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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
NYC1 nyc1
OsNYC1
 NON-YELLOW COLORING 1 Chlorophyl b degrading enzyme
Chlase
Non-Yellow Coloring 1
non-yellow coloring1
Probable chlorophyll(ide) b reductase NYC1
chloroplastic
Protein NON-YELLOW COLORING 1
short-chain dehydrogenase/reductase NYC1
 1 Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0005488 - binding
GO:0009535 - chloroplast thylakoid membrane
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0010150 - leaf senescence
GO:0016021 - integral to membrane
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0009536 - plastid
GO:0016491 - oxidoreductase activity
GO:0042170 - plastid membrane
 TO:0002712 - stay green trait
TO:0000249 - leaf senescence
TO:0000599 - enzyme activity
TO:0000495 - chlorophyll content
 PO:0009037 - lemma
PO:0001054 - 4 leaf senescence stage
PO:0020104 - leaf sheath
PO:0020122 - inflorescence axis
PO:0009025 - vascular leaf
PO:0009038 - palea
Os01g0227100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12710.2
LOC_Os01g12710.1
YAB5 OsYAB5
OsYAB3
YAB3
TOB1
OsTOB1
 YABBY 5 Protein YABBY 5
TONGARI-BOUSHI1
TONGARI-BOUSHI 1
 4 Other
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Vegetative organ - Culm
 GO:0051510 - regulation of unidimensional cell growth
GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0080006 - internode patterning
GO:0009408 - response to heat
GO:0010073 - meristem maintenance
GO:0048437 - floral organ development
GO:0010229 - inflorescence development
GO:0009739 - response to gibberellin stimulus
GO:0005634 - nucleus
GO:0030154 - cell differentiation
GO:0046872 - metal ion binding
GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0048366 - leaf development
GO:0009908 - flower development
 TO:0000655 - leaf development trait
TO:0000207 - plant height
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000019 - seedling height
TO:0000165 - panicle exsertion
TO:0000040 - panicle length
TO:0000166 - gibberellic acid sensitivity
TO:0000622 - flower development trait
TO:0000259 - heat tolerance
TO:0000657 - spikelet anatomy and morphology trait
TO:0002600 - flower organ size
TO:0006038 - floral organ number
TO:0000621 - inflorescence development trait
 PO:0001083 - inflorescence development stage
PO:0000017 - vascular leaf primordium
PO:0020104 - leaf sheath
PO:0009051 - spikelet
PO:0025487 - bract primordium
PO:0007615 - flower development stage
PO:0025034 - leaf
PO:0001050 - leaf development stage
PO:0025477 - floral organ primordium
Os04g0536300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g45330.1
YGL1 OsYGL1
CHLG
Ygl1
CS
OsCHLG
 YELLOW-GREEN LEAF 1 chlorina
Chl synthetase
Chlorophyll synthase
yellow green leaf 1
 5 Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0051707 - response to other organism
GO:0006098 - pentose-phosphate shunt
GO:0006364 - rRNA processing
GO:0009073 - aromatic amino acid family biosynthetic process
GO:0009965 - leaf morphogenesis
GO:0010027 - thylakoid membrane organization
GO:0009534 - chloroplast thylakoid
GO:0015994 - chlorophyll metabolic process
GO:0042793 - transcription from plastid promoter
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0016021 - integral to membrane
GO:0016117 - carotenoid biosynthetic process
GO:0019344 - cysteine biosynthetic process
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0030154 - cell differentiation
GO:0046408 - chlorophyll synthetase activity
GO:0051607 - defense response to virus
GO:0046686 - response to cadmium ion
GO:0009902 - chloroplast relocation
GO:0015995 - chlorophyll biosynthetic process
GO:0031969 - chloroplast membrane
GO:0009416 - response to light stimulus
 TO:0000075 - light sensitivity
TO:0000148 - viral disease resistance
TO:0000020 - black streak dwarf virus resistance
 Os05g0349700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g28200.2
LOC_Os05g28200.1
ESL4 CDPK12
OsCDPK12
OsCPK12
CPK12
OsESL4
 EARLY SENESCENCE LEAF 4 calcium-dependent protein kinase
Calcium-dependent protein kinase 12
Early senescence leaf 4
 4 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Tolerance and resistance
Character as QTL - Plant growth activity
Vegetative organ - Leaf
 GO:0005634 - nucleus
GO:0016020 - membrane
GO:0009414 - response to water deprivation
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
GO:0031000 - response to caffeine
GO:0005737 - cytoplasm
GO:0005886 - plasma membrane
GO:0009627 - systemic acquired resistance
GO:0009697 - salicylic acid biosynthetic process
GO:0006979 - response to oxidative stress
GO:0018105 - peptidyl-serine phosphorylation
GO:0010310 - regulation of hydrogen peroxide metabolic process
GO:0006807 - nitrogen compound metabolic process
GO:0010150 - leaf senescence
 TO:0000371 - yield trait
TO:0000495 - chlorophyll content
TO:0000440 - grain number per plant
TO:0000276 - drought tolerance
TO:0000271 - inflorescence length
TO:0000605 - hydrogen peroxide content
TO:0002657 - oxidative stress
TO:0000455 - seed set percent
TO:0000249 - leaf senescence
 PO:0007633 - endosperm development stage
PO:0020104 - leaf sheath
PO:0009047 - stem
PO:0025034 - leaf
Os04g0560600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g47300.1
CAB2R Oscab2R
CAB-2
OsLhcp
Lhcb1
Lhcb1a
OsLhcb1
OsLhcb1a
 CHLOROPHYLL A/B BINDING PROTEIN 2R "Chlorophyll a-b binding protein 2
chloroplastic"
LHCII type I CAB-2
light harvesting chlorophyll a/b binding protein 2
 1 Vegetative organ - Leaf
 GO:0009522 - photosystem I
GO:0009658 - chloroplast organization
GO:0009523 - photosystem II
GO:0009765 - photosynthesis, light harvesting
GO:0009536 - plastid
GO:0016021 - integral to membrane
GO:0015979 - photosynthesis
GO:0016168 - chlorophyll binding
GO:0009535 - chloroplast thylakoid membrane
GO:0018298 - protein-chromophore linkage
GO:0000287 - magnesium ion binding
GO:0009507 - chloroplast
 TO:0002715 - chloroplast development trait
 Os01g0600900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g41710.1
NOE1 CATC
OsCat
OsCatC
OsCATC
OsNOE1
noe1
catC
OsCATC
CAT3
OsCAT3
LLM9428
OsLLM9428
 NITRIC OXIDE EXCESS 1 catalase C
catalase isozyme C
nitric oxide excess1
large lesion mimic mutant 9428
 3 Biochemical character
Vegetative organ - Leaf
Character as QTL - Plant growth activity
Seed - Physiological traits - Shattering
Tolerance and resistance - Disease resistance
Vegetative organ - Culm
Tolerance and resistance - Lesion mimic
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
 GO:0010939 - regulation of necrotic cell death
GO:0009725 - response to hormone stimulus
GO:0042744 - hydrogen peroxide catabolic process
GO:0005982 - starch metabolic process
GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0009414 - response to water deprivation
GO:0009642 - response to light intensity
GO:0033484 - nitric oxide homeostasis
GO:0010229 - inflorescence development
GO:0031348 - negative regulation of defense response
GO:0042548 - regulation of photosynthesis, light reaction
GO:0005634 - nucleus
GO:0004096 - catalase activity
GO:0006979 - response to oxidative stress
GO:0042742 - defense response to bacterium
GO:0020037 - heme binding
GO:0009404 - toxin metabolic process
GO:0043067 - regulation of programmed cell death
GO:0009651 - response to salt stress
GO:0005739 - mitochondrion
GO:0006801 - superoxide metabolic process
GO:0010150 - leaf senescence
GO:0050777 - negative regulation of immune response
GO:0009737 - response to abscisic acid stimulus
GO:0009408 - response to heat
GO:0005777 - peroxisome
GO:0045454 - cell redox homeostasis
GO:0009416 - response to light stimulus
 TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000074 - blast disease
TO:0000382 - 1000-seed weight
TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0000063 - mimic response
TO:0000455 - seed set percent
TO:0000326 - leaf color
TO:0000019 - seedling height
TO:0002637 - leaf size
TO:0000460 - light intensity sensitivity
TO:0000075 - light sensitivity
TO:0000357 - growth and development trait
TO:0002662 - leaf rolling tolerance
TO:0000621 - inflorescence development trait
TO:0000276 - drought tolerance
TO:0000473 - grain shattering
TO:0000615 - abscisic acid sensitivity
TO:0000152 - panicle number
TO:0000401 - plant growth hormone sensitivity
TO:0000447 - filled grain number
 PO:0001054 - 4 leaf senescence stage
PO:0025034 - leaf
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
Os03g0131200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03910.1
COW1 OsCOW1
oscow1
OsYUC8
YUC8
NAL7
OsNAL7
OsYUCCA8
YUCCA8
FMO
OsFMO(t)
REIN7
YUC8/REIN7
 CONSTITUTIVELY WILTED 1 CONSTITUTIVELY WILTED1
Constitutively wilted 1
NARROW LEAF7
NARROW LEAF 7
YUCCA-LIKE GENE 8
flavin monooxygenase
rice ethylene-insensitive 7
 3 Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Vegetative organ - Root
Tolerance and resistance - Disease resistance
 GO:0009851 - auxin biosynthetic process
GO:0009873 - ethylene mediated signaling pathway
GO:0022603 - regulation of anatomical structure morphogenesis
GO:0000139 - Golgi membrane
GO:0004499 - flavin-containing monooxygenase activity
GO:0005654 - nucleoplasm
GO:0009409 - response to cold
GO:0048366 - leaf development
GO:0047434 - indolepyruvate decarboxylase activity
GO:0009612 - response to mechanical stimulus
GO:0030104 - water homeostasis
GO:0009734 - auxin mediated signaling pathway
GO:0050661 - NADP or NADPH binding
GO:0050660 - FAD binding
GO:0048825 - cotyledon development
GO:0010229 - inflorescence development
GO:0009911 - positive regulation of flower development
GO:0007275 - multicellular organismal development
GO:0005829 - cytosol
GO:0048364 - root development
GO:0051607 - defense response to virus
 TO:0000655 - leaf development trait
TO:0000227 - root length
TO:0000656 - root development trait
TO:0002672 - auxin content
TO:0000303 - cold tolerance
TO:0000492 - leaf shape
TO:0000471 - root penetration index
TO:0002665 - root hair length
TO:0000148 - viral disease resistance
 PO:0000025 - root tip
PO:0020141 - stem node
PO:0009047 - stem
PO:0025034 - leaf
PO:0007520 - root development stage
Os03g0162000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g06654.2
LOC_Os03g06654.1
CKT1 OHK5
HK
OsHK6
HK6
Crl1a
Ohk5
OsHK1
OsCKT1
ABL1
OsABL1
 CYTOKININ TOLERANT 1 histidine kinase 6
His kinase 6
cytokinin tolerant 1
adaxial-abaxial bipolar leaf1
ADAXIAL-ABAXIAL BIPOLAR LEAF 1
 2 Vegetative organ - Leaf
Biochemical character
Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility
Character as QTL - Plant growth activity
Vegetative organ - Root
 GO:0010109 - regulation of photosynthesis
GO:0048573 - photoperiodism, flowering
GO:0000155 - two-component sensor activity
GO:0048364 - root development
GO:0004673 - protein histidine kinase activity
GO:0051302 - regulation of cell division
GO:0005783 - endoplasmic reticulum
GO:0005982 - starch metabolic process
GO:0005985 - sucrose metabolic process
GO:0009735 - response to cytokinin stimulus
GO:0009736 - cytokinin mediated signaling
GO:0009884 - cytokinin receptor activity
GO:0015995 - chlorophyll biosynthetic process
GO:0018106 - peptidyl-histidine phosphorylation
GO:0043455 - regulation of secondary metabolic process
GO:0048831 - regulation of shoot development
GO:0000156 - two-component response regulator activity
GO:0048366 - leaf development
GO:0009909 - regulation of flower development
GO:0005524 - ATP binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0016020 - membrane
 TO:0000152 - panicle number
TO:0000655 - leaf development trait
TO:0001015 - photosynthetic rate
TO:0000522 - stomatal conductance
TO:0000055 - leaf lamina pubescence
TO:0000135 - leaf length
TO:0002758 - flag leaf lamina width
TO:0000399 - grain thickness
TO:0002759 - grain number
TO:0000040 - panicle length
TO:0000316 - photosynthetic ability
TO:0000656 - root development trait
TO:0000167 - cytokinin sensitivity
TO:0002637 - leaf size
TO:0000485 - sterility related trait
TO:0002616 - flowering time
TO:0000137 - days to heading
TO:0006020 - shoot apical meristem development
TO:0000654 - shoot development trait
TO:0000622 - flower development trait
TO:0000373 - inflorescence anatomy and morphology trait
TO:0000370 - leaf width
TO:0000357 - growth and development trait
 PO:0000027 - lateral root tip
PO:0005029 - root primordium
PO:0007520 - root development stage
PO:0000025 - root tip
PO:0020121 - lateral root
Os02g0738400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g50480.1
AHP1 OHP1
HPt
OsAHP1
Hpt2
Ohp1
OsHP2
HP2
OsHpt2
OsHPt2
OsHP02
 HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1 histidine containing phosphotransmitter
authentic His-containing phosphotransfer protein 1
Authentic Histidine Phosphotransfer protein 1
 8 Reproductive organ - Pollination, fertilization, fertility
Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
 GO:0009723 - response to ethylene stimulus
GO:0004871 - signal transducer activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0009736 - cytokinin mediated signaling
GO:0009735 - response to cytokinin stimulus
 TO:0000420 - fertility related trait
TO:0000173 - ethylene sensitivity
TO:0000227 - root length
TO:0006001 - salt tolerance
TO:0000095 - osmotic response sensitivity
TO:0000656 - root development trait
TO:0000167 - cytokinin sensitivity
TO:0000346 - tiller number
TO:0000249 - leaf senescence
TO:0000207 - plant height
 PO:0000230 - inflorescence meristem
PO:0020148 - shoot apical meristem
Os08g0557700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g44350.1
AHP2 OHP2
HPt
OsAHP2 Hpt3
Ohp2
OsHP1
HP1
OsHpt3
OsHP01
 HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2 histidine containing phosphotransmitter
authentic His-containing phosphotransfer protein 2
histidine phosphotransfer protein 2
 9 Vegetative organ - Culm
Vegetative organ - Leaf
Biochemical character
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Root
 GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0004871 - signal transducer activity
GO:0009723 - response to ethylene stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009736 - cytokinin mediated signaling
 TO:0000420 - fertility related trait
TO:0000249 - leaf senescence
TO:0000095 - osmotic response sensitivity
TO:0000656 - root development trait
TO:0000173 - ethylene sensitivity
TO:0000227 - root length
TO:0000346 - tiller number
TO:0000167 - cytokinin sensitivity
TO:0000207 - plant height
TO:0006001 - salt tolerance
 PO:0000230 - inflorescence meristem
PO:0020148 - shoot apical meristem
Os09g0567400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g39400.2
LOC_Os09g39400.1
GER5 OsGLP1
GLP1
GER1
GLP110
OsGER1
OsGER5
OsGLP8-14
GLP8-14
OsCDP8.14
CDP8.14
 GERMIN-LIKE PROTEIN 5 Germin-like protein 8-14
Germin-like protein 5
Germin-like protein 1
Germin protein type 1
germin-like protein1
cupin domain protein 8.14
 8 Reproductive organ - panicle
Vegetative organ - Leaf
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Seed - Physiological traits - Storage substances
 GO:0005829 - cytosol
GO:0010109 - regulation of photosynthesis
GO:0051553 - flavone biosynthetic process
GO:0010941 - regulation of cell death
GO:0051555 - flavonol biosynthetic process
GO:0010229 - inflorescence development
GO:0009812 - flavonoid metabolic process
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0010224 - response to UV-B
GO:0009409 - response to cold
 TO:0000227 - root length
TO:0001027 - net photosynthetic rate
TO:0000605 - hydrogen peroxide content
TO:0000601 - UV-B light sensitivity
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000303 - cold tolerance
TO:0000206 - leaf angle
TO:0000063 - mimic response
 PO:0001083 - inflorescence development stage
PO:0020104 - leaf sheath
Os08g0460000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g35760.1
RL10 rl10
 ROLLED LEAF 10 9 Vegetative organ - Leaf
 GO:0030154 - cell differentiation
 -
RL7 rl7
 ROLLED LEAF 7 5 Vegetative organ - Leaf
 GO:0030154 - cell differentiation
 -
RL8 rl8
 ROLLED LEAF 8 5 Vegetative organ - Leaf
 GO:0030154 - cell differentiation
 -
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Coloration - Chlorophyll
Other
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
Seed - Morphological traits
Vegetative organ - Culm
 GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009739 - response to gibberellin stimulus
GO:0009957 - epidermal cell fate specification
GO:0051510 - regulation of unidimensional cell growth
GO:0080006 - internode patterning
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0012501 - programmed cell death
GO:0042127 - regulation of cell proliferation
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0048437 - floral organ development
GO:0001558 - regulation of cell growth
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0048316 - seed development
 TO:0000085 - leaf rolling
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000587 - endosperm quality
TO:0000474 - glume opening
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0001006 - adventitious root number
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0002681 - leaf curling
TO:0001012 - lateral root length
TO:0000019 - seedling height
TO:0000657 - spikelet anatomy and morphology trait
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000598 - protein content
TO:0000196 - amylose content
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000382 - 1000-seed weight
TO:0000326 - leaf color
TO:0001027 - net photosynthetic rate
TO:0000135 - leaf length
TO:0000295 - chlorophyll-b content
TO:0002757 - flag leaf length
TO:0000370 - leaf width
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000053 - pollen sterility
TO:0000391 - seed size
TO:0000655 - leaf development trait
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0025426 - phloem development stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020141 - stem node
PO:0001004 - anther development stage
PO:0025585 - floral organ formation stage
PO:0007520 - root development stage
PO:0020142 - stem internode
PO:0000293 - guard cell
PO:0006019 - leaf abaxial epidermis
PO:0001050 - leaf development stage
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
AGO1B OsAGO1b
AGO1b
AGO1-2
 ARGONAUTE 1B Protein argonaute 1B
 4 Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Culm
Other
 GO:0003676 - nucleic acid binding
GO:0005634 - nucleus
GO:0048366 - leaf development
GO:0031047 - gene silencing by RNA
GO:0005737 - cytoplasm
 TO:0000421 - pollen fertility
TO:0000655 - leaf development trait
TO:0000207 - plant height
TO:0000455 - seed set percent
TO:0000346 - tiller number
 PO:0025034 - leaf
PO:0001050 - leaf development stage
PO:0000002 - anther wall
Os04g0566500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g47870.2
LOC_Os04g47870.1
AGO2 OsAGO2
 ARGONAUTE 2 sativa Argonaute 2
Protein argonaute 2
ARGONAUTE2
 4 Tolerance and resistance - Stress tolerance
Other
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
 GO:0009409 - response to cold
GO:0009658 - chloroplast organization
GO:0003676 - nucleic acid binding
GO:0043067 - regulation of programmed cell death
GO:0051607 - defense response to virus
GO:0031047 - gene silencing by RNA
GO:0046466 - membrane lipid catabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0009690 - cytokinin metabolic process
GO:0048316 - seed development
GO:0009651 - response to salt stress
GO:0050687 - negative regulation of defense response to virus
GO:0006306 - DNA methylation
GO:0010150 - leaf senescence
 TO:0000734 - grain length
TO:0000455 - seed set percent
TO:0000615 - abscisic acid sensitivity
TO:0002660 - cytokinin content
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0002715 - chloroplast development trait
TO:0000495 - chlorophyll content
TO:0000020 - black streak dwarf virus resistance
TO:0000326 - leaf color
TO:0001015 - photosynthetic rate
TO:0000269 - 100-seed weight
TO:0000605 - hydrogen peroxide content
TO:0000449 - grain yield per plant
TO:0000396 - grain yield
TO:0000316 - photosynthetic ability
TO:0000303 - cold tolerance
 Os04g0615700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g52540.1
DCL3A OsDCL3a
 DICER-LIKE 3A Endoribonuclease Dicer homolog 3a
Dicer-like protein 3a
 1 Vegetative organ - Leaf
Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Insect resistance
Reproductive organ - Inflorescence
Tolerance and resistance - Disease resistance
 GO:0005524 - ATP binding
GO:0005634 - nucleus
GO:0006396 - RNA processing
GO:0030145 - manganese ion binding
GO:0000287 - magnesium ion binding
GO:0031047 - gene silencing by RNA
GO:0003677 - DNA binding
GO:0004386 - helicase activity
GO:0004525 - ribonuclease III activity
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0003723 - RNA binding
GO:0002215 - defense response to nematode
GO:0009873 - ethylene mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0050832 - defense response to fungus
GO:0009627 - systemic acquired resistance
GO:0009723 - response to ethylene stimulus
 TO:0000557 - secondary branch number
TO:0000124 - flag leaf angle
TO:0000074 - blast disease
TO:0000207 - plant height
TO:0000173 - ethylene sensitivity
TO:0000384 - nematode damage resistance
TO:0002667 - abscisic acid content
TO:0000172 - jasmonic acid sensitivity
 Os01g0909200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g68120.1
HB4 OSHB4
OsHox32
HOX32
OsHB4
Oshox32
PHB3
OsHDZ13
OsHDZIP13
HDZ13
HDZIP13
 HOMEODOMAIN CONTAINING PROTEIN 4 Homeobox-leucine zipper protein HOX32
Homeodomain transcription factor HOX32
HD-ZIP protein HOX32
rice homeobox gene 32
homeodomain-leucine zipper transcription factor 13
OsHDZIP transcription factor 13
 3 Other
Vegetative organ - Culm
Coloration - Chlorophyll
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0005634 - nucleus
GO:0005886 - plasma membrane
GO:0009416 - response to light stimulus
GO:0048366 - leaf development
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0046686 - response to cadmium ion
GO:0009733 - response to auxin stimulus
GO:0009414 - response to water deprivation
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0042546 - cell wall biogenesis
 TO:0000276 - drought tolerance
TO:0000370 - leaf width
TO:0000163 - auxin sensitivity
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000655 - leaf development trait
TO:0000051 - stem strength
TO:0001017 - water use efficiency
TO:0000085 - leaf rolling
TO:0000172 - jasmonic acid sensitivity
TO:0001015 - photosynthetic rate
TO:0000206 - leaf angle
TO:0000495 - chlorophyll content
TO:0000075 - light sensitivity
 PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009005 - root
PO:0009089 - endosperm
PO:0001050 - leaf development stage
Os03g0640800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g43930.2
LOC_Os03g43930.1
ASR4 Asr4
OsASR6
OsASR2
Asr2
OsASR1
ASR1
 ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN Abiotic Stress Responsive 6
"ABA-
stress and ripening-induced protein 2"
 1 Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0010188 - response to microbial phytotoxin
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0006950 - response to stress
GO:0050832 - defense response to fungus
GO:0009635 - response to herbicide
 TO:0000255 - sheath blight disease resistance
TO:0000085 - leaf rolling
TO:0000058 - herbicide sensitivity
TO:0006001 - salt tolerance
TO:0000477 - panicle blast disease resistance
TO:0000276 - drought tolerance
 Os01g0959200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g72910.1
ASR5 OsASR5
Asr5
Asr1
OsASR1
OsASR2
ASR2
 ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN Abiotic Stress Responsive 1
"ABA-
stress and ripening-induced protein 5"
"abscisic acid-
stress- and ripening (ASR) gene 5"
"abscisic acid
stress and ripening 2"
ABA stress-ripening-inducible 5 protein
 11 Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
 GO:0006970 - response to osmotic stress
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006950 - response to stress
GO:0005634 - nucleus
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009723 - response to ethylene stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0010044 - response to aluminum ion
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0042742 - defense response to bacterium
GO:0050832 - defense response to fungus
GO:0010119 - regulation of stomatal movement
 TO:0000255 - sheath blight disease resistance
TO:0000354 - aluminum sensitivity
TO:0002667 - abscisic acid content
TO:0000303 - cold tolerance
TO:0000095 - osmotic response sensitivity
TO:0000276 - drought tolerance
TO:0000175 - bacterial blight disease resistance
TO:0000173 - ethylene sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000522 - stomatal conductance
TO:0006001 - salt tolerance
 Os11g0167800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g06720.1
RAP1A OsMADS15
FDRMADS3
RMADS215
MADS15
DEP
 RICE APETALA 1A MADS-box transcription factor 15
Protein APETALA1-like A
degenerative palea
MADS box gene15
 7 Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Heading date
Other
Tolerance and resistance - Stress tolerance
Reproductive organ
Vegetative organ - Leaf
 GO:0031667 - response to nutrient levels
GO:0010229 - inflorescence development
GO:0042594 - response to starvation
GO:0006355 - regulation of transcription, DNA-dependent
GO:0003700 - transcription factor activity
GO:0005515 - protein binding
GO:0005634 - nucleus
GO:0016036 - cellular response to phosphate starvation
GO:0043565 - sequence-specific DNA binding
GO:0048573 - photoperiodism, flowering
GO:0010228 - vegetative to reproductive phase transition
GO:0003006 - reproductive developmental process
GO:0006350 - transcription
 TO:0000206 - leaf angle
TO:0000102 - phosphorus sensitivity
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0000621 - inflorescence development trait
 PO:0001083 - inflorescence development stage
PO:0020094 - plant egg cell
Os07g0108900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g01820.6
LOC_Os07g01820.5
LOC_Os07g01820.4
LOC_Os07g01820.1
LOC_Os07g01820.2
LOC_Os07g01820.3
LF1 HOX10
Oshox10
OsHox10
OsHB1
HB1
OSHB1
LF1/OsHB1
OsLF1
OsHDZ9
OsHDZIP9
HDZ9
HDZIP9
 LATERAL FLORET 1 rice homeobox gene 10
Homeobox-leucine zipper protein HOX10
Homeodomain transcription factor HOX10
HD-ZIP protein HOX10
HOMEODOMAIN CONTAINING PROTEIN 1
Homeodomain transcription factor HOX10
lateral florets 1
homeodomain-leucine zipper transcription factor 9
transcription factor 9
 3 Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Other
 GO:0003700 - transcription factor activity
GO:0006350 - transcription
GO:0009955 - adaxial/abaxial pattern formation
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010582 - floral meristem determinacy
GO:0009908 - flower development
GO:0005634 - nucleus
GO:0001708 - cell fate specification
GO:0009753 - response to jasmonic acid stimulus
GO:0043565 - sequence-specific DNA binding
GO:0048366 - leaf development
 TO:0000655 - leaf development trait
TO:0000657 - spikelet anatomy and morphology trait
TO:0000614 - lemma shape
TO:0000172 - jasmonic acid sensitivity
TO:0000370 - leaf width
TO:0002672 - auxin content
 PO:0020148 - shoot apical meristem
PO:0009005 - root
PO:0005352 - xylem
PO:0009037 - lemma
PO:0001050 - leaf development stage
PO:0009047 - stem
PO:0006022 - bundle sheath extension
PO:0009049 - inflorescence
PO:0000017 - vascular leaf primordium
PO:0020104 - leaf sheath
PO:0025034 - leaf
Os03g0109400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g01890.2
LOC_Os03g01890.1
HOX24 Oshox24
OsHox24
OsSLI1
OsHDZ6
OsHDZIP6
HDZ6
HDZIP6
 HOMEOBOX GENE 24 rice homeobox gene 24
Homeobox-leucine zipper protein HOX24
Homeodomain transcription factor HOX24
HD-ZIP protein HOX24
stress largely induced 1
homeodomain-leucine zipper transcription factor 6
OsHDZIP transcription factor 6
 2 Tolerance and resistance - Stress tolerance
Other
Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - panicle
 GO:0006970 - response to osmotic stress
GO:0009651 - response to salt stress
GO:0043565 - sequence-specific DNA binding
GO:0005634 - nucleus
GO:0009408 - response to heat
GO:0009628 - response to abiotic stimulus
GO:0009751 - response to salicylic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0003700 - transcription factor activity
GO:0010118 - stomatal movement
GO:0009269 - response to desiccation
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0006950 - response to stress
GO:0009733 - response to auxin stimulus
GO:0009409 - response to cold
 TO:0000516 - relative root length
TO:0000615 - abscisic acid sensitivity
TO:0000168 - abiotic stress trait
TO:0000507 - osmotic adjustment capacity
TO:0001016 - relative chlorophyll content
TO:0000163 - auxin sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000095 - osmotic response sensitivity
TO:0000259 - heat tolerance
TO:0000152 - panicle number
TO:0000346 - tiller number
 Os02g0649300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g43330.1
HAP2H OsHAP2H
NF-YA
CBF-B
NF-YA3
OsNF-YA3
NFYA3
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A3
NUCLEAR FACTOR-Y subunit NF-YA3
NF-YA transcription factor 3
NF-YA subunit 3
NF-YA family 3
 3 Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Other
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
 GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009753 - response to jasmonic acid stimulus
GO:0043565 - sequence-specific DNA binding
GO:0010728 - regulation of hydrogen peroxide biosynthetic process
GO:0009651 - response to salt stress
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0009740 - gibberellic acid mediated signaling
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0051607 - defense response to virus
GO:0090359 - negative regulation of abscisic acid biosynthetic process
GO:0006970 - response to osmotic stress
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0009788 - negative regulation of abscisic acid mediated signaling
GO:0009737 - response to abscisic acid stimulus
GO:0046345 - abscisic acid catabolic process
GO:0010119 - regulation of stomatal movement
GO:0051512 - positive regulation of unidimensional cell growth
GO:0006350 - transcription
GO:0047484 - regulation of response to osmotic stress
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0080006 - internode patterning
GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0030104 - water homeostasis
 TO:0002662 - leaf rolling tolerance
TO:0000145 - internode length
TO:0000136 - relative water content
TO:0000019 - seedling height
TO:0000605 - hydrogen peroxide content
TO:0000148 - viral disease resistance
TO:0002667 - abscisic acid content
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000357 - growth and development trait
TO:0006002 - proline content
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000520 - stomatal closure rate
 Os03g0647600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g44540.1
HAP2J OsHAP2J
NF-YA
CBF-B
NF-YA5
OsNF-YA5
NFYA5
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A5
NUCLEAR FACTOR-Y subunit NF-YA5
NF-YA transcription factor 5
NF-YA subunit 5
NF-YA family 5
NUCLEAR FACTOR-YA5
 7 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Other
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0005634 - nucleus
GO:0010150 - leaf senescence
GO:0045848 - positive regulation of nitrogen utilization
GO:0042594 - response to starvation
GO:0051607 - defense response to virus
GO:0016602 - CCAAT-binding factor complex
GO:0006995 - cellular response to nitrogen starvation
GO:0043565 - sequence-specific DNA binding
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000011 - nitrogen sensitivity
TO:0002673 - amino acid content
TO:0002759 - grain number
TO:0000153 - relative yield
TO:0000249 - leaf senescence
TO:0000590 - grain weight
TO:0001034 - relative plant height
TO:0000181 - seed weight
TO:0001016 - relative chlorophyll content
TO:0000148 - viral disease resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000495 - chlorophyll content
 PO:0009047 - stem
PO:0009005 - root
Os07g0158500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g06470.2
LOC_Os07g06470.1
DLT dlt
OsGRAS32
OsDLT
OsDLT1
DTL1
OsGRAS-32
OsGRAS32
GRAS-32
GRAS32
SMOS2/DLT
SMOS2
OsSMOS2
OsGS6
GS6
DLT/GS6/SMOS2
 DWARF AND LOW-TILLERING GRAS protein 32
SMALL ORGAN SIZE 2
 6 Vegetative organ - Root
Character as QTL - Plant growth activity
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Reproductive organ - Heading date
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Seed - Morphological traits
 GO:0010422 - regulation of brassinosteroid biosynthetic process
GO:0080006 - internode patterning
GO:0009742 - brassinosteroid mediated signaling
GO:0009741 - response to brassinosteroid stimulus
GO:0009734 - auxin mediated signaling pathway
GO:0010229 - inflorescence development
GO:0007275 - multicellular organismal development
GO:0051302 - regulation of cell division
GO:0008283 - cell proliferation
GO:0000226 - microtubule cytoskeleton organization
GO:0016131 - brassinosteroid metabolic process
GO:0005634 - nucleus
GO:0009755 - hormone-mediated signaling
GO:0010928 - regulation of auxin mediated signaling pathway
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006351 - transcription, DNA-dependent
 TO:0002616 - flowering time
TO:0000326 - leaf color
TO:0002637 - leaf size
TO:0000040 - panicle length
TO:0002688 - leaf lamina joint bending
TO:0000346 - tiller number
TO:0000011 - nitrogen sensitivity
TO:0002677 - brassinosteroid sensitivity
TO:0000152 - panicle number
TO:0000227 - root length
TO:0000145 - internode length
TO:0000621 - inflorescence development trait
TO:0000357 - growth and development trait
TO:0002676 - brassinosteroid content
TO:0001035 - stem width
TO:0000206 - leaf angle
TO:0000397 - grain size
TO:0002684 - plant cell size
TO:0000329 - tillering ability
TO:0002601 - stamen size
TO:0002602 - pistil size
TO:0000019 - seedling height
TO:0000207 - plant height
TO:0000391 - seed size
TO:0000576 - stem length
 PO:0001083 - inflorescence development stage
Os06g0127800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g03710.1
LIC OsC3H46
C3H46
OsLIC
OsFLA6
FLA6
OsC3H52
C3H52
 LEAF AND TILLER ANGLE INCREASED CONTROLLER Zinc finger CCCH domain-containing protein 46
LEAF and TILLER ANGLE INCREASED CONTROLLER
Flag leaf angle 6
CCCH Zinc Finger Family Gene 52
 6 Other
Reproductive organ - panicle
Character as QTL - Yield and productivity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0009742 - brassinosteroid mediated signaling
GO:0003677 - DNA binding
GO:0008270 - zinc ion binding
GO:0005634 - nucleus
GO:0009741 - response to brassinosteroid stimulus
GO:0005737 - cytoplasm
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005739 - mitochondrion
 TO:0000547 - primary branch number
TO:0000445 - seed number
TO:0002688 - leaf lamina joint bending
TO:0000207 - plant height
TO:0000124 - flag leaf angle
TO:0000449 - grain yield per plant
TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0000206 - leaf angle
TO:0002677 - brassinosteroid sensitivity
TO:0000040 - panicle length
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000567 - tiller angle
 Os06g0704300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g49080.1
NYC3 nyc3
OsNYC3
PPH
 NON-YELLOW COLORING 3 pheophytinase
 6 Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0016787 - hydrolase activity
GO:0010941 - regulation of cell death
GO:0050832 - defense response to fungus
GO:0015996 - chlorophyll catabolic process
GO:0080124 - pheophytinase activity
GO:0010150 - leaf senescence
GO:0009536 - plastid
GO:0009645 - response to low light intensity stimulus
 TO:0000447 - filled grain number
TO:0000326 - leaf color
TO:0000249 - leaf senescence
TO:0000074 - blast disease
TO:0000590 - grain weight
TO:0000340 - total soluble sugar content
TO:0000291 - carbohydrate content
TO:0000696 - starch content
TO:0000333 - sugar content
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000255 - sheath blight disease resistance
TO:0000207 - plant height
TO:0000605 - hydrogen peroxide content
TO:0000495 - chlorophyll content
TO:0000460 - light intensity sensitivity
 PO:0001054 - 4 leaf senescence stage
Os06g0354700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g24730.3
LOC_Os06g24730.2
LOC_Os06g24730.1
NOL nol
NOL1
OsNOL
OsNOL1
 NYC1-LIKE Non-Yellow Coloring 1 like
NYC1-like
"Chlorophyll(ide) b reductase NOL
chloroplastic"
Protein NON-YELLOW COLORING 1-LIKE
Protein NYC1-LIKE
Short-chain dehydrogenase/reductase NOL
 3 Biochemical character
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0005488 - binding
GO:0016491 - oxidoreductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0009535 - chloroplast thylakoid membrane
GO:0009536 - plastid
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0008152 - metabolic process
 TO:0000326 - leaf color
TO:0000495 - chlorophyll content
 Os03g0654600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g45194.1
HD3B Hd17
EF7
Ef7
OsELF3-1
ELF3-1
OsELF3
ELF3
ELF3_chr.6
OsELF3.1
ELF3.1
OsELF3a
ELF3a
 HEADING DATE 3B HEADING DATE 17
EARLINESS 7
EARLY FLOWERING 3-1
EARLY FLOWERING3.1
EARLY FLOWERING 3.1
ELF3 homolog 1
Heading date from Qingluzhan 11
EARLY FLOWERING3
 6 Tolerance and resistance - Disease resistance
Reproductive organ - Heading date
Vegetative organ - Leaf
Character as QTL - Yield and productivity
 GO:0009648 - photoperiodism
GO:0048576 - positive regulation of short-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0050832 - defense response to fungus
GO:0048573 - photoperiodism, flowering
GO:0031348 - negative regulation of defense response
GO:0007623 - circadian rhythm
GO:0048578 - positive regulation of long-day photoperiodism, flowering
GO:0009908 - flower development
 TO:0001034 - relative plant height
TO:0000229 - photoperiod sensitivity
TO:0000011 - nitrogen sensitivity
TO:0000153 - relative yield
TO:0000074 - blast disease
TO:0001032 - relative panicle number
TO:0000249 - leaf senescence
TO:0000396 - grain yield
TO:0000207 - plant height
TO:0002616 - flowering time
TO:0000137 - days to heading
TO:0000590 - grain weight
 PO:0025034 - leaf
PO:0009005 - root
PO:0001054 - 4 leaf senescence stage
PO:0009049 - inflorescence
PO:0009047 - stem
Os06g0142600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g05060.1
BT1-3 OsBT1-3
SLA
 BRITTLE 1-3 Brittle-1-3
seedling leaf albino
 6 Coloration - Chlorophyll
Biochemical character
Vegetative organ - Leaf
 GO:0016021 - integral to membrane
GO:0022857 - transmembrane transporter activity
GO:0005743 - mitochondrial inner membrane
GO:0009507 - chloroplast
GO:0015292 - uniporter activity
GO:0022891 - substrate-specific transmembrane transporter activity
GO:0009941 - chloroplast envelope
GO:0015853 - adenine transport
GO:0009658 - chloroplast organization
GO:0006839 - mitochondrial transport
GO:0005982 - starch metabolic process
 TO:0000326 - leaf color
TO:0002715 - chloroplast development trait
 Os06g0602700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40050.1
LOC_Os06g40050.2
EP2 ep2
EP2/DEP2/SRS1
SRS1/DEP2
DEP2
SRS1
OsSRS1
CL7(t)
OsRELA
RELA
SUG1
OsSUG1
 ERECT PANICLE 2 erect panical 2
Erect panicle2
erect panicle2-1
erect panicle2-2
dense and erect panicle 2
small and round seed 1
cleistogamy 7
cleistogamy gene on chromosome 7
regulator of leaf angle
suppressor of GS2AA 1
 7 Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Seed - Morphological traits - Grain shape
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
 GO:0050777 - negative regulation of immune response
GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0032491 - detection of molecule of fungal origin
GO:0002679 - respiratory burst during defense response
GO:0002221 - pattern recognition receptor signaling pathway
GO:0050832 - defense response to fungus
GO:0009742 - brassinosteroid mediated signaling
GO:0005737 - cytoplasm
GO:0009741 - response to brassinosteroid stimulus
GO:0010200 - response to chitin
GO:0001558 - regulation of cell growth
GO:0009739 - response to gibberellin stimulus
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009740 - gibberellic acid mediated signaling
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010422 - regulation of brassinosteroid biosynthetic process
 TO:0000050 - inflorescence branching
TO:0000074 - blast disease
TO:0002637 - leaf size
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0002677 - brassinosteroid sensitivity
TO:0000472 - vascular bundle number
TO:0002759 - grain number
TO:0000342 - panicle axis angle
TO:0000734 - grain length
TO:0000339 - stem thickness
TO:0000040 - panicle length
TO:0000207 - plant height
TO:0000557 - secondary branch number
TO:0000180 - spikelet fertility
TO:0000402 - grain width
TO:0000382 - 1000-seed weight
TO:0000051 - stem strength
TO:0002688 - leaf lamina joint bending
TO:0000166 - gibberellic acid sensitivity
TO:0000206 - leaf angle
TO:0002730 - grain shape
TO:0000399 - grain thickness
 PO:0009082 - spikelet floret
PO:0025034 - leaf
PO:0009037 - lemma
PO:0009049 - inflorescence
PO:0009038 - palea
PO:0001083 - inflorescence development stage
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0009005 - root
PO:0005020 - vascular bundle
Os07g0616000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g42410.1
LPS1 SDH2
SDHB
sdhB
RPS14
rps14
sdh2-1
SDH2-RPS14
OsLPS1
OsSDH2-1
 LATE PREMATURE SENESCENCE 1 SUCCINATE:UBIQUINONE OXIDOREDUCTASE
mitochondrial succinate dehydrogenase subunit B
ribosomal protein S14
succinate dehydrogenase (iron-sulphur protein subunit)
chimeric SDH2-RPS14
 8 Reproductive organ - Pollination, fertilization, fertility
Coloration - Chlorophyll
Coloration - Others
Character as QTL - Yield and productivity
Biochemical character
Reproductive organ - panicle
Vegetative organ - Culm
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0006099 - tricarboxylic acid cycle
GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0007005 - mitochondrion organization
GO:0009658 - chloroplast organization
GO:0009055 - electron carrier activity
GO:0000104 - succinate dehydrogenase activity
GO:0016491 - oxidoreductase activity
GO:0010150 - leaf senescence
GO:0005739 - mitochondrion
GO:0010229 - inflorescence development
 TO:0000293 - chlorophyll-a content
TO:0001015 - photosynthetic rate
TO:0000316 - photosynthetic ability
TO:0000040 - panicle length
TO:0000522 - stomatal conductance
TO:0000447 - filled grain number
TO:0002715 - chloroplast development trait
TO:0000639 - seed fertility
TO:0000621 - inflorescence development trait
TO:0000249 - leaf senescence
TO:0000396 - grain yield
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000605 - hydrogen peroxide content
TO:0000455 - seed set percent
TO:0006032 - panicle size
TO:0000496 - carotenoid content
TO:0000295 - chlorophyll-b content
 PO:0001083 - inflorescence development stage
PO:0000025 - root tip
PO:0025034 - leaf
PO:0001054 - 4 leaf senescence stage
PO:0009066 - anther
PO:0009072 - plant ovary
Os08g0120000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g02640.1
LOC_Os08g02640.2
LOC_Os08g02640.3
LOC_Os08g02640.4
LOC_Os08g02640.5
RIM1 ONAC054
ONAC54
NAC54
ONAC054alpha
ONAC054beta
 RICE DWARF VIRUS MULTIPLICATION 1 NAC domain-containing protein 054
NAC domain-containing protein 54
 3 Tolerance and resistance - Disease resistance
Vegetative organ - Root
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0003700 - transcription factor activity
GO:0009738 - abscisic acid mediated signaling
GO:0010150 - leaf senescence
GO:0009737 - response to abscisic acid stimulus
GO:0005634 - nucleus
GO:0009723 - response to ethylene stimulus
GO:0016021 - integral to membrane
 TO:0000207 - plant height
TO:0000249 - leaf senescence
TO:0000615 - abscisic acid sensitivity
TO:0002667 - abscisic acid content
TO:0000460 - light intensity sensitivity
TO:0000173 - ethylene sensitivity
TO:0000326 - leaf color
TO:0000495 - chlorophyll content
TO:0000316 - photosynthetic ability
TO:0000152 - panicle number
TO:0000172 - jasmonic acid sensitivity
TO:0000148 - viral disease resistance
TO:0000447 - filled grain number
TO:0000180 - spikelet fertility
TO:0000227 - root length
 PO:0001054 - 4 leaf senescence stage
Os03g0119966 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g02800.1
AOC OsAOC
AOC1
OsAOC1
HB
CPM2
OsAOC4
AOC4
 ALLENE OXIDE CYCLASE allene oxide cyclase
coleoptile photomorphogenesis 2
hebiba
hebibaAOC
 3 Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Biochemical character
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Tolerance and resistance - Insect resistance
Tolerance and resistance
Reproductive organ - Pollination, fertilization, fertility
 GO:0009408 - response to heat
GO:0009269 - response to desiccation
GO:0009617 - response to bacterium
GO:0002215 - defense response to nematode
GO:0016853 - isomerase activity
GO:0009695 - jasmonic acid biosynthetic process
GO:0009611 - response to wounding
GO:0009651 - response to salt stress
GO:0002213 - defense response to insect
GO:0009753 - response to jasmonic acid stimulus
GO:0009414 - response to water deprivation
GO:0010319 - stromule
GO:0009620 - response to fungus
GO:0080141 - regulation of jasmonic acid biosynthetic process
GO:0009409 - response to cold
GO:0009941 - chloroplast envelope
GO:0009535 - chloroplast thylakoid membrane
GO:0050832 - defense response to fungus
GO:0046423 - allene-oxide cyclase activity
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009570 - chloroplast stroma
GO:0005886 - plasma membrane
 TO:0000424 - brown planthopper resistance
TO:0000290 - flavonoid content
TO:0000172 - jasmonic acid sensitivity
TO:0000485 - sterility related trait
TO:0002668 - jasmonic acid content
TO:0001007 - coleoptile length
TO:0006001 - salt tolerance
TO:0000074 - blast disease
TO:0000403 - leaf-folder resistance
TO:0000384 - nematode damage resistance
TO:0000276 - drought tolerance
TO:0000259 - heat tolerance
TO:0000544 - mesocotyl length
TO:0000112 - disease resistance
TO:0000129 - false smut disease resistance
TO:0000357 - growth and development trait
TO:0000227 - root length
TO:0000207 - plant height
 PO:0009051 - spikelet
Os03g0438100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g32314.1
BU1 ILI4
OsILI4
OsBU1
BU1/ILI4
OsbHLH172
bHLH172
 BRASSINOSTEROID UPREGULATED 1 BRASSINOSTEROID UPREGULATED1
Increased Leaf Inclination4
BR upregulated 1
basic helix-loop-helix protein 172
 6 Seed - Morphological traits - Grain shape
Seed - Morphological traits
Character as QTL - Plant growth activity
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Culm
Vegetative organ - Leaf
Other
Character as QTL - Yield and productivity
 GO:0006355 - regulation of transcription, DNA-dependent
GO:0005737 - cytoplasm
GO:0009741 - response to brassinosteroid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0046983 - protein dimerization activity
GO:0040008 - regulation of growth
GO:0006351 - transcription, DNA-dependent
GO:0005634 - nucleus
GO:0009723 - response to ethylene stimulus
GO:0009753 - response to jasmonic acid stimulus
 TO:0000326 - leaf color
TO:0000492 - leaf shape
TO:0000590 - grain weight
TO:0000402 - grain width
TO:0002677 - brassinosteroid sensitivity
TO:0000206 - leaf angle
TO:0000734 - grain length
TO:0000397 - grain size
TO:0000145 - internode length
TO:0000207 - plant height
TO:0000361 - stem anatomy and morphology trait
TO:0000485 - sterility related trait
TO:0000357 - growth and development trait
TO:0002688 - leaf lamina joint bending
TO:0000172 - jasmonic acid sensitivity
TO:0000173 - ethylene sensitivity
 PO:0005052 - plant callus
Os06g0226500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g12210.1
COE1 coe1
 COMMISSURAL VEIN EXCESSIVE1 commissural vein excessive1
 8 Vegetative organ - Leaf
 Os08g0442700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g34380.1
LOC_Os08g34380.2
SP3 OsDof15
Dof15
OsDof-15
DOF15
DLT3
OsDLT3
 SHORT PANICLE 3 Dof zinc factor 15
Dof transcription factor 15
DNA BINDING WITH ONE FINGER 15
Short Panicle 3
DWARF AND LESS TILLERS ON CHROMOSOME 3
 3 Vegetative organ - Root
Other
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Reproductive organ - Panicle, Mode of branching
Reproductive organ - Heading date
Character as QTL - Yield and productivity
Vegetative organ - Leaf
 GO:0048573 - photoperiodism, flowering
GO:0009873 - ethylene mediated signaling pathway
GO:0009651 - response to salt stress
GO:0008284 - positive regulation of cell proliferation
GO:0010229 - inflorescence development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009690 - cytokinin metabolic process
GO:0010081 - regulation of inflorescence meristem growth
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0010082 - regulation of root meristem growth
 TO:0000547 - primary branch number
TO:0000132 - basal internode diameter
TO:0000227 - root length
TO:0002758 - flag leaf lamina width
TO:0000373 - inflorescence anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0000040 - panicle length
TO:0000173 - ethylene sensitivity
TO:0000434 - root activity
TO:0000371 - yield trait
TO:0006001 - salt tolerance
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000145 - internode length
TO:0000557 - secondary branch number
TO:0000734 - grain length
TO:0000207 - plant height
TO:0000592 - 1000-dehulled grain weight
TO:0002660 - cytokinin content
TO:0000456 - spikelet number
TO:0000050 - inflorescence branching
TO:0002692 - root meristem development
TO:0000397 - grain size
TO:0000455 - seed set percent
TO:0000346 - tiller number
TO:0000329 - tillering ability
TO:0006032 - panicle size
TO:0002616 - flowering time
TO:0000137 - days to heading
 PO:0004709 - axillary bud
PO:0009049 - inflorescence
Os03g0764900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g55610.1
SMG1 OsMKK4
MKK4
OsMKK4/SMG1
OsMAPKK4
MAPKK4
OsMEK4
MEK4
OsSMG1
SMG1/OsMEK6
OsMEK6
MEK6
OsSTS
STS
 SMALL GRAIN 1 MAPK kinase 4
mitogen-activated protein kinase kinase 4
small grain1
LARGE11
large grain 11
salt-tolerant and small grains
 2 Tolerance and resistance - Insect resistance
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Reproductive organ - Panicle, Mode of branching
Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Morphological traits
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
 GO:0016020 - membrane
GO:0009690 - cytokinin metabolic process
GO:0009611 - response to wounding
GO:0005737 - cytoplasm
GO:0009751 - response to salicylic acid stimulus
GO:0009651 - response to salt stress
GO:0006970 - response to osmotic stress
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0048364 - root development
GO:0009414 - response to water deprivation
GO:0005634 - nucleus
GO:0008283 - cell proliferation
GO:0009741 - response to brassinosteroid stimulus
GO:0042742 - defense response to bacterium
GO:0009737 - response to abscisic acid stimulus
GO:0000165 - MAPKKK cascade
GO:0010200 - response to chitin
GO:0010229 - inflorescence development
GO:0002213 - defense response to insect
GO:0009739 - response to gibberellin stimulus
GO:0080027 - response to herbivore
GO:0050832 - defense response to fungus
GO:0009738 - abscisic acid mediated signaling
GO:0009743 - response to carbohydrate stimulus
GO:0042127 - regulation of cell proliferation
GO:0009742 - brassinosteroid mediated signaling
GO:0009409 - response to cold
GO:0045595 - regulation of cell differentiation
 TO:0000040 - panicle length
TO:0000656 - root development trait
TO:0000163 - auxin sensitivity
TO:0001034 - relative plant height
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0000207 - plant height
TO:0000391 - seed size
TO:0000206 - leaf angle
TO:0000454 - stem borer resistance
TO:0000621 - inflorescence development trait
TO:0000303 - cold tolerance
TO:0000439 - fungal disease resistance
TO:0000074 - blast disease
TO:0000175 - bacterial blight disease resistance
TO:0002660 - cytokinin content
TO:0000516 - relative root length
TO:0000167 - cytokinin sensitivity
TO:0000382 - 1000-seed weight
TO:0000615 - abscisic acid sensitivity
TO:0002677 - brassinosteroid sensitivity
TO:0000557 - secondary branch number
TO:0002669 - diterpenoid phytoalexin content
TO:0000547 - primary branch number
TO:0000455 - seed set percent
TO:0000342 - panicle axis angle
TO:0000590 - grain weight
TO:0000447 - filled grain number
TO:0000734 - grain length
TO:0000456 - spikelet number
TO:0002759 - grain number
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000160 - UV light sensitivity
TO:0000095 - osmotic response sensitivity
 PO:0007520 - root development stage
PO:0020104 - leaf sheath
PO:0025034 - leaf
PO:0001083 - inflorescence development stage
Os02g0787300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g54600.1
CLF OsSET24
SET24
OsSDG711
SDG711
EZ1
OsEZ1
OsCLF
OsPcG1
PcG1
 CURLY LEAF SET protein 24
polycomb protein EZ1
SET DOMAIN GROUP 711
Polycomb group protein 1
 6 Reproductive organ - panicle
Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Biochemical character
Character as QTL - Plant growth activity
Seed - Morphological traits - Endosperm
Seed - Morphological traits
Seed - Physiological traits - Storage substances
Vegetative organ - Leaf
Seed
Other
 GO:0009960 - endosperm development
GO:0009823 - cytokinin catabolic process
GO:0048316 - seed development
GO:0001558 - regulation of cell growth
GO:0003677 - DNA binding
GO:0040014 - regulation of multicellular organism growth
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0009651 - response to salt stress
GO:0006306 - DNA methylation
GO:0010048 - vernalization response
GO:0009908 - flower development
GO:0042127 - regulation of cell proliferation
GO:0031047 - gene silencing by RNA
GO:0045857 - negative regulation of molecular function, epigenetic
GO:0051567 - histone H3-K9 methylation
GO:0040029 - regulation of gene expression, epigenetic
GO:0009965 - leaf morphogenesis
GO:0005634 - nucleus
GO:0031519 - PcG protein complex
GO:0003700 - transcription factor activity
GO:0009690 - cytokinin metabolic process
GO:0009294 - DNA mediated transformation
GO:0034968 - histone lysine methylation
GO:0003727 - single-stranded RNA binding
GO:0006349 - genetic imprinting
GO:0048574 - long-day photoperiodism, flowering
GO:0046976 - histone methyltransferase activity (H3-K27 specific)
GO:0009691 - cytokinin biosynthetic process
GO:0010228 - vegetative to reproductive phase transition
GO:0016571 - histone methylation
GO:0005982 - starch metabolic process
GO:0010229 - inflorescence development
 TO:0002637 - leaf size
TO:0000539 - large vascular bundle number
TO:0000357 - growth and development trait
TO:0000558 - small vascular bundle number
TO:0002758 - flag leaf lamina width
TO:0000132 - basal internode diameter
TO:0000145 - internode length
TO:0000590 - grain weight
TO:0000152 - panicle number
TO:0000040 - panicle length
TO:0002660 - cytokinin content
TO:0000397 - grain size
TO:0000339 - stem thickness
TO:0000207 - plant height
TO:0006001 - salt tolerance
TO:0000621 - inflorescence development trait
TO:0002616 - flowering time
TO:0006032 - panicle size
TO:0000653 - seed development trait
TO:0000696 - starch content
TO:0000391 - seed size
TO:0000231 - endospermless
 PO:0007633 - endosperm development stage
PO:0001170 - seed development stage
PO:0009089 - endosperm
PO:0000230 - inflorescence meristem
PO:0020056 - tegmen
PO:0001083 - inflorescence development stage
Os06g0275500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g16390.1
WFP OsSPL14
SPL14
IPA1
WFP/IPA1
OsSPL14/WFP/IPA1
OsIPA1
IPA1/OsSPL14
 WEALTHY FARMER'S PANICLE IDEAL PLANT ARCHITECTURE 1
Ideal Plant Architecture 1
Ideal Plant Architecture1
Squamosa promoter-binding-like protein 14
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14
Squamosa promoter binding protein like-14
IDEAL PLANT ARCHITECTURE1
 8 Seed
Character as QTL - Yield and productivity
Vegetative organ - Culm
Vegetative organ - Leaf
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Vegetative organ - Root
Character as QTL - Germination
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
Reproductive organ - Panicle, Mode of branching
Seed - Physiological traits - Dormancy
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
 GO:0003677 - DNA binding
GO:0010187 - negative regulation of seed germination
GO:0009740 - gibberellic acid mediated signaling
GO:0005634 - nucleus
GO:0048366 - leaf development
GO:0010116 - positive regulation of abscisic acid biosynthetic process
GO:0045449 - regulation of transcription
GO:0009960 - endosperm development
GO:0048623 - seed germination on parent plant
GO:0010231 - maintenance of seed dormancy
GO:0009607 - response to biotic stimulus
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0048506 - regulation of timing of meristematic phase transition
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009651 - response to salt stress
GO:0010081 - regulation of inflorescence meristem growth
GO:0009755 - hormone-mediated signaling
GO:0010432 - bract development
GO:0005982 - starch metabolic process
GO:0009409 - response to cold
GO:0060359 - response to ammonium ion
GO:0009736 - cytokinin mediated signaling
GO:0050832 - defense response to fungus
GO:0009626 - plant-type hypersensitive response
GO:0010050 - vegetative phase change
GO:0010162 - seed dormancy
GO:0048316 - seed development
GO:0045487 - gibberellin catabolic process
GO:0042742 - defense response to bacterium
GO:0048364 - root development
GO:0010229 - inflorescence development
 TO:0002759 - grain number
TO:0006001 - salt tolerance
TO:0000340 - total soluble sugar content
TO:0002637 - leaf size
TO:0000653 - seed development trait
TO:0000621 - inflorescence development trait
TO:0002689 - leaf sheath length
TO:0002675 - gibberellic acid content
TO:0000017 - anatomy and morphology related trait
TO:0000396 - grain yield
TO:0000329 - tillering ability
TO:0000166 - gibberellic acid sensitivity
TO:0000586 - seminal root length
TO:0000050 - inflorescence branching
TO:0000346 - tiller number
TO:0002685 - crown root number
TO:0000011 - nitrogen sensitivity
TO:0000152 - panicle number
TO:0000455 - seed set percent
TO:0000357 - growth and development trait
TO:0000135 - leaf length
TO:0000619 - vivipary
TO:0000179 - biotic stress trait
TO:0000253 - seed dormancy
TO:0000227 - root length
TO:0000656 - root development trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000696 - starch content
TO:0002653 - endosperm storage protein content
TO:0000447 - filled grain number
TO:0000547 - primary branch number
TO:0000303 - cold tolerance
TO:0000222 - head rice
TO:0000104 - floury endosperm
TO:0000487 - endosperm color
TO:0000109 - endosperm storage protein-2 content
TO:0000175 - bacterial blight disease resistance
TO:0000107 - endosperm storage protein-1 content
TO:0000456 - spikelet number
TO:0000074 - blast disease
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0025487 - bract primordium
PO:0007057 - 0 seed germination stage
PO:0001083 - inflorescence development stage
PO:0007520 - root development stage
Os08g0509600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g39890.1
qFLL9 qFLL9
 FLAG LEAF LENGTH 9 9 Vegetative organ - Leaf
Character as QTL - Plant growth activity
 -
EP3 EP3/LP
LP
OsLP
OsFbox076
OsFbox76
Os_F0106
OsEP3
OsFBK5
FBK5
 ERECT PANICLE 3 LARGER PANICLE
F-box protein 76
F-box-type E3 ubiquitin ligase K5
 2 Reproductive organ - Panicle, Mode of branching
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
 GO:0010118 - stomatal movement
GO:0005634 - nucleus
GO:0010052 - guard cell differentiation
GO:0009760 - C4 photosynthesis
GO:0005737 - cytoplasm
GO:0009908 - flower development
GO:0010229 - inflorescence development
GO:0048437 - floral organ development
GO:0048513 - organ development
GO:0048316 - seed development
 TO:0000625 - spikelet density
TO:0006013 - carpel number
TO:0000357 - growth and development trait
TO:0000622 - flower development trait
TO:0000421 - pollen fertility
TO:0000371 - yield trait
TO:0000621 - inflorescence development trait
TO:0000653 - seed development trait
TO:0002600 - flower organ size
TO:0006038 - floral organ number
TO:0000397 - grain size
TO:0000590 - grain weight
TO:0000207 - plant height
TO:0000135 - leaf length
TO:0000370 - leaf width
TO:0006022 - floral organ development trait
TO:0000040 - panicle length
TO:0000447 - filled grain number
TO:0000734 - grain length
TO:0000269 - 100-seed weight
TO:0000391 - seed size
TO:0006029 - glume number
TO:0002759 - grain number
TO:0000396 - grain yield
TO:0000225 - stamen number
TO:0000050 - inflorescence branching
TO:0002768 - spikelet length
TO:0000564 - spikelet width
TO:0000531 - anther length
 PO:0025034 - leaf
PO:0004010 - meristematic cell
PO:0006023 - bundle sheath
PO:0009046 - flower
PO:0001170 - seed development stage
PO:0009010 - seed
PO:0009066 - anther
PO:0025281 - pollen
PO:0025585 - floral organ formation stage
PO:0001083 - inflorescence development stage
PO:0007615 - flower development stage
PO:0020127 - primary root
PO:0009013 - portion of meristem tissue
PO:0025178 - stem epidermis
PO:0009072 - plant ovary
PO:0020123 - root cap
PO:0009047 - stem
PO:0006036 - root epidermis
PO:0009005 - root
Os02g0260200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15950.1
APX7 OsAPx7
OsAPx07
OSAPX7
APx7
sAPX
 ASCORBATE PEROXIDASE 7 ascorbate peroxidase 7
stromal Ascorbate Peroxidase
 4 Tolerance and resistance - Stress tolerance
Biochemical character
Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
 GO:0034059 - response to anoxia
GO:0009570 - chloroplast stroma
GO:0009579 - thylakoid
GO:0010118 - stomatal movement
GO:0016688 - L-ascorbate peroxidase activity
GO:0009536 - plastid
GO:0006801 - superoxide metabolic process
GO:0042742 - defense response to bacterium
GO:0042744 - hydrogen peroxide catabolic process
GO:0020037 - heme binding
GO:0009414 - response to water deprivation
GO:0030104 - water homeostasis
GO:0009651 - response to salt stress
GO:0055114 - oxidation reduction
 TO:0000175 - bacterial blight disease resistance
TO:0002657 - oxidative stress
TO:0000136 - relative water content
TO:0006001 - salt tolerance
TO:0000504 - leaf temperature
TO:0001017 - water use efficiency
TO:0000015 - oxygen sensitivity
TO:0000276 - drought tolerance
 Os04g0434800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g35520.4
LOC_Os04g35520.3
LOC_Os04g35520.2
LOC_Os04g35520.1
PIN5B PIN5C
OsPIN5c
OsPIN5b
PIN4
 PIN PROTEIN 5B PIN PROTEIN 5C
PROBABLE AUXIN EFFLUX CARRIER COMPONENT 5C
 8 Character as QTL - Yield and productivity
Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Reproductive organ - panicle
 GO:0009415 - response to water
GO:0055085 - transmembrane transport
GO:0010252 - auxin homeostasis
GO:0005783 - endoplasmic reticulum
GO:0016021 - integral to membrane
 TO:0000207 - plant height
TO:0000470 - vascular tissue related trait
TO:0000040 - panicle length
TO:0000241 - leaf number
TO:0000237 - water stress trait
TO:0000455 - seed set percent
TO:0000371 - yield trait
TO:0000346 - tiller number
TO:0002681 - leaf curling
TO:0002672 - auxin content
 PO:0025424 - vascular tissue development stage
Os08g0529000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g41720.1
D17 d17(t)
dwf14
d17
htd1
OsCCD7
CCD7
D17/HTD1
HTD1
OsHTD1
OsD17
 DWARF SLENDER DWARF, TILLERING slender dwarf
tillering dwarf
dwarf-17
high-tillering dwarf1
high-tillering dwarf 1
High-Tillering Dwarf1
High-Tillering Dwarf 1
high tillering and dwarf 1
catotenoid dioxygenase 7
carotenoid-cleaving dioxygenase 7
carotenoid cleavage dioxygenase 7
MAX3 ortholog
 4 Vegetative organ - Culm
Reproductive organ - Pollination, fertilization, fertility
Character as QTL - Yield and productivity
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0009507 - chloroplast
GO:0009733 - response to auxin stimulus
GO:0016121 - carotene catabolic process
GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity
GO:0009737 - response to abscisic acid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009735 - response to cytokinin stimulus
GO:0042594 - response to starvation
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0010223 - secondary shoot formation
GO:0007275 - multicellular organismal development
GO:0046872 - metal ion binding
GO:0046685 - response to arsenic
 TO:0000172 - jasmonic acid sensitivity
TO:0000011 - nitrogen sensitivity
TO:0000326 - leaf color
TO:0000136 - relative water content
TO:0001016 - relative chlorophyll content
TO:0000180 - spikelet fertility
TO:0000605 - hydrogen peroxide content
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0002688 - leaf lamina joint bending
TO:0000167 - cytokinin sensitivity
TO:0000163 - auxin sensitivity
TO:0000089 - panicle type
TO:0000401 - plant growth hormone sensitivity
TO:0000576 - stem length
TO:0000370 - leaf width
TO:0000152 - panicle number
TO:0000615 - abscisic acid sensitivity
TO:0000492 - leaf shape
 PO:0006023 - bundle sheath
PO:0009005 - root
PO:0009006 - shoot system
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0004709 - axillary bud
PO:0007073 - 2 formation of axillary shoot stage
PO:0009047 - stem
PO:0005001 - basal axillary shoot system
Os04g0550600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g46470.1
GL2 gl2
 GLABROUS LEAF AND HULL 2 glabrous leaf and hull2
glabrous leaf and hull 2
glabrous leaf and hull-2
 Vegetative organ - Leaf
 GO:0030154 - cell differentiation
 TO:0000055 - leaf lamina pubescence
TO:0000417 - lemma and palea pubescence
 PO:0009038 - palea
PO:0009037 - lemma
PO:0020039 - leaf lamina
-
HLB Hlb
Hl2
 HAIRY LEAF-B Hairy leaf-b
Hairy leaf-2
 Vegetative organ - Leaf
 GO:0030154 - cell differentiation
 TO:0000055 - leaf lamina pubescence
 PO:0020039 - leaf lamina
-
PLA1 pla1
OsPLA1
plt1
CYP78A11
 PLASTOCHRON 1 plastochron1
plastochron 1
plastochron-1
Cytochrome P450 78A11
Protein PLASTOCHRON1
 10 Coloration - Anthocyanin
Seed - Morphological traits - Grain shape
Heterochrony
Reproductive organ - panicle
Vegetative organ - Leaf
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
 GO:0010228 - vegetative to reproductive phase transition
GO:0010432 - bract development
GO:0051781 - positive regulation of cell division
GO:0055114 - oxidation reduction
GO:0004497 - monooxygenase activity
GO:0007275 - multicellular organismal development
GO:0009055 - electron carrier activity
GO:0010229 - inflorescence development
GO:0020037 - heme binding
GO:0048366 - leaf development
GO:0009740 - gibberellic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
 TO:0000369 - vegetative growth time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000346 - tiller number
TO:0000391 - seed size
TO:0002638 - shoot meristem development
TO:0000659 - phyllochron
TO:0000166 - gibberellic acid sensitivity
TO:0000050 - inflorescence branching
TO:0000730 - mitotic cell cycle trait
 PO:0020122 - inflorescence axis
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
Os10g0403000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g26340.1
image Id ( 6707 )
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/rice/oryzabase