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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
RA2 ra2
Osra2
OsCrll4
CRL1L4
CRLL4
OsRA2
OsLBD13
LBD13
 RAMOSA 2 ramosa2
ra2 ortholog
Crl1-like 4
OsRAMOSA2
OsRAMOSA 2
Lateral Organ Boundaries Domain protein 13
 1 Other
Reproductive organ - Inflorescence
 GO:0001709 - cell fate determination
GO:0010229 - inflorescence development
GO:0005634 - nucleus
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0003700 - transcription factor activity
GO:0010199 - organ boundary specification between lateral organs and the meristem
 TO:0000557 - secondary branch number
TO:0000184 - seed anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0000630 - pedicel length
 PO:0001083 - inflorescence development stage
PO:0006327 - spikelet meristem
PO:0009049 - inflorescence
PO:0009030 - carpel
PO:0009105 - inflorescence branch meristem
Os01g0169400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g07480.2
LOC_Os01g07480.1
CDPK2 OsCDPK2
OsCPK2
CPK2
 CALCIUM-DEPENDENT PROTEIN KINASE 2 calcium-dependent protein kinase
 1 Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Reproductive organ - Inflorescence
 GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005886 - plasma membrane
GO:0009414 - response to water deprivation
GO:0005737 - cytoplasm
GO:0080092 - regulation of pollen tube growth
 TO:0000276 - drought tolerance
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os01g0808400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g59360.1
CDPK14 OsCDPK14
OsCPK14
CPK14
 CALCIUM-DEPENDENT PROTEIN KINASE 14 calcium-dependent protein kinase
 5 Tolerance and resistance - Stress tolerance
Reproductive organ - Inflorescence
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
 GO:0009414 - response to water deprivation
GO:0010857 - calcium-dependent protein kinase activity
 TO:0000276 - drought tolerance
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os05g0491900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41270.1
CDPK22 OsCDPK22
OsCPK22
CPK22
 CALCIUM-DEPENDENT PROTEIN KINASE 22 calcium-dependent protein kinase
 9 Biochemical character
Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0009414 - response to water deprivation
GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
 TO:0000276 - drought tolerance
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os09g0514200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g33910.1
CDPK25 OsCDPK25
OsCPK25
CPK25
 CALCIUM-DEPENDENT PROTEIN KINASE 25 calcium-dependent protein kinase
 11 Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0005737 - cytoplasm
GO:0009414 - response to water deprivation
GO:0010857 - calcium-dependent protein kinase activity
GO:0031000 - response to caffeine
GO:0005886 - plasma membrane
GO:0080092 - regulation of pollen tube growth
GO:0004674 - protein serine/threonine kinase activity
 TO:0000276 - drought tolerance
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os11g0136600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g04170.1
CDPK26 OsCDPK26
OsCPK26
CPK26
 CALCIUM-DEPENDENT PROTEIN KINASE 26 calcium-dependent protein kinase
 12 Biochemical character
Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
 GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0010857 - calcium-dependent protein kinase activity
GO:0031000 - response to caffeine
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os12g0133500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g03970.1
CDPK27 OsCDPK27
OsCPK27
CPK27
 CALCIUM-DEPENDENT PROTEIN KINASE 27 calcium-dependent protein kinase
 12 Reproductive organ - Inflorescence
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
 GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os12g0486600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g30150.1
CDPK29 OsCDPK29
OsCPK29
 CALCIUM-DEPENDENT PROTEIN KINASE 29 calcium-dependent protein kinase
 12 Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os12g0230200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g12860.1
PAL1 HK4
OHK4
HK
OsHK4
Crl1b
Ohk4
OHK4/OsHK4
OsPAL1
 PANICLE LENGTH 1 histidine kinase 4
His kinase 4
panicle length1
 3 Reproductive organ - Inflorescence
Biochemical character
Reproductive organ - panicle
Character as QTL - Plant growth activity
 GO:0009735 - response to cytokinin stimulus
GO:0000155 - two-component sensor activity
GO:0009736 - cytokinin mediated signaling
GO:0010081 - regulation of inflorescence meristem growth
GO:0009823 - cytokinin catabolic process
GO:0009691 - cytokinin biosynthetic process
GO:0000156 - two-component response regulator activity
GO:0004673 - protein histidine kinase activity
GO:0005524 - ATP binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005886 - plasma membrane
GO:0009884 - cytokinin receptor activity
GO:0010075 - regulation of meristem growth
GO:0010229 - inflorescence development
GO:0005783 - endoplasmic reticulum
GO:0080037 - negative regulation of cytokinin mediated signaling
GO:0016020 - membrane
GO:0018106 - peptidyl-histidine phosphorylation
 TO:0000040 - panicle length
TO:0002757 - flag leaf length
TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000447 - filled grain number
TO:0000096 - ratooning ability
TO:0000557 - secondary branch number
TO:0006032 - panicle size
TO:0006031 - inflorescence size
TO:0002660 - cytokinin content
TO:0000621 - inflorescence development trait
TO:0000132 - basal internode diameter
TO:0002758 - flag leaf lamina width
TO:0000167 - cytokinin sensitivity
TO:0000547 - primary branch number
 PO:0001083 - inflorescence development stage
PO:0004709 - axillary bud
Os03g0717700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g50860.1
RR21 OsRR21
Rrb1
Orr1
OsRR19
RR19
OsRRB1
ORR1
OsRRB4
RRB4
 B-TYPE RESPONSE REGULATOR 1 B-type response regulator 1
B-type RR 1
ORYZA SATIVA RESPONSE REGULATOR 1
 3 Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
Reproductive organ - panicle
Heterochrony
Vegetative organ - Root
 GO:0010229 - inflorescence development
GO:0009737 - response to abscisic acid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009735 - response to cytokinin stimulus
GO:0045449 - regulation of transcription
GO:0009414 - response to water deprivation
GO:0009723 - response to ethylene stimulus
GO:0009736 - cytokinin mediated signaling
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0000156 - two-component response regulator activity
GO:0009409 - response to cold
GO:0005634 - nucleus
 TO:0000173 - ethylene sensitivity
TO:0000040 - panicle length
TO:0006031 - inflorescence size
TO:0000276 - drought tolerance
TO:0000621 - inflorescence development trait
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000557 - secondary branch number
TO:0000172 - jasmonic acid sensitivity
TO:0000547 - primary branch number
 PO:0001083 - inflorescence development stage
PO:0009010 - seed
PO:0025034 - leaf
PO:0009006 - shoot system
PO:0009089 - endosperm
PO:0008037 - seedling
Os03g0224200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g12350.1
LOC_Os03g12350.2
LOC_Os03g12350.4
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Coloration - Chlorophyll
Other
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
Seed - Morphological traits
Vegetative organ - Culm
 GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009739 - response to gibberellin stimulus
GO:0009957 - epidermal cell fate specification
GO:0051510 - regulation of unidimensional cell growth
GO:0080006 - internode patterning
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0012501 - programmed cell death
GO:0042127 - regulation of cell proliferation
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0048437 - floral organ development
GO:0001558 - regulation of cell growth
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0048316 - seed development
 TO:0000085 - leaf rolling
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000587 - endosperm quality
TO:0000474 - glume opening
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0001006 - adventitious root number
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0002681 - leaf curling
TO:0001012 - lateral root length
TO:0000019 - seedling height
TO:0000657 - spikelet anatomy and morphology trait
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000598 - protein content
TO:0000196 - amylose content
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000382 - 1000-seed weight
TO:0000326 - leaf color
TO:0001027 - net photosynthetic rate
TO:0000135 - leaf length
TO:0000295 - chlorophyll-b content
TO:0002757 - flag leaf length
TO:0000370 - leaf width
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000053 - pollen sterility
TO:0000391 - seed size
TO:0000655 - leaf development trait
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0025426 - phloem development stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020141 - stem node
PO:0001004 - anther development stage
PO:0025585 - floral organ formation stage
PO:0007520 - root development stage
PO:0020142 - stem internode
PO:0000293 - guard cell
PO:0006019 - leaf abaxial epidermis
PO:0001050 - leaf development stage
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
DCL3A OsDCL3a
 DICER-LIKE 3A Endoribonuclease Dicer homolog 3a
Dicer-like protein 3a
 1 Vegetative organ - Leaf
Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Insect resistance
Reproductive organ - Inflorescence
Tolerance and resistance - Disease resistance
 GO:0005524 - ATP binding
GO:0005634 - nucleus
GO:0006396 - RNA processing
GO:0030145 - manganese ion binding
GO:0000287 - magnesium ion binding
GO:0031047 - gene silencing by RNA
GO:0003677 - DNA binding
GO:0004386 - helicase activity
GO:0004525 - ribonuclease III activity
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0003723 - RNA binding
GO:0002215 - defense response to nematode
GO:0009873 - ethylene mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0050832 - defense response to fungus
GO:0009627 - systemic acquired resistance
GO:0009723 - response to ethylene stimulus
 TO:0000557 - secondary branch number
TO:0000124 - flag leaf angle
TO:0000074 - blast disease
TO:0000207 - plant height
TO:0000173 - ethylene sensitivity
TO:0000384 - nematode damage resistance
TO:0002667 - abscisic acid content
TO:0000172 - jasmonic acid sensitivity
 Os01g0909200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g68120.1
RAG MADS3
OsMADS3
OsMADS3(t)
RMADS222
RAG1
rf3
 RICE AGAMOUS MADS box gene3
MADS-box transcription factor 3
Protein AGAMOUS-like
fertility restoration 3
 1 Other
Reproductive organ - Inflorescence
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
 GO:0048653 - anther development
GO:0010229 - inflorescence development
GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0009908 - flower development
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000622 - flower development trait
TO:0006009 - lodicule anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0000215 - stamen anatomy and morphology trait
TO:0006023 - lodicule development trait
 PO:0001004 - anther development stage
PO:0001049 - lodicule development stage
PO:0009036 - lodicule
PO:0007615 - flower development stage
PO:0001083 - inflorescence development stage
PO:0009029 - stamen
Os01g0201700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10504.3
LOC_Os01g10504.2
LOC_Os01g10504.1
ASA OsNIP3;1
NIP3;1
NIP3-1
OsNIP3.1
NIP3.1
OsASA
 APICAL SPIKELET ABORTION Aquaporin NIP3-1
NOD26-like intrinsic protein 3-1
nodulin 26-like intrinsic protein 3-1
apical spikelet abortion
 10 Reproductive organ - Inflorescence
Biochemical character
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility
Tolerance and resistance - Stress tolerance
 GO:0009556 - microsporogenesis
GO:0055085 - transmembrane transport
GO:0009536 - plastid
GO:0005215 - transporter activity
GO:0016020 - membrane
GO:0048656 - tapetal layer formation
GO:0010036 - response to boron
GO:0010229 - inflorescence development
GO:0080142 - regulation of salicylic acid biosynthetic process
GO:0009555 - pollen development
GO:0010337 - regulation of salicylic acid metabolic process
GO:0016021 - integral to membrane
 TO:0000657 - spikelet anatomy and morphology trait
TO:0006011 - lodicule shape
TO:0000210 - anther number
TO:0000187 - anther color
TO:0000214 - anther shape
TO:0000614 - lemma shape
TO:0000605 - hydrogen peroxide content
TO:0000421 - pollen fertility
TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
 PO:0005352 - xylem
PO:0000074 - parenchyma cell
PO:0001083 - inflorescence development stage
PO:0009053 - peduncle
PO:0009049 - inflorescence
PO:0009066 - anther
PO:0001007 - pollen development stage
PO:0005004 - shoot node
Os10g0513200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g36924.1
KNAT7 HOS66
HB365
OsKNAT7
 KNOTTED ARABIDOPSIS THALIANA 7 HOMEOBOX ORYZA SATIVA 66
Homeobox protein knotted-1-like 3
Homeobox protein HOS66
KNOTTED ARABIDOPSIS THALIANA7
KNOX ARABIDOPSIS THALIANA7
 3 Tolerance and resistance - Stress tolerance
Other
Reproductive organ - Inflorescence
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0030244 - cellulose biosynthetic process
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009834 - secondary cell wall biogenesis
GO:0052386 - cell wall thickening
GO:0003700 - transcription factor activity
GO:0043565 - sequence-specific DNA binding
GO:0080006 - internode patterning
GO:0010229 - inflorescence development
GO:0009664 - plant-type cell wall organization
GO:0001558 - regulation of cell growth
GO:0009809 - lignin biosynthetic process
GO:0030308 - negative regulation of cell growth
GO:0005634 - nucleus
 TO:0000068 - lodging incidence
TO:0000051 - stem strength
TO:0000621 - inflorescence development trait
TO:0000731 - lignin content
TO:0000397 - grain size
 PO:0001083 - inflorescence development stage
Os03g0123500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03164.3
LOC_Os03g03164.2
LOC_Os03g03164.1
G1L1 OsG1L1
 G1 LIKE PROTEIN 1 OsG1-like 1
 2 Seed - Morphological traits - Grain shape
Reproductive organ - Panicle, Mode of branching
Other
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - Inflorescence
 GO:0009414 - response to water deprivation
GO:0003677 - DNA binding
GO:0009299 - mRNA transcription
GO:0007275 - multicellular organismal development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0010229 - inflorescence development
GO:0010228 - vegetative to reproductive phase transition
GO:0009416 - response to light stimulus
GO:0009737 - response to abscisic acid stimulus
 TO:0000621 - inflorescence development trait
TO:0000050 - inflorescence branching
TO:0000734 - grain length
TO:0000641 - primary branch length
TO:0000276 - drought tolerance
TO:0000397 - grain size
TO:0006030 - spikelet meristem identity
TO:0000040 - panicle length
TO:0000547 - primary branch number
TO:0000456 - spikelet number
TO:0000615 - abscisic acid sensitivity
TO:0000392 - sterility or fertility trait
 PO:0009049 - inflorescence
PO:0006327 - spikelet meristem
PO:0009105 - inflorescence branch meristem
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
PO:0000230 - inflorescence meristem
PO:0020104 - leaf sheath
Os02g0166800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g07030.3
LOC_Os02g07030.2
LOC_Os02g07030.1
G1L2 OsG1L2
 G1 LIKE PROTEIN 2 OsG1-like 2
 6 Reproductive organ - Inflorescence
Reproductive organ - Pollination, fertilization, fertility
Other
Reproductive organ - Panicle, Mode of branching
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
 GO:0010228 - vegetative to reproductive phase transition
GO:0009414 - response to water deprivation
GO:0005634 - nucleus
GO:0010229 - inflorescence development
GO:0009416 - response to light stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0003677 - DNA binding
GO:0009299 - mRNA transcription
GO:0007275 - multicellular organismal development
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000040 - panicle length
TO:0000456 - spikelet number
TO:0000615 - abscisic acid sensitivity
TO:0000397 - grain size
TO:0000392 - sterility or fertility trait
TO:0000276 - drought tolerance
TO:0000641 - primary branch length
TO:0000621 - inflorescence development trait
TO:0000557 - secondary branch number
TO:0006030 - spikelet meristem identity
TO:0000050 - inflorescence branching
TO:0000547 - primary branch number
 PO:0009105 - inflorescence branch meristem
PO:0001083 - inflorescence development stage
PO:0020104 - leaf sheath
PO:0005052 - plant callus
PO:0009047 - stem
PO:0000230 - inflorescence meristem
PO:0006327 - spikelet meristem
PO:0009005 - root
PO:0009049 - inflorescence
PO:0020148 - shoot apical meristem
Os06g0672400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g46030.1
G1L5 OsG1L5
TAW1
OsTAW1
 G1 LIKE PROTEIN 5 TAWAWA1
 10 Reproductive organ - Inflorescence
Other
Tolerance and resistance - Stress tolerance
Reproductive organ - Panicle, Mode of branching
 GO:0010077 - maintenance of inflorescence meristem identity
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010073 - meristem maintenance
GO:0009414 - response to water deprivation
GO:0009742 - brassinosteroid mediated signaling
GO:0009909 - regulation of flower development
GO:0003677 - DNA binding
GO:0009299 - mRNA transcription
GO:0007275 - multicellular organismal development
GO:0009416 - response to light stimulus
GO:0005634 - nucleus
GO:0009737 - response to abscisic acid stimulus
GO:0010229 - inflorescence development
GO:0010228 - vegetative to reproductive phase transition
 TO:0006017 - meristem identity
TO:0000615 - abscisic acid sensitivity
TO:0000373 - inflorescence anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0006031 - inflorescence size
TO:0000622 - flower development trait
TO:0002677 - brassinosteroid sensitivity
TO:0006030 - spikelet meristem identity
TO:0000276 - drought tolerance
 PO:0020148 - shoot apical meristem
PO:0001083 - inflorescence development stage
PO:0007615 - flower development stage
PO:0009049 - inflorescence
PO:0009005 - root
PO:0005052 - plant callus
PO:0006327 - spikelet meristem
PO:0000230 - inflorescence meristem
Os10g0478000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g33780.1
CG cg*
cg
 CIGER SHAPED PANICLE ciger shaped panicle
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
 TO:0000391 - seed size
TO:0000576 - stem length
TO:0000146 - seed length
TO:0000089 - panicle type
 PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009010 - seed
-
DN2 Dn2
 DENSE PANICLE 2 Dense panicle2
Dense panicle 2
Dense panicle-2
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000576 - stem length
TO:0000339 - stem thickness
TO:0000089 - panicle type
TO:0000484 - seed shape
 PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009010 - seed
-
DN3 dn3
 DENSE PANICLE 3 dense panicle3
dense panicle 3
dense panicle-3
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000052 - primary branching of inflorescence
TO:0000089 - panicle type
TO:0000142 - secondary branching of inflorescence
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000040 - panicle length
 PO:0009039 - glume
PO:0009049 - inflorescence
PO:0009037 - lemma
PO:0009038 - palea
-
FZP fzp*
fzp
OsBD1
BD1
OsERF#078
OsERF078
OsERF78
ERF78
AP2/EREBP#133
AP2/EREBP133
BFL1
SGDP7
OsSGDP7
 FRIZZY PANICLE frizzy panicle
BRANCHED SILKLESS 1 homolog
ethylene response factor 78
APETALA2/ethylene-responsive element binding protein 133
BRANCHED FLORETLESS 1
FRIZZLE PANICLE
Small Grain and Dense Panicle 7
 7 Reproductive organ - panicle
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
 GO:0008284 - positive regulation of cell proliferation
GO:0030307 - positive regulation of cell growth
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0010600 - regulation of auxin biosynthetic process
GO:0043067 - regulation of programmed cell death
GO:0048449 - floral organ formation
GO:0009690 - cytokinin metabolic process
GO:0010074 - maintenance of meristem identity
GO:0010582 - floral meristem determinacy
GO:0045449 - regulation of transcription
GO:0048497 - maintenance of floral organ identity
GO:0010093 - specification of floral organ identity
GO:0010229 - inflorescence development
GO:0003700 - transcription factor activity
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006351 - transcription, DNA-dependent
GO:0007275 - multicellular organismal development
GO:0010073 - meristem maintenance
 TO:0000152 - panicle number
TO:0000499 - flower anatomy and morphology trait
TO:0002660 - cytokinin content
TO:0000557 - secondary branch number
TO:0000734 - grain length
TO:0000262 - panicle shape
TO:0000621 - inflorescence development trait
TO:0000396 - grain yield
TO:0000050 - inflorescence branching
TO:0002759 - grain number
TO:0000592 - 1000-dehulled grain weight
TO:0000089 - panicle type
TO:0000456 - spikelet number
TO:0000397 - grain size
TO:0000240 - sterile lemma length
TO:0000449 - grain yield per plant
TO:0000382 - 1000-seed weight
TO:0000657 - spikelet anatomy and morphology trait
TO:0000605 - hydrogen peroxide content
TO:0000040 - panicle length
TO:0000447 - filled grain number
TO:0000650 - lemma length
TO:0000472 - vascular bundle number
TO:0002672 - auxin content
 PO:0001047 - lemma development stage
PO:0009049 - inflorescence
PO:0009013 - portion of meristem tissue
PO:0009037 - lemma
PO:0009046 - flower
PO:0001083 - inflorescence development stage
PO:0007602 - floral organ primordium development stage
PO:0009038 - palea
PO:0009040 - sterile lemma
PO:0009051 - spikelet
Os07g0669500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g47330.1
ISPR1 ISpr1*
ISpr1
 INHIBITOR FOR SPREADING PANICLE 1 Inhibitor for spreading panicle1
Inhibitor for spreading panicle 1
Inhibitor for spreading panicle-1
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
ISPR2 ISpr2*
ISpr2
 INHIBITOR FOR SPREADING PANICLE 2 Inhibitor for spreading panicle2
Inhibitor for spreading panicle 2
Inhibitor for spreading panicle-2
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
LHD lhd
 LEAFY HEAD leafy head
 Reproductive organ - Inflorescence
 GO:0010229 - inflorescence development
GO:0048510 - regulation of timing of transition from vegetative to reproductive phase
GO:0010228 - vegetative to reproductive phase transition
 TO:0000089 - panicle type
TO:0000621 - inflorescence development trait
TO:0000735 - plastochron
TO:0000207 - plant height
 PO:0020122 - inflorescence axis
-
NP np*
np
 NUDE PANICLE nude panicle
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
PAP1 pap1
 PANICLE PHYTOMER 1 panicle phytomer1
panicle phytomer 1
panicle phytomer-1
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000040 - panicle length
TO:0000052 - primary branching of inflorescence
TO:0000152 - panicle number
TO:0000240 - sterile lemma length
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000089 - panicle type
 PO:0009038 - palea
PO:0009049 - inflorescence
PO:0009037 - lemma
PO:0006321 - primary inflorescence branch
- image Id ( 6706 )
PD Pd
Pd(a)
Pd(b)
 PENDANT PANICLE Pendant panicle
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
RP rp(t)(rpt)
rtp
rp
 RETARDED PANICLE DEVELOPMENT retarded panicle development
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000499 - flower anatomy and morphology trait
 PO:0009046 - flower
PO:0009049 - inflorescence
-
SHP2 shp2
 SHEATHED PANICLE 2 sheathed panicle2
sheathed panicle 2
sheathed panicle-2
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
 TO:0000089 - panicle type
TO:0000165 - panicle exsertion
TO:0000145 - internode length
 PO:0020142 - stem internode
PO:0009049 - inflorescence
-
SPR2 Spr2
 SPREADING PANICLE 2 Spreading panicle2
Spreading panicle-2
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
SPRA Spra*
 SPREADING PANICLE A Spreading panicle-a
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
SPRB Sprb*
 SPREADING PANICLE B Spreading panicle-b
 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
SHP1(EX) Shp1(Ex)
Ex
Shp1
 SHEATHED PANICLE1 Sheathed panicle1
Sheathed panicle 1
Sheathed panicle-1
 1 Reproductive organ - Inflorescence
 GO:0009826 - unidimensional cell growth
GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000145 - internode length
TO:0000165 - panicle exsertion
 PO:0020142 - stem internode
PO:0009049 - inflorescence
-
LAX1 lax
lax(lx)
lx
OsbHLH123
bHLH123
OsLAX1
BOS1
OsBOS1
 LAX PANICLE 1 lax panicle
Transcription factor LAX PANICLE
lax panicle1
basic helix-loop-helix protein 123
LAX PANICLE1
branch one seed 1
 1 Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - panicle
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Inflorescence
 GO:0005634 - nucleus
GO:0045449 - regulation of transcription
GO:0005985 - sucrose metabolic process
GO:0005982 - starch metabolic process
GO:0010081 - regulation of inflorescence meristem growth
GO:0009753 - response to jasmonic acid stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009735 - response to cytokinin stimulus
GO:0010229 - inflorescence development
GO:0009733 - response to auxin stimulus
GO:0009734 - auxin mediated signaling pathway
GO:0009555 - pollen development
GO:0048497 - maintenance of floral organ identity
GO:0048444 - floral organ morphogenesis
GO:0048437 - floral organ development
GO:0003677 - DNA binding
GO:0006350 - transcription
GO:0030528 - transcription regulator activity
GO:0007275 - multicellular organismal development
 TO:0000207 - plant height
TO:0000590 - grain weight
TO:0000456 - spikelet number
TO:0000501 - spikelet weight
TO:0000436 - spikelet sterility
TO:0000089 - panicle type
TO:0000447 - filled grain number
TO:0000547 - primary branch number
TO:0000657 - spikelet anatomy and morphology trait
TO:0000172 - jasmonic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0002677 - brassinosteroid sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000163 - auxin sensitivity
TO:0000371 - yield trait
TO:0000621 - inflorescence development trait
TO:0000625 - spikelet density
TO:0001014 - leaf dry weight
TO:0000449 - grain yield per plant
TO:0002759 - grain number
TO:0000382 - 1000-seed weight
TO:0000440 - grain number per plant
TO:0000455 - seed set percent
TO:0000399 - grain thickness
TO:0000734 - grain length
TO:0000145 - internode length
TO:0000397 - grain size
TO:0000040 - panicle length
TO:0000557 - secondary branch number
TO:0000152 - panicle number
TO:0000050 - inflorescence branching
TO:0002600 - flower organ size
TO:0000622 - flower development trait
TO:0000240 - sterile lemma length
TO:0000053 - pollen sterility
TO:0000180 - spikelet fertility
TO:0000137 - days to heading
TO:0006022 - floral organ development trait
 PO:0009029 - stamen
PO:0007615 - flower development stage
PO:0009040 - sterile lemma
PO:0009051 - spikelet
PO:0009037 - lemma
PO:0009049 - inflorescence
PO:0009038 - palea
PO:0001083 - inflorescence development stage
PO:0001007 - pollen development stage
PO:0001048 - palea development stage
PO:0020142 - stem internode
Os01g0831000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g61480.1
image Id ( 6720 )
SHP4 Shp4(Gb)
Gb
Shp4
 SHEATHED PANICLE 4 Sheathed panicle4
Sheathed panicle 4
Sheathed panicle-4
 3 Reproductive organ - Inflorescence
 GO:0009826 - unidimensional cell growth
GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000145 - internode length
TO:0000165 - panicle exsertion
 PO:0020142 - stem internode
PO:0009049 - inflorescence
-
SHP5 shp5(t)
shp5
 SHEATHED PANICLE 5 sheathed panicle5
sheathed panicle 5
sheathed panicle-5
 4 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
 TO:0000089 - panicle type
TO:0000165 - panicle exsertion
TO:0000145 - internode length
 PO:0020142 - stem internode
PO:0009049 - inflorescence
-
SPR1 spr1
 SPREADING PANICLE 1 spreading panicle1
spreading panicle-1
 4 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
D11 d11(d8)
dwf10
d8
D11/CYP724B1
d11
CYP724B1
GNS4
OsD11
PMM1
OsPMM1
PMM1/D11
NBG4
OsCPB1
CPB1
CPB1/D11
 DWARF SHINKANEAIKOKU OR NOHRIN 28 shinkaneaikoku or nohrin 28 dwarf
DWARF SHINKANEAIKOKU OR NOHRIN 28
OsDWARF11
dwarf-11
Cytochrome P450 724B1
Dwarf protein 11
cytochrome P450 CYP724B1
DWARF11
grain number and size on chromosome 4
Panicle Morphology Mutant 1
Notched Belly Grain 4
CLUSTERED PRIMARY BRANCH 1
 4 Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Vegetative organ - Leaf
Reproductive organ - Heading date
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
Seed - Morphological traits
Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Panicle, Mode of branching
 GO:0009055 - electron carrier activity
GO:0004497 - monooxygenase activity
GO:0016021 - integral to membrane
GO:0008199 - ferric iron binding
GO:0007275 - multicellular organismal development
GO:0006879 - cellular iron ion homeostasis
GO:0016020 - membrane
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0016132 - brassinosteroid biosynthetic process
GO:0009742 - brassinosteroid mediated signaling
GO:0009414 - response to water deprivation
GO:0051607 - defense response to virus
GO:0006826 - iron ion transport
GO:0055114 - oxidation reduction
GO:0009741 - response to brassinosteroid stimulus
GO:0022900 - electron transport chain
GO:0009826 - unidimensional cell growth
GO:0009647 - skotomorphogenesis
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 - heme binding
GO:0009753 - response to jasmonic acid stimulus
GO:0051512 - positive regulation of unidimensional cell growth
GO:0010029 - regulation of seed germination
GO:0048573 - photoperiodism, flowering
 TO:0000020 - black streak dwarf virus resistance
TO:0006032 - panicle size
TO:0000276 - drought tolerance
TO:0000641 - primary branch length
TO:0002730 - grain shape
TO:0002759 - grain number
TO:0000567 - tiller angle
TO:0000592 - 1000-dehulled grain weight
TO:0000484 - seed shape
TO:0002677 - brassinosteroid sensitivity
TO:0000455 - seed set percent
TO:0000456 - spikelet number
TO:0000137 - days to heading
TO:0000557 - secondary branch number
TO:0000172 - jasmonic acid sensitivity
TO:0000139 - grains per panicle
TO:0000396 - grain yield
TO:0000040 - panicle length
TO:0000145 - internode length
TO:0000207 - plant height
TO:0000391 - seed size
TO:0000206 - leaf angle
TO:0000329 - tillering ability
TO:0000346 - tiller number
TO:0002676 - brassinosteroid content
TO:0000371 - yield trait
TO:0000501 - spikelet weight
TO:0002616 - flowering time
TO:0000050 - inflorescence branching
TO:0002688 - leaf lamina joint bending
TO:0000402 - grain width
TO:0000397 - grain size
TO:0000052 - primary branching of inflorescence
TO:0000180 - spikelet fertility
TO:0000576 - stem length
TO:0000657 - spikelet anatomy and morphology trait
TO:0000547 - primary branch number
 PO:0006321 - primary inflorescence branch
PO:0020122 - inflorescence axis
PO:0009049 - inflorescence
PO:0009047 - stem
PO:0009010 - seed
PO:0020142 - stem internode
Os04g0469800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g39430.1
LOC_Os04g39430.2
image Id ( 6753 )
SPR3 Spr3(t)
Spr3
 SPREADING PANICLE 3 Spreading panicle3
Spreading panicle-3
 4 Character as QTL - Yield and productivity
Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
-
SHP3 Shp3(Ga)
Ga
Shp3
 SHEATHED PANICLE 3 Sheathed panicle3
Sheathed panicle 3
Sheathed panicle-3
 5 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
 TO:0000089 - panicle type
TO:0000165 - panicle exsertion
TO:0000145 - internode length
 PO:0009049 - inflorescence
PO:0020142 - stem internode
-
NL2 nl2
 NECK LEAF 2 neck leaf2
neck leaf 2
neck leaf-2
 5 Reproductive organ - Inflorescence
 GO:0030154 - cell differentiation
 TO:0000089 - panicle type
 PO:0009049 - inflorescence
- image Id ( 6760 )
RI ri
 VERTICILLATE RACHIS verticillate rachis
 5 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000052 - primary branching of inflorescence
TO:0000089 - panicle type
 PO:0006321 - primary inflorescence branch
PO:0009049 - inflorescence
-
NL1 nl1
OsGATA15
GATA15
OsNL1
 NECK LEAF 1 neck leaf1
neck leaf 1
neck leaf-1
NECK LEAF1
GATA transcription factor 15
GATA factor 15
 5 Vegetative organ - Culm
Reproductive organ - panicle
Reproductive organ - Inflorescence
 GO:0010228 - vegetative to reproductive phase transition
GO:0010229 - inflorescence development
GO:0010432 - bract development
GO:0030154 - cell differentiation
 TO:0000089 - panicle type
TO:0000050 - inflorescence branching
TO:0000456 - spikelet number
TO:0000654 - shoot development trait
TO:0000346 - tiller number
TO:0000547 - primary branch number
TO:0000557 - secondary branch number
TO:0000621 - inflorescence development trait
 PO:0009055 - bract
PO:0009049 - inflorescence
PO:0025487 - bract primordium
PO:0004709 - axillary bud
PO:0001083 - inflorescence development stage
PO:0020141 - stem node
Os05g0578900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g50270.1
image Id ( 6767 )
C C
Cp
OsC1
Os-C1
C1
OsMyb6
Myb6
OsPL6
PL6
OsGL1E
GL1E
Os2R_MYB63
2R_MYB63
OsC1PLSr
C1PLSr
MYB2-74
OsMYB2-74
 CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin
Chromogen
Rice C1 anthocyanin regulatory gene
myb transcription factor 6
transcription factor MYB6
Oryza saliva C1
rice homolog of maize C1
Purple Leaf 6. GLABRA1E
GLABRA 1E
R2R3-MYB Transcription Factor 63
R2R3-MYB transcription factor 2-74
 6 Coloration - Chlorophyll
Other
Seed - Morphological traits
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Reproductive organ - Inflorescence
Coloration - Anthocyanin
 GO:0031542 - positive regulation of anthocyanin biosynthetic process
GO:0009414 - response to water deprivation
GO:0009962 - regulation of flavonoid biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0009718 - anthocyanin biosynthetic process
GO:0003677 - DNA binding
GO:0031540 - regulation of anthocyanin biosynthetic process
GO:0009658 - chloroplast organization
GO:0006979 - response to oxidative stress
GO:0015994 - chlorophyll metabolic process
GO:0005634 - nucleus
 TO:0000071 - anthocyanin content
TO:0000258 - leaf thickness
TO:0002724 - leaf sheath color
TO:0000293 - chlorophyll-a content
TO:0002675 - gibberellic acid content
TO:0002715 - chloroplast development trait
TO:0000290 - flavonoid content
TO:0000426 - internode color
TO:0000190 - seed coat color
TO:0000326 - leaf color
TO:0000367 - basal leaf sheath color
TO:0000141 - awn color
TO:0000400 - sterile lemma color
TO:0000264 - lemma and palea color
TO:0000295 - chlorophyll-b content
TO:0000316 - photosynthetic ability
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0000364 - leaf collar color
TO:0000140 - apiculus color
TO:0000276 - drought tolerance
TO:0001018 - transpiration rate
TO:0000185 - stigma color
TO:0000340 - total soluble sugar content
TO:0000522 - stomatal conductance
TO:0001015 - photosynthetic rate
TO:0002667 - abscisic acid content
TO:0000495 - chlorophyll content
TO:0002660 - cytokinin content
 PO:0009049 - inflorescence
PO:0007632 - seed maturation stage
PO:0005005 - shoot internode
PO:0009010 - seed
PO:0025349 - awn
PO:0025034 - leaf
PO:0006033 - paleal apiculus
PO:0009037 - lemma
PO:0009073 - stigma
PO:0020104 - leaf sheath
PO:0009006 - shoot system
PO:0009025 - vascular leaf
PO:0009038 - palea
PO:0006032 - lemma awn
PO:0006012 - leaf collar
Os06g0205100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g10350.1
CL Cl
 CLUSTERED SPIKELETS Clustered spikelets
 6 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000040 - panicle length
TO:0000180 - spikelet fertility
 PO:0009049 - inflorescence
- image Id ( 6775 )
AN4 An4
 AWN 4 Awn4
Awn 4
Awn-4
 8 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000142 - secondary branching of inflorescence
TO:0000052 - primary branching of inflorescence
TO:0000072 - awn length
 PO:0006032 - lemma awn
PO:0009049 - inflorescence
-
DN1 Dn1
 DENSE PANICLE 1 Dense panicle1
Dense panicle 1
Dense panicle-1
 9 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000142 - secondary branching of inflorescence
TO:0000040 - panicle length
 PO:0009049 - inflorescence
- image Id ( 6789 )
BP Bp
 BURLUSH-LIKE PANICLE Burlush-like panicle
 9 Reproductive organ - Inflorescence
 GO:0007275 - multicellular organismal development
 TO:0000089 - panicle type
TO:0000040 - panicle length
 PO:0009049 - inflorescence
- image Id ( 6792 )
SP1 sp
SP
OsNPF4.1
NPF4.1
OsSP1
BPB1
OsBPB1
 SHORT PANICLE 1 short panicle
SHORT PANICLE
short panicle1
NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1
basal primary branch 1
 11 Vegetative organ - Root
Reproductive organ - Inflorescence
Seed - Morphological traits - Grain shape
Reproductive organ - panicle
Character as QTL - Yield and productivity
Vegetative organ - Culm
 GO:0009740 - gibberellic acid mediated signaling
GO:0009809 - lignin biosynthetic process
GO:0051726 - regulation of cell cycle
GO:0030244 - cellulose biosynthetic process
GO:0005985 - sucrose metabolic process
GO:0005982 - starch metabolic process
GO:0009742 - brassinosteroid mediated signaling
GO:0007275 - multicellular organismal development
GO:0009873 - ethylene mediated signaling pathway
GO:0009738 - abscisic acid mediated signaling
GO:0009736 - cytokinin mediated signaling
GO:0009734 - auxin mediated signaling pathway
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010371 - regulation of gibberellin biosynthetic process
 TO:0000040 - panicle length
TO:0000733 - lignin biosynthesis trait
TO:0000207 - plant height
TO:0000430 - germination rate
TO:0000397 - grain size
TO:0000233 - root volume
TO:0000346 - tiller number
TO:0002730 - grain shape
TO:0000734 - grain length
TO:0000227 - root length
TO:0000402 - grain width
TO:0000399 - grain thickness
TO:0000382 - 1000-seed weight
TO:0000050 - inflorescence branching
TO:0000557 - secondary branch number
TO:0000731 - lignin content
TO:0000447 - filled grain number
TO:0000089 - panicle type
TO:0000547 - primary branch number
TO:0002759 - grain number
 PO:0009049 - inflorescence
Os11g0235200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g12740.1
image Id ( 6799 )
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/rice/oryzabase