organization
GO:0007059 - chromosome segregation
GO:0042138 - meiotic DNA double-strand break formation
 TO:0000358 - female sterility
TO:0000729 - meiotic cell cycle trait
TO:0000437 - male sterility
 Os08g0555800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g44180.1
AGG1 OsHEIP1
HEIP1
OsAGG1
OsAGG1.1
OsAGG1.2
 ABERRANT GAMETOGENESIS 1 HEI10 Interaction Protein 1
 1 Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0010520 - regulation of reciprocal meiotic recombination
GO:0007292 - female gamete generation
GO:0048232 - male gamete generation
GO:0051026 - chiasma formation
GO:0009556 - microsporogenesis
GO:0009555 - pollen development
GO:0009553 - embryo sac development
GO:0009554 - megasporogenesis
GO:0005634 - nucleus
GO:0051321 - meiotic cell cycle
 TO:0000421 - pollen fertility
TO:0000455 - seed set percent
TO:0000358 - female sterility
TO:0000437 - male sterility
 PO:0001004 - anther development stage
PO:0001007 - pollen development stage
PO:0009066 - anther
PO:0009030 - carpel
Os01g0167700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g07330.1
LOC_Os01g07330.2
LOC_Os01g07330.3
LOC_Os01g07330.4
SUN1 OsSUN1
OsSUN2
SUN2
 SUN DOMAIN-CONTAINING PROTEIN 1 SUN (Sad1/UNC-84) domain-containing protein 1
SUN domain-containing protein 1
SUN protein 1
SUN Domain Protein 2
 1 Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Female sterility
 GO:0006998 - nuclear envelope organization
GO:0009737 - response to abscisic acid stimulus
GO:0043495 - protein anchor
GO:0051321 - meiotic cell cycle
GO:0009651 - response to salt stress
GO:0045141 - meiotic telomere clustering
GO:0005635 - nuclear envelope
GO:0007129 - synapsis
GO:0009408 - response to heat
 TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000259 - heat tolerance
 Os01g0267600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g16220.1
ETFBETA ETFbeta
OsETFbeta
 ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA Electron transfer flavoprotein subunit
ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT Beta
ETF subunit Beta
 4 Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
 GO:0009556 - microsporogenesis
GO:0019740 - nitrogen utilization
GO:0009083 - branched chain family amino acid catabolic process
GO:0015996 - chlorophyll catabolic process
GO:0007140 - male meiosis
GO:0009055 - electron carrier activity
GO:0006552 - leucine catabolic process
GO:0009554 - megasporogenesis
GO:0051321 - meiotic cell cycle
GO:0005759 - mitochondrial matrix
GO:0006995 - cellular response to nitrogen starvation
GO:0055114 - oxidation reduction
GO:0048657 - tapetal cell differentiation
GO:0019243 - methylglyoxal catabolic process to D-lactate
GO:0048653 - anther development
GO:0007143 - female meiosis
 TO:0000245 - pollen free
TO:0000421 - pollen fertility
TO:0000485 - sterility related trait
TO:0000011 - nitrogen sensitivity
TO:0000350 - cms-hl type
TO:0000437 - male sterility
TO:0000420 - fertility related trait
TO:0002673 - amino acid content
 PO:0006010 - primary parietal cell
PO:0009066 - anther
PO:0030056 - archesporial cell
PO:0001004 - anther development stage
Os04g0182800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g10400.1
RLCK85 OsRLCK85
OsER2
ER2
 RECEPTOR-LIKE CYTOPLASMIC KINASE 85 Receptor-like Cytoplasmic Kinase 85
ERECTA 2
OsERECTA2
 2 Seed
Vegetative organ - Culm
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - panicle
 GO:0042127 - regulation of cell proliferation
GO:0001558 - regulation of cell growth
GO:0004674 - protein serine/threonine kinase activity
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0048229 - gametophyte development
GO:0010229 - inflorescence development
GO:0005524 - ATP binding
GO:0009553 - embryo sac development
GO:0009554 - megasporogenesis
GO:0048316 - seed development
GO:0022414 - reproductive process
 TO:0000276 - drought tolerance
TO:0000358 - female sterility
TO:0000455 - seed set percent
TO:0006032 - panicle size
TO:0000207 - plant height
TO:0006001 - salt tolerance
TO:0000180 - spikelet fertility
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
 PO:0020003 - plant ovule
PO:0009010 - seed
PO:0000084 - plant sperm cell
PO:0009049 - inflorescence
PO:0001170 - seed development stage
PO:0009047 - stem
PO:0009006 - shoot system
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009029 - stamen
PO:0007041 - inflorescence emergence stage
PO:0028003 - gametophyte development stage
PO:0001083 - inflorescence development stage
Os02g0777400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g53720.1
LOC_Os02g53720.2
MEKK2 MAPK
MAPK6
OsMEKK2
 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 2 Mitogen-activated protein kinase 6
Mitogen-activated protein kinase kinase kinase 2
MAP kinase kinase kinase 2
 9 Reproductive organ - Pollination, fertilization, fertility - Female sterility
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
 GO:0005524 - ATP binding
GO:0007292 - female gamete generation
GO:0009566 - fertilization
GO:0004674 - protein serine/threonine kinase activity
GO:0007097 - nuclear migration
GO:0009553 - embryo sac development
 TO:0000455 - seed set percent
TO:0000358 - female sterility
TO:0000258 - leaf thickness
 PO:0009038 - palea
PO:0009030 - carpel
PO:0009029 - stamen
PO:0009037 - lemma
PO:0020103 - flag leaf
Os09g0383300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g21510.1
NRFG4 OsRH52A
RH52A
OsNRFG4
 NEO-TETRAPLOID RICE FERTILITY RELATED GENE 4 RNA helicase 52A
neo-tetraploid rice fertility related gene 4
 6 Reproductive organ - panicle
Vegetative organ - Culm
Seed - Morphological traits
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ
Reproductive organ - Pollination, fertilization, fertility
 GO:0048314 - embryo sac morphogenesis
GO:0003723 - RNA binding
GO:0005634 - nucleus
GO:0007292 - female gamete generation
GO:0009553 - embryo sac development
GO:0004386 - helicase activity
GO:0005524 - ATP binding
GO:0005737 - cytoplasm
 TO:0000455 - seed set percent
TO:0000358 - female sterility
TO:0000447 - filled grain number
TO:0000421 - pollen fertility
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000207 - plant height
TO:0000371 - yield trait
TO:0000592 - 1000-dehulled grain weight
 PO:0007621 - megagametophyte development stage
PO:0020094 - plant egg cell
PO:0025395 - floral organ
PO:0009072 - plant ovary
Os06g0602400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40020.1
DES1 OsDES1
 DEFECTIVE EMBRYO SAC 1 defective embryo sac1
 3 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Pollination, fertilization, fertility
 GO:0009736 - cytokinin mediated signaling
GO:0048608 - reproductive structure development
GO:0009566 - fertilization
GO:0005737 - cytoplasm
GO:0005886 - plasma membrane
GO:0000278 - mitotic cell cycle
GO:0048443 - stamen development
GO:0005637 - nuclear inner membrane
GO:0048573 - photoperiodism, flowering
GO:0005634 - nucleus
GO:0009860 - pollen tube growth
GO:0009846 - pollen germination
GO:0009555 - pollen development
GO:0048658 - tapetal layer development
GO:0009553 - embryo sac development
GO:0048437 - floral organ development
 TO:0000180 - spikelet fertility
TO:0000620 - embryo development trait
TO:0002660 - cytokinin content
TO:0006022 - floral organ development trait
TO:0000218 - pollen abortion type
TO:0002609 - stamen length
TO:0000358 - female sterility
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0000040 - panicle length
TO:0000201 - panicle color
TO:0000225 - stamen number
TO:0000421 - pollen fertility
TO:0000455 - seed set percent
TO:0000207 - plant height
 PO:0025585 - floral organ formation stage
PO:0020003 - plant ovule
PO:0009030 - carpel
PO:0020023 - outer integument
PO:0007631 - plant embryo stage
PO:0025530 - reproductive shoot system development stage
PO:0009066 - anther
PO:0025074 - embryo sac
PO:0020022 - inner integument
PO:0001004 - anther development stage
PO:0001007 - pollen development stage
Os03g0430000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g31570.1
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