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Search Condition : Filter(traitClassFacetEn:003_Vegetative organ - Shoot apical meristem(SAM))
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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
AGO1A OsAGO1a
AGO1a
AGO10
AGO1-1
 ARGONAUTE 1A Protein argonaute 1A
Argonaute 10
 2 Other
Vegetative organ - Shoot apical meristem(SAM)
 GO:0031047 - gene silencing by RNA
GO:0003676 - nucleic acid binding
 TO:0006020 - shoot apical meristem development
 Os02g0672200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g45070.2
LOC_Os02g45070.1
SHD Shd(t)*
Shd
 SHOOT DIFFERENTIATION FROM SEED-CALLUS Shoot differentiation from seed-callus
Shoot differentiation from seed callus
 Vegetative organ - Shoot apical meristem(SAM)
 GO:0009790 - embryonic development
 TO:0000243 - invitro regeneration ability
 PO:0000003 - whole plant
PO:0009011 - plant structure
-
SHO1 sho1
DCL4
OsDCL4
Os DCL4
Dcl4
 SHOOT ORGANIZATION 1 shoot organization 1
shoot organization-1
shoot organization1
Endoribonuclease Dicer homolog 4
Dicer-like protein 4
Protein SHOOT ORGANIZATION 1
Oryza sativa dicer-like4
Oryza sativa dicer-like 4
Dicer like 4
 4 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Vegetative organ - Shoot apical meristem(SAM)
Seed - Morphological traits - Embryo
 GO:0009887 - organ morphogenesis
GO:0005634 - nucleus
GO:0009408 - response to heat
GO:0042742 - defense response to bacterium
GO:0050832 - defense response to fungus
GO:0048608 - reproductive structure development
GO:0004252 - serine-type endopeptidase activity
GO:0007275 - multicellular organismal development
GO:0009888 - tissue development
GO:0010267 - production of ta-siRNAs involved in RNA interference
GO:0009944 - polarity specification of adaxial/abaxial axis
GO:0010492 - maintenance of shoot apical meristem identity
GO:0030145 - manganese ion binding
GO:0008026 - ATP-dependent helicase activity
GO:0000287 - magnesium ion binding
GO:0003725 - double-stranded RNA binding
GO:0004525 - ribonuclease III activity
GO:0005524 - ATP binding
 TO:0000175 - bacterial blight disease resistance
TO:0000064 - embryo related trait
TO:0000492 - leaf shape
TO:0000074 - blast disease
TO:0000605 - hydrogen peroxide content
TO:0000259 - heat tolerance
 PO:0009009 - plant embryo
PO:0009025 - vascular leaf
PO:0025034 - leaf
Os04g0509300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g43050.4
LOC_Os04g43050.1
image Id ( 6752 )
BGL bgl
OsRopGEF10
Os RopGEF10
RopGEF10
OsGEF21
GEF21
SPD25
OsSPD25
 BRIGHT GREEN LEAF bright green leaf
guanine nucleotide exchange factor for Rop 10
GEF for ROP 10
Rop-specific GEF10
Rop-specific guanine nucleotide exchange factor 10
Guanine nucleotide exchange factor 21
small papilla deficient 25
 5 Vegetative organ - Culm
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - panicle
 GO:0010119 - regulation of stomatal movement
GO:0010109 - regulation of photosynthesis
GO:0030104 - water homeostasis
GO:0015977 - carbon utilization by fixation of carbon dioxide
GO:0010229 - inflorescence development
GO:0005886 - plasma membrane
GO:0009735 - response to cytokinin stimulus
GO:0048367 - shoot development
GO:0080037 - negative regulation of cytokinin mediated signaling
GO:0005089 - Rho guanyl-nucleotide exchange factor activity
GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000696 - starch content
TO:0000299 - leaf lamina color
TO:0000547 - primary branch number
TO:0000456 - spikelet number
TO:0000734 - grain length
TO:0000207 - plant height
TO:0006032 - panicle size
TO:0000449 - grain yield per plant
TO:0000447 - filled grain number
TO:0000654 - shoot development trait
TO:0001017 - water use efficiency
TO:0000136 - relative water content
TO:0001015 - photosynthetic rate
TO:0000522 - stomatal conductance
TO:0000455 - seed set percent
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0002658 - starch grain synthesis
TO:0000495 - chlorophyll content
TO:0000504 - leaf temperature
TO:0000709 - leaf gloss
TO:0001018 - transpiration rate
TO:0000316 - photosynthetic ability
TO:0000621 - inflorescence development trait
TO:0006020 - shoot apical meristem development
TO:0002759 - grain number
TO:0000397 - grain size
TO:0000167 - cytokinin sensitivity
 PO:0025477 - floral organ primordium
PO:0009025 - vascular leaf
PO:0001083 - inflorescence development stage
PO:0009006 - shoot system
PO:0020148 - shoot apical meristem
PO:0000230 - inflorescence meristem
PO:0009009 - plant embryo
PO:0009051 - spikelet
PO:0025395 - floral organ
PO:0009039 - glume
PO:0009030 - carpel
PO:0025527 - shoot system development stage
Os05g0454200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g38000.1
LOC_Os05g38000.2
image Id ( 6765 )
UR1 Ur1
 UNDULATE RACHIS 1 Undulate rachis1
Undulate rachis 1
Undulate rachis-1
 6 Vegetative organ - Shoot apical meristem(SAM)
 GO:0007275 - multicellular organismal development
 TO:0000342 - panicle axis angle
 -
UR2 ur2
 UNDULATE RACHIS 2 undulate rachis2
undulate rachis 2
undulate rachis-2
 8 Vegetative organ - Shoot apical meristem(SAM)
 GO:0007275 - multicellular organismal development
 TO:0000342 - panicle axis angle
 - image Id ( 6784 )
SHL2 shl2
SHL2
sh2
OsRDR6
RDR6
DEL
OsDEL
 SHOOTLESS 2 shootless 2
shootless-2
Probable RNA-dependent RNA polymerase SHL2
Protein SHOOTLESS 2
SHOOTLESS2
RNA-dependent RNA polymerase 6
rod-like lemma
DEGENERATED LEMMA
 1 Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility - Sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Spikelet, flower, glume, awn
 GO:0042742 - defense response to bacterium
GO:0009408 - response to heat
GO:0010093 - specification of floral organ identity
GO:0010229 - inflorescence development
GO:0051607 - defense response to virus
GO:0006950 - response to stress
GO:0009266 - response to temperature stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0030422 - production of siRNA involved in RNA interference
GO:0031047 - gene silencing by RNA
GO:0003723 - RNA binding
GO:0003968 - RNA-directed RNA polymerase activity
GO:0005739 - mitochondrion
GO:0009888 - tissue development
GO:0016246 - RNA interference
GO:0009887 - organ morphogenesis
GO:0042138 - meiotic DNA double-strand break formation
GO:0006306 - DNA methylation
GO:0010492 - maintenance of shoot apical meristem identity
 TO:0000274 - floret anatomy and morphology trait
TO:0000557 - secondary branch number
TO:0000455 - seed set percent
TO:0000622 - flower development trait
TO:0000402 - grain width
TO:0000734 - grain length
TO:0002718 - awn anatomy and morphology trait
TO:0000614 - lemma shape
TO:0000259 - heat tolerance
TO:0000975 - grain width
TO:0000605 - hydrogen peroxide content
TO:0000175 - bacterial blight disease resistance
TO:0000567 - tiller angle
TO:0000040 - panicle length
TO:0000148 - viral disease resistance
TO:0000657 - spikelet anatomy and morphology trait
TO:0002759 - grain number
TO:0000615 - abscisic acid sensitivity
TO:0000396 - grain yield
TO:0000485 - sterility related trait
TO:0000592 - 1000-dehulled grain weight
TO:0000064 - embryo related trait
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000164 - stress trait
TO:0000432 - temperature response trait
TO:0000382 - 1000-seed weight
TO:0002730 - grain shape
 PO:0020144 - apical meristem
PO:0009051 - spikelet
PO:0009082 - spikelet floret
PO:0001083 - inflorescence development stage
PO:0009009 - plant embryo
Os01g0527600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g34350.1
image Id ( 6807 )
SHL4 shl4
sh4
OsAGO7
SHO2
AGO7
SHL4/SHO2
OsSHL4
OsSHO2
TFS1
OsTFS1
 SHOOTLESS 4 shootless 4
shootless-4
Protein argonaute 7
Protein SHOOTLESS 4
Protein SHOOT ORGANIZATION 2
SHOOT ORGANIZATION2
ARGONAUTE 7
Argonaute 7
thermo-sensitive female sterility 1
 3 Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0070922 - small RNA loading onto RISC
GO:0009888 - tissue development
GO:0009408 - response to heat
GO:0009887 - organ morphogenesis
GO:0030422 - production of siRNA involved in RNA interference
GO:0003676 - nucleic acid binding
GO:0009266 - response to temperature stimulus
GO:0010492 - maintenance of shoot apical meristem identity
GO:0016246 - RNA interference
 TO:0000432 - temperature response trait
TO:0000455 - seed set percent
TO:0000064 - embryo related trait
TO:0000358 - female sterility
TO:0002681 - leaf curling
TO:0000259 - heat tolerance
TO:0000206 - leaf angle
 PO:0009009 - plant embryo
PO:0020144 - apical meristem
Os03g0449200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g33650.1
image Id ( 6809 )
FSM fsm
 FLATTENED SHOOT MERISTEM flattered shoot meristem
 1 Vegetative organ - Shoot apical meristem(SAM)
 GO:0010492 - maintenance of shoot apical meristem identity
 -
GAE1 OsGAE1
 GA-ENHANCED GENE 1 gibberellin-regulated gene
GA-enhanced gene 1
 1 Vegetative organ - Culm
Character as QTL - Plant growth activity
Vegetative organ - Shoot apical meristem(SAM)
 GO:0010476 - gibberellin-mediated signaling
GO:0009739 - response to gibberellin stimulus
GO:0048608 - reproductive structure development
 TO:0000357 - growth and development trait
TO:0000207 - plant height
TO:0000166 - gibberellic acid sensitivity
 PO:0020104 - leaf sheath
PO:0020148 - shoot apical meristem
PO:0005052 - plant callus
PO:0025034 - leaf
Os01g0201600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10490.1
OSKN2 OsKn2
OsH71
HOS9
OSH71
OSH71/Oskn2
 KNOX PROTEIN 2 KNOX protein 2
Oryza sativa homeobox71
Homeobox protein knotted-1-like 10
Homeobox protein OSH71
Homeobox protein HOS9
Homeobox protein knotted-1-like 2
Rice KNOX gene-71
 5 Character as QTL - Germination
Reproductive organ - Heading date
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Seed - Physiological traits - Shattering
Vegetative organ - Culm
 GO:0016020 - membrane
GO:0009629 - response to gravity
GO:0009845 - seed germination
GO:0005783 - endoplasmic reticulum
GO:0010229 - inflorescence development
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009413 - response to flooding
GO:0030912 - response to deep water
GO:0005737 - cytoplasm
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0060867 - fruit abscission
 TO:0002729 - fruit senescing quality trait
TO:0000492 - leaf shape
TO:0000524 - submergence tolerance
TO:0002616 - flowering time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0002693 - gravity response trait
TO:0000473 - grain shattering
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0007057 - 0 seed germination stage
PO:0000146 - abscission zone
PO:0007045 - coleoptile emergence stage
PO:0025034 - leaf
Os05g0129700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g03884.1
NAM OsNAM
OMTN5
ONAC092
ONAC92
NAC92
CUC2
OsNAM/CUC2
DLN165
OsDLN165
OsCUC1
CUC1
OsNAM/ OMTN5
OsNAM1
NAM1
 NO APICAL MERISTEM no apical meristem
Petunia NO APICAL MERISTEM ortholog
miR164-targeted NAC5
Oryza miR164-targeted NAC5
NAC domain-containing protein 092
NAC domain-containing protein 92
DLN repressor 165
DLN motif protein 165
CUP-SHAPED COTYLEDON 1
 6 Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Spikelet, flower, glume, awn
 GO:0009790 - embryonic development
GO:0005634 - nucleus
GO:0048508 - embryonic meristem development
GO:0003677 - DNA binding
GO:0045449 - regulation of transcription
GO:0010492 - maintenance of shoot apical meristem identity
GO:0010199 - organ boundary specification between lateral organs and the meristem
GO:0048437 - floral organ development
GO:0048366 - leaf development
GO:0010229 - inflorescence development
GO:0009791 - post-embryonic development
GO:0048497 - maintenance of floral organ identity
GO:0010093 - specification of floral organ identity
GO:0010450 - inflorescence meristem growth
GO:0048507 - meristem development
 TO:0000657 - spikelet anatomy and morphology trait
TO:0006016 - meristem tissue development trait
TO:0006022 - floral organ development trait
TO:0006020 - shoot apical meristem development
TO:0000655 - leaf development trait
TO:0000557 - secondary branch number
TO:0000437 - male sterility
TO:0000547 - primary branch number
TO:0000670 - floret number
TO:0000040 - panicle length
TO:0000274 - floret anatomy and morphology trait
TO:0000276 - drought tolerance
TO:0000225 - stamen number
TO:0000207 - plant height
TO:0006019 - floral organ identity
TO:0000145 - internode length
TO:0000050 - inflorescence branching
TO:0000135 - leaf length
TO:0002689 - leaf sheath length
TO:0000215 - stamen anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0006038 - floral organ number
TO:0006032 - panicle size
TO:0000455 - seed set percent
TO:0020034 - glume width
TO:0006010 - lodicule number
 PO:0025034 - leaf
PO:0009030 - carpel
PO:0025142 - leaf tip
PO:0005020 - vascular bundle
PO:0009038 - palea
PO:0020033 - coleoptile
PO:0025082 - reproductive shoot system
PO:0009010 - seed
PO:0009082 - spikelet floret
PO:0009049 - inflorescence
PO:0009029 - stamen
PO:0001050 - leaf development stage
PO:0025585 - floral organ formation stage
PO:0009037 - lemma
PO:0020103 - flag leaf
PO:0020148 - shoot apical meristem
PO:0009005 - root
PO:0009055 - bract
PO:0001083 - inflorescence development stage
Os06g0344900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g23650.1
LOG1 OsLOG1
LOG
Log
log
OsLOG
 LONELY GUY 1 LONELY GUY
Lonely Guy
lonely guy
Protein LONELY GUY
Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
 1 Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Panicle, Mode of branching
Seed - Morphological traits - Grain shape
 GO:0010073 - meristem maintenance
GO:0009736 - cytokinin mediated signaling
GO:0009536 - plastid
GO:0048608 - reproductive structure development
GO:0009691 - cytokinin biosynthetic process
GO:0010083 - regulation of vegetative meristem growth
GO:0010076 - maintenance of floral meristem identity
GO:0010077 - maintenance of inflorescence meristem identity
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0010074 - maintenance of meristem identity
GO:0048509 - regulation of meristem development
GO:0048832 - specification of organ number
 TO:0006022 - floral organ development trait
TO:0006032 - panicle size
TO:0000447 - filled grain number
TO:0000919 - grain weight
TO:0000040 - panicle length
TO:0002659 - pistil number
TO:0000017 - anatomy and morphology related trait
TO:0000050 - inflorescence branching
TO:0000089 - panicle type
TO:0002660 - cytokinin content
TO:0000590 - grain weight
TO:0002759 - grain number
 PO:0025530 - reproductive shoot system development stage
PO:0000229 - flower meristem
PO:0009105 - inflorescence branch meristem
PO:0000230 - inflorescence meristem
Os01g0588900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g40630.1
LOC_Os01g40630.2
LOC_Os01g40630.3
LDP1 OsLDP1
 LARGE AND DENSE PANICLE 1 large and dense panicle 1
 7 Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Reproductive organ - panicle
 GO:0010600 - regulation of auxin biosynthetic process
GO:0010229 - inflorescence development
GO:0006568 - tryptophan metabolic process
GO:0009734 - auxin mediated signaling pathway
 TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0006020 - shoot apical meristem development
TO:0000040 - panicle length
TO:0006016 - meristem tissue development trait
TO:0000547 - primary branch number
TO:0000621 - inflorescence development trait
TO:0000449 - grain yield per plant
 PO:0001083 - inflorescence development stage
-
ABCB23 OsABCB23
OsISC32
OsATM3
ATM3
 ABC TRANSPORTER B FAMILY MEMBER 23 ABC transporter superfamily ABCB subgroup member 23
Iron-sulfur cluster protein 32
ABC transporter of mitochondrion 3
 6 Vegetative organ - Root
Vegetative organ - Culm
Biochemical character
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
 GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0055072 - iron ion homeostasis
GO:0051301 - cell division
GO:0048527 - lateral root development
GO:0005524 - ATP binding
GO:0048364 - root development
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process
GO:0006879 - cellular iron ion homeostasis
GO:0016021 - integral to membrane
GO:0042626 - ATPase activity, coupled to transmembrane movement of substances
GO:0045787 - positive regulation of cell cycle
GO:0016226 - iron-sulfur cluster assembly
GO:0010431 - seed maturation
GO:0010073 - meristem maintenance
GO:0006801 - superoxide metabolic process
GO:0006749 - glutathione metabolic process
GO:0006281 - DNA repair
GO:0005743 - mitochondrial inner membrane
GO:0046686 - response to cadmium ion
GO:0040014 - regulation of multicellular organism growth
GO:0010288 - response to lead ion
GO:0009941 - chloroplast envelope
GO:0009555 - pollen development
GO:0009658 - chloroplast organization
GO:0050790 - regulation of catalytic activity
 TO:0000207 - plant height
TO:0000656 - root development trait
TO:0002661 - seed maturation
TO:0001012 - lateral root length
TO:0006020 - shoot apical meristem development
TO:0000227 - root length
 PO:0007520 - root development stage
PO:0000016 - lateral root primordium
PO:0020148 - shoot apical meristem
PO:0007632 - seed maturation stage
PO:0006085 - root meristem
Os06g0128300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g03770.1
BZIP47 OsbZIP47
TGAL3
OsTGAL3
 b-ZIP TRANSCRIPTION FACTOR 47 b-ZIP transcription factor 47
TGA-like protein 3
 6 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Grain shape
Other
Reproductive organ - Heading date
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Shoot apical meristem(SAM)
 GO:0043565 - sequence-specific DNA binding
GO:0035266 - meristem growth
GO:0048507 - meristem development
GO:0048437 - floral organ development
GO:0010073 - meristem maintenance
GO:0008285 - negative regulation of cell proliferation
GO:0005634 - nucleus
GO:0009909 - regulation of flower development
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0048509 - regulation of meristem development
GO:0003700 - transcription factor activity
GO:0009555 - pollen development
GO:0009556 - microsporogenesis
GO:0051775 - response to redox state
GO:0010229 - inflorescence development
GO:0009908 - flower development
GO:0048833 - specification of floral organ number
GO:0010097 - specification of stamen identity
GO:0080050 - regulation of seed development
GO:0042542 - response to hydrogen peroxide
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048653 - anther development
GO:0080006 - internode patterning
GO:0048573 - photoperiodism, flowering
 TO:0000734 - grain length
TO:0000411 - seed length to width ratio
TO:0006022 - floral organ development trait
TO:0002688 - leaf lamina joint bending
TO:0000622 - flower development trait
TO:0000397 - grain size
TO:0000207 - plant height
TO:0000053 - pollen sterility
TO:0006021 - vegetative to reproductive phase transition trait
TO:0000137 - days to heading
TO:0006038 - floral organ number
TO:0006016 - meristem tissue development trait
TO:0000402 - grain width
TO:0000456 - spikelet number
TO:0000653 - seed development trait
TO:0000187 - anther color
TO:0000547 - primary branch number
TO:0006020 - shoot apical meristem development
TO:0000382 - 1000-seed weight
TO:0002609 - stamen length
TO:0000590 - grain weight
TO:0000225 - stamen number
TO:0000215 - stamen anatomy and morphology trait
TO:0006009 - lodicule anatomy and morphology trait
TO:0000050 - inflorescence branching
TO:0006023 - lodicule development trait
TO:0000357 - growth and development trait
TO:0000346 - tiller number
TO:0000040 - panicle length
 PO:0025477 - floral organ primordium
PO:0001007 - pollen development stage
PO:0009029 - stamen
PO:0006327 - spikelet meristem
PO:0004703 - carpel primordium
PO:0000230 - inflorescence meristem
PO:0020003 - plant ovule
PO:0007089 - stem elongation stage
PO:0001004 - anther development stage
PO:0001049 - lodicule development stage
PO:0007615 - flower development stage
PO:0008037 - seedling
PO:0009010 - seed
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0009005 - root
PO:0025585 - floral organ formation stage
PO:0009036 - lodicule
PO:0000229 - flower meristem
Os06g0265400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g15480.1
LOC_Os06g15480.2
NDL1 ERF79
OsERF#079
OsERF079
OsERF79
AP2/EREBP#017
AP2/EREBP17
OsNDL1
DSP
OsDSP
 NARROW AND DWARF LEAF 1 ethylene response factor 79
APETALA2/ethylene-responsive element binding protein 17
defective stigma and panicle
 2 Vegetative organ - Shoot apical meristem(SAM)
Other
Vegetative organ - Culm
Reproductive organ - Inflorescence
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Leaf
 GO:0010229 - inflorescence development
GO:0005634 - nucleus
GO:0048437 - floral organ development
GO:0003700 - transcription factor activity
GO:0010223 - secondary shoot formation
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009733 - response to auxin stimulus
GO:0009926 - auxin polar transport
GO:0006351 - transcription, DNA-dependent
GO:0010492 - maintenance of shoot apical meristem identity
GO:0009734 - auxin mediated signaling pathway
GO:0008283 - cell proliferation
GO:0048366 - leaf development
GO:0003677 - DNA binding
GO:0048480 - stigma development
 TO:0000456 - spikelet number
TO:0006016 - meristem tissue development trait
TO:0006038 - floral organ number
TO:0000630 - pedicel length
TO:0000346 - tiller number
TO:0000358 - female sterility
TO:0006022 - floral organ development trait
TO:0000050 - inflorescence branching
TO:0000455 - seed set percent
TO:0006020 - shoot apical meristem development
TO:0000655 - leaf development trait
TO:0000329 - tillering ability
TO:0000621 - inflorescence development trait
TO:0000163 - auxin sensitivity
 PO:0001050 - leaf development stage
PO:0001083 - inflorescence development stage
PO:0009049 - inflorescence
PO:0025127 - primordium
PO:0025477 - floral organ primordium
PO:0020148 - shoot apical meristem
PO:0009013 - portion of meristem tissue
PO:0006327 - spikelet meristem
PO:0009066 - anther
PO:0009072 - plant ovary
PO:0009073 - stigma
PO:0000017 - vascular leaf primordium
Os02g0594300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g38090.1
NAC3 OsNAC3
NAC67
ONAC067
OnNAC3*
OsNAC3/ONAC067
DLN180
OsDLN180
 NAC DOMAIN-CONTAINING PROTEIN 3 NAC 3
OsNAC gene-3
ONNAC GENE 3
NAC domain-containing protein 67
DLN repressor 180
DLN motif protein 180
 7 Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Culm
Vegetative organ - Root
Biochemical character
Tolerance and resistance - Insect resistance
Character as QTL - Plant growth activity
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
 GO:0003677 - DNA binding
GO:0045449 - regulation of transcription
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0009740 - gibberellic acid mediated signaling
GO:0009625 - response to insect
GO:0080027 - response to herbivore
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0080141 - regulation of jasmonic acid biosynthetic process
GO:0002213 - defense response to insect
GO:0009409 - response to cold
GO:0004812 - aminoacyl-tRNA ligase activity
GO:0030912 - response to deep water
GO:0009738 - abscisic acid mediated signaling
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
 TO:0000205 - white-backed planthopper resistance
TO:0000424 - brown planthopper resistance
TO:0000615 - abscisic acid sensitivity
TO:0000524 - submergence tolerance
TO:0000019 - seedling height
TO:0006001 - salt tolerance
TO:0000227 - root length
TO:0000303 - cold tolerance
TO:0000382 - 1000-seed weight
TO:0000402 - grain width
TO:0000734 - grain length
TO:0000447 - filled grain number
TO:0000040 - panicle length
TO:0000207 - plant height
TO:0000608 - sodium content
TO:0002675 - gibberellic acid content
TO:0000172 - jasmonic acid sensitivity
 PO:0009005 - root
PO:0020104 - leaf sheath
PO:0007131 - seedling development stage
Os07g0225300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g12340.1
NAC4 OsNAC4
NAC68
ONAC068
OnNAC4*
OnNAC4
OsNAC4/ONAC068
 NAC DOMAIN-CONTAINING PROTEIN 4 NAC 4
NAC domain-containing protein 68
ONNAC GENE 4
OsNAC gene-4
OnNAC gene-4
 1 Tolerance and resistance - Disease resistance
Biochemical character
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
 GO:0003677 - DNA binding
GO:0004812 - aminoacyl-tRNA ligase activity
GO:0009635 - response to herbicide
GO:0010188 - response to microbial phytotoxin
GO:0009651 - response to salt stress
GO:0009266 - response to temperature stimulus
GO:0002213 - defense response to insect
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0080027 - response to herbivore
GO:0080141 - regulation of jasmonic acid biosynthetic process
GO:0009617 - response to bacterium
GO:0009609 - response to symbiotic bacterium
GO:0045449 - regulation of transcription
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0048439 - flower morphogenesis
GO:0034052 - positive regulation of plant-type hypersensitive response
GO:0010446 - response to alkalinity
GO:0050832 - defense response to fungus
 TO:0006001 - salt tolerance
TO:0000481 - alkali sensitivity
TO:0000205 - white-backed planthopper resistance
TO:0000622 - flower development trait
TO:0000058 - herbicide sensitivity
TO:0000207 - plant height
TO:0000424 - brown planthopper resistance
TO:0000315 - bacterial disease resistance
TO:0000074 - blast disease
TO:0006020 - shoot apical meristem development
TO:0000112 - disease resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000432 - temperature response trait
 PO:0007615 - flower development stage
Os01g0816100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g60020.1
NAC6 OsNAC6
ONAC048
NAC48
SNAC2
SNAC2/OsNAC6
OsNAC6/ONAC048
OsSNAC2
SNAC-2
OsSNAC-2
OsNAC2
 NAC DOMAIN-CONTAINING PROTEIN 6 NAC 6
OsNac gene-6
O. sativa gene with the NAC domain 6
OsNAC6 protein
NAC domain-containing protein 48
stress-responsive NAC transcription factor SNAC2
stress-responsive NAC transcription factor 2
 1 Tolerance and resistance - Disease resistance
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Vegetative organ - Shoot apical meristem(SAM)
 GO:0003677 - DNA binding
GO:0006350 - transcription
GO:0009611 - response to wounding
GO:0009788 - negative regulation of abscisic acid mediated signaling
GO:0010033 - response to organic substance
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009409 - response to cold
GO:0009609 - response to symbiotic bacterium
GO:0009751 - response to salicylic acid stimulus
GO:0050832 - defense response to fungus
GO:0048364 - root development
GO:0030418 - nicotianamine biosynthetic process
GO:0045449 - regulation of transcription
GO:0005634 - nucleus
GO:0004812 - aminoacyl-tRNA ligase activity
GO:0030912 - response to deep water
 TO:0006001 - salt tolerance
TO:0000084 - root number
TO:0000074 - blast disease
TO:0000227 - root length
TO:0000276 - drought tolerance
TO:0000112 - disease resistance
TO:0000615 - abscisic acid sensitivity
TO:0000656 - root development trait
TO:0000172 - jasmonic acid sensitivity
TO:0000303 - cold tolerance
TO:0000524 - submergence tolerance
TO:0000043 - root anatomy and morphology trait
 PO:0001031 - 4 root elongation stage
PO:0007520 - root development stage
Os01g0884300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g66120.3
LOC_Os01g66120.1
OSH1 OSKN1
Oskn1
OsKN1
OSH1/Oskn1
HB75
 HOMEOBOX 1 Oryza sativa homeobox1
Homeobox protein OSH1
Homeobox protein knotted-1-like 6
Homeobox protein knotted-1-like 1
Rice KNOX gene-1
KNOX PROTEIN 1
KNOX protein 1
KNOX protein 1
HOMEOBOX 1
HOMEOBOX PROTEIN OSH1
 3 Character as QTL - Germination
Other
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
 GO:0048437 - floral organ development
GO:0009629 - response to gravity
GO:0009413 - response to flooding
GO:0009845 - seed germination
GO:0009742 - brassinosteroid mediated signaling
GO:0016132 - brassinosteroid biosynthetic process
GO:0030244 - cellulose biosynthetic process
GO:0052386 - cell wall thickening
GO:0009664 - plant-type cell wall organization
GO:0009834 - secondary cell wall biogenesis
GO:0009612 - response to mechanical stimulus
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0009901 - anther dehiscence
GO:0048653 - anther development
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0006350 - transcription
 TO:0000447 - filled grain number
TO:0000068 - lodging incidence
TO:0000492 - leaf shape
TO:0000206 - leaf angle
TO:0000432 - temperature response trait
TO:0002688 - leaf lamina joint bending
TO:0000524 - submergence tolerance
TO:0002672 - auxin content
TO:0002689 - leaf sheath length
TO:0002693 - gravity response trait
 PO:0001004 - anther development stage
PO:0009025 - vascular leaf
PO:0020104 - leaf sheath
PO:0007057 - 0 seed germination stage
PO:0007045 - coleoptile emergence stage
PO:0020148 - shoot apical meristem
Os03g0727000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g51690.3
LOC_Os03g51690.2
LOC_Os03g51690.1
RLB OSH15
OsH15
OSKN3
Oskn3
HOS3
D6
d6
OSH15/Oskn3
HB253
H15
OsKNOX3
KNOX3
OsRLB
 RICE LATERAL BRANCH Oryza sativa homeobox15
Rice KNOX gene-15
Homeobox protein knotted-1-like 12
Homeobox protein OSH15
Homeobox protein HOS3
Homeobox protein knotted-1-like 3
KNOX PROTEIN 3
Oryza sativa Homeobox 15
 7 Seed - Physiological traits - Shattering
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Vegetative organ - Shoot apical meristem(SAM)
Character as QTL - Yield and productivity
Reproductive organ - Inflorescence
 GO:0008283 - cell proliferation
GO:0010422 - regulation of brassinosteroid biosynthetic process
GO:0010268 - brassinosteroid homeostasis
GO:0009741 - response to brassinosteroid stimulus
GO:0010229 - inflorescence development
GO:0016131 - brassinosteroid metabolic process
GO:0009742 - brassinosteroid mediated signaling
GO:0009612 - response to mechanical stimulus
GO:0009809 - lignin biosynthetic process
GO:0009823 - cytokinin catabolic process
GO:0009629 - response to gravity
GO:0009413 - response to flooding
GO:0009845 - seed germination
GO:0009736 - cytokinin mediated signaling
GO:0048831 - regulation of shoot development
GO:0080006 - internode patterning
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0040029 - regulation of gene expression, epigenetic
GO:0010431 - seed maturation
GO:0048437 - floral organ development
 TO:0000207 - plant height
TO:0000040 - panicle length
TO:0000456 - spikelet number
TO:0000557 - secondary branch number
TO:0000621 - inflorescence development trait
TO:0000733 - lignin biosynthesis trait
TO:0002676 - brassinosteroid content
TO:0000346 - tiller number
TO:0000731 - lignin content
TO:0000050 - inflorescence branching
TO:0000274 - floret anatomy and morphology trait
TO:0000329 - tillering ability
TO:0000243 - invitro regeneration ability
TO:0000492 - leaf shape
TO:0000011 - nitrogen sensitivity
TO:0000019 - seedling height
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000149 - seed width
TO:0002660 - cytokinin content
TO:0000524 - submergence tolerance
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000473 - grain shattering
TO:0002693 - gravity response trait
TO:0002729 - fruit senescing quality trait
TO:0000576 - stem length
TO:0002675 - gibberellic acid content
TO:0000396 - grain yield
TO:0000145 - internode length
TO:0002677 - brassinosteroid sensitivity
 PO:0007045 - coleoptile emergence stage
PO:0007057 - 0 seed germination stage
PO:0007632 - seed maturation stage
PO:0005421 - parenchyma
PO:0001083 - inflorescence development stage
PO:0020142 - stem internode
PO:0009025 - vascular leaf
PO:0007089 - stem elongation stage
PO:0005005 - shoot internode
Os07g0129700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g03770.1
OSH3 OsH3
H3
HOS13
 HOMEOBOX 3 Oryza sativa homeobox3
Homeobox protein knotted-1-like 7
Homeobox protein OSH3
Homeobox protein HOS13
Rice KNOX gene-3
 3 Vegetative organ - Shoot apical meristem(SAM)
 GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0003700 - transcription factor activity
GO:0043565 - sequence-specific DNA binding
 TO:0000335 - ligule shape
TO:0000492 - leaf shape
 PO:0020105 - ligule
PO:0009025 - vascular leaf
Os03g0727200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g51710.1
LOC_Os03g51710.2
OSH6 OsH6
HOS16
 HOMEOBOX 6 Oryza sativa homeobox6
Rice KNOX gene-6
Homeobox protein knotted-1-like 1
Homeobox protein OSH6
Homeobox protein HOS16
Oryza sativa Homeobox 6
 1 Vegetative organ - Root
Vegetative organ - Culm
Vegetative organ - Shoot apical meristem(SAM)
 GO:0010432 - bract development
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0090058 - metaxylem development
GO:0003677 - DNA binding
 TO:0000552 - shoot dry weight
TO:0000470 - vascular tissue related trait
TO:0002685 - crown root number
TO:0001009 - deep root number
TO:0000492 - leaf shape
 PO:0009025 - vascular leaf
Os01g0302500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g19694.1
OSH10 OsH10
H10
HB412
 HOMEOBOX 10 Oryza sativa homeobox10
Homeobox protein knotted-1-like 4
Homeobox protein OSH10
Rice KNOX gene-10
 3 Vegetative organ - Shoot apical meristem(SAM)
 GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0003700 - transcription factor activity
GO:0009536 - plastid
GO:0043565 - sequence-specific DNA binding
 TO:0000492 - leaf shape
 PO:0009025 - vascular leaf
Os03g0673000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g47016.1
OSH43 OsH43
H43
 HOMEOBOX 43 Oryza sativa homeobox43
Homeobox protein knotted-1-like 8
Homeobox protein OSH43
Rice KNOX gene-43
 3 Vegetative organ - Shoot apical meristem(SAM)
 GO:0003700 - transcription factor activity
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0005634 - nucleus
 TO:0000492 - leaf shape
 PO:0009025 - vascular leaf
Os03g0771500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g56110.1
LOC_Os03g56110.2
RFL OSL
FL
APO2
APO2/RFL
SSC
SSC/RFL/APO2
OsRFL
OsFL
OsAPO2
OsSSC
 FLO-LFY HOMOLOG OF RICE Rice LFY-like gene
Probable transcription factor FL
RICE FLORICAULA
ABERRANT PANICLE ORGANIZATION 2
RFL/ABERRANT PANICLE ORGANIZATION 2
SHORT and SOLID CULM
RICE FLORICAULA/LEAFY
 4 Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Character as QTL - Yield and productivity
Reproductive organ - panicle
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Panicle, Mode of branching
 GO:0007275 - multicellular organismal development
GO:0010223 - secondary shoot formation
GO:0045449 - regulation of transcription
GO:0048573 - photoperiodism, flowering
GO:0010229 - inflorescence development
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0045487 - gibberellin catabolic process
GO:0043067 - regulation of programmed cell death
GO:0006309 - DNA fragmentation involved in apoptosis
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0010081 - regulation of inflorescence meristem growth
GO:0009414 - response to water deprivation
GO:0009742 - brassinosteroid mediated signaling
GO:0051510 - regulation of unidimensional cell growth
GO:0051302 - regulation of cell division
GO:0010073 - meristem maintenance
GO:0006350 - transcription
GO:0005634 - nucleus
GO:0003677 - DNA binding
 TO:0000145 - internode length
TO:0000456 - spikelet number
TO:0000050 - inflorescence branching
TO:0000576 - stem length
TO:0000207 - plant height
TO:0006016 - meristem tissue development trait
TO:0002675 - gibberellic acid content
TO:0000557 - secondary branch number
TO:0000040 - panicle length
TO:0000447 - filled grain number
TO:0000011 - nitrogen sensitivity
TO:0002616 - flowering time
TO:0000329 - tillering ability
TO:0000547 - primary branch number
TO:0002677 - brassinosteroid sensitivity
TO:0006032 - panicle size
TO:0000276 - drought tolerance
TO:0002759 - grain number
TO:0000621 - inflorescence development trait
TO:0001035 - stem width
 PO:0000034 - vascular system
PO:0006079 - shoot meristem
PO:0000017 - vascular leaf primordium
PO:0001083 - inflorescence development stage
PO:0007089 - stem elongation stage
Os04g0598300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g51000.1
PNH1 OsPNH1
 PINHEAD 1 Oryza sativa pinhead1
PINHEAD1
ZLL/PNH homologous protein
Protein argonaute PNH1
Protein PINHEAD homolog 1
pinhead1
OsPINHEAD1
 6 Vegetative organ - Leaf
Vegetative organ - Shoot apical meristem(SAM)
 GO:0010073 - meristem maintenance
GO:0048366 - leaf development
GO:0019827 - stem cell maintenance
GO:0031047 - gene silencing by RNA
GO:0003676 - nucleic acid binding
GO:0003743 - translation initiation factor activity
GO:0005737 - cytoplasm
 TO:0006017 - meristem identity
TO:0000207 - plant height
TO:0000492 - leaf shape
TO:0000472 - vascular bundle number
 PO:0006019 - leaf abaxial epidermis
PO:0009015 - portion of vascular tissue
PO:0006018 - leaf adaxial epidermis
PO:0004726 - adaxial side of leaf primordium
PO:0000230 - inflorescence meristem
PO:0000225 - peripheral zone
PO:0000036 - leaf vascular system
PO:0006023 - bundle sheath
Os06g0597400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g39640.1
WOX4 OsWOX4
Os WOX4
 WUSCHEL-LIKE HOMEOBOX 4 WUSCHEL-related homeobox 4
WUSCHEL-RELATED HOMEOBOX4
 4 Character as QTL - Yield and productivity
Other
Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Seed - Morphological traits - Grain shape
 GO:0009555 - pollen development
GO:0048364 - root development
GO:0009635 - response to herbicide
GO:0009651 - response to salt stress
GO:0051510 - regulation of unidimensional cell growth
GO:0008285 - negative regulation of cell proliferation
GO:0006351 - transcription, DNA-dependent
GO:0005634 - nucleus
GO:0009735 - response to cytokinin stimulus
GO:0006970 - response to osmotic stress
GO:0003700 - transcription factor activity
GO:0007275 - multicellular organismal development
GO:0009733 - response to auxin stimulus
GO:0009959 - negative gravitropism
GO:0043565 - sequence-specific DNA binding
GO:0009414 - response to water deprivation
GO:0009790 - embryonic development
GO:0009926 - auxin polar transport
GO:0010073 - meristem maintenance
 TO:0000227 - root length
TO:0000095 - osmotic response sensitivity
TO:0000207 - plant height
TO:0000391 - seed size
TO:0000734 - grain length
TO:0002692 - root meristem development
TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000620 - embryo development trait
TO:0006017 - meristem identity
TO:0002693 - gravity response trait
TO:0000058 - herbicide sensitivity
TO:0000396 - grain yield
 PO:0025034 - leaf
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020104 - leaf sheath
PO:0009010 - seed
Os04g0649400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g55590.1
CLE402 FCP1
OsFCP1
FCP1/Os CLE402
Os CLE402
OsCLE402
 CLV3/ESR-RELATED 402 FON2-LIKE CLE PROTEIN1
CLV3/ESR-related 402
CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 402
 4 Vegetative organ - Leaf
Vegetative organ - Shoot apical meristem(SAM)
 GO:0048366 - leaf development
 TO:0000655 - leaf development trait
 Os04g0473800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g39770.1
_ FCP2
 _ FON2-LIKE CLE PROTEIN2
 6 Vegetative organ - Shoot apical meristem(SAM)
 Os06g0532500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g34180.1
_ OsGASR1
GASR1
 _ GAST (GA-stimulated transcript) homolog 1
GAST homolog 1
GA-stimulated transcript homolog 1
GA-stimulated transcript-related gene 1
 3 Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Leaf
 GO:0005618 - cell wall
GO:0009826 - unidimensional cell growth
GO:0048046 - apoplast
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0010229 - inflorescence development
GO:0009739 - response to gibberellin stimulus
GO:0008283 - cell proliferation
GO:0009411 - response to UV
 TO:0000621 - inflorescence development trait
TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0000166 - gibberellic acid sensitivity
TO:0000160 - UV light sensitivity
TO:0000135 - leaf length
 PO:0000005 - cultured plant cell
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
PO:0020147 - root apical meristem
PO:0020123 - root cap
PO:0000055 - bud
Os03g0760800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g55290.1
_ OsGASR2
GASR2
 _ GAST (GA-stimulated transcript) homolog 2
GAST homolog 2
GA-stimulated transcript homolog 2
GA-stimulated transcript-related gene 2
 4 Vegetative organ - Shoot apical meristem(SAM)
 GO:0009739 - response to gibberellin stimulus
GO:0048046 - apoplast
GO:0005618 - cell wall
GO:0010229 - inflorescence development
GO:0008283 - cell proliferation
 TO:0000166 - gibberellic acid sensitivity
TO:0000621 - inflorescence development trait
 PO:0020147 - root apical meristem
PO:0000005 - cultured plant cell
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
PO:0020123 - root cap
Os04g0465300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g39110.1
LOC_Os04g39110.2
CYP734A2 OsCYP734A2
 CYTOCHROME P450 HYDROXYLASE 734A2 Cytochrome P450 734A2
 2 Biochemical character
Vegetative organ - Shoot apical meristem(SAM)
 GO:0016021 - integral to membrane
GO:0005506 - iron ion binding
GO:0008395 - steroid hydroxylase activity
GO:0009055 - electron carrier activity
GO:0009741 - response to brassinosteroid stimulus
GO:0004497 - monooxygenase activity
GO:0040008 - regulation of growth
GO:0020037 - heme binding
GO:0010268 - brassinosteroid homeostasis
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016133 - brassinosteroid catabolic process
GO:0016131 - brassinosteroid metabolic process
GO:0009416 - response to light stimulus
 Os02g0204700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g11020.1
BRD3 OsCYP734A4
CYP734A4
OsBRD3
 BRASSINOSTEROID-DEFICIENT DWARF 3 BRASSINOSTEROID-DEFICIENT DWARF3
 6 Character as QTL - Yield and productivity
Vegetative organ - Shoot apical meristem(SAM)
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
 GO:0020037 - heme binding
GO:0016021 - integral to membrane
GO:0009055 - electron carrier activity
GO:0008395 - steroid hydroxylase activity
GO:0009416 - response to light stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009741 - response to brassinosteroid stimulus
GO:0010268 - brassinosteroid homeostasis
GO:0005506 - iron ion binding
GO:0004497 - monooxygenase activity
GO:0040008 - regulation of growth
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016131 - brassinosteroid metabolic process
GO:0016133 - brassinosteroid catabolic process
 TO:0002759 - grain number
TO:0000396 - grain yield
TO:0000050 - inflorescence branching
TO:0000492 - leaf shape
TO:0002689 - leaf sheath length
TO:0000625 - spikelet density
TO:0000456 - spikelet number
 Os06g0600400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g39880.1
CYP734A6 OsCYP734A6
 CYTOCHROME P450 HYDROXYLASE 734A6 1 Vegetative organ - Shoot apical meristem(SAM)
Biochemical character
 GO:0016131 - brassinosteroid metabolic process
GO:0020037 - heme binding
GO:0040008 - regulation of growth
GO:0016133 - brassinosteroid catabolic process
GO:0016021 - integral to membrane
GO:0010268 - brassinosteroid homeostasis
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0009055 - electron carrier activity
 Os01g0388000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g29150.1
LBD12-1 OsLBD12-1
OsLBD30
LBD30
 LATERAL ORGAN BOUNDARIES DOMAIN 12-1 LBD family transcription factor 12-1
lateral organ boundaries domain protein 12-1
 12 Vegetative organ - Shoot apical meristem(SAM)
Other
 GO:0048653 - anther development
GO:0009739 - response to gibberellin stimulus
GO:0040007 - growth
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0009735 - response to cytokinin stimulus
 TO:0000214 - anther shape
TO:0006020 - shoot apical meristem development
TO:0000492 - leaf shape
TO:0000515 - relative growth rate
TO:0000215 - stamen anatomy and morphology trait
TO:0000167 - cytokinin sensitivity
TO:0000166 - gibberellic acid sensitivity
 PO:0001004 - anther development stage
Os12g0106200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g01550.1
SIP5 OsARID3
ARID3
OsSIP5
 SKIP INTERACTING PROTEIN 5 AT-rich Interaction Domain-containing protein 3
SKIP interacting protein 5
SKIPa-interacting protein 5
SKIPa-interacting protein 5
ARID transcription factor 3
AT-Rich Interaction Domain-containing transcription factor 3
ARID-containing transcription factor 3
 6 Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
 GO:0009691 - cytokinin biosynthetic process
GO:0002213 - defense response to insect
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010073 - meristem maintenance
GO:0010252 - auxin homeostasis
GO:0010600 - regulation of auxin biosynthetic process
GO:0009414 - response to water deprivation
GO:0003677 - DNA binding
 TO:0002660 - cytokinin content
TO:0002638 - shoot meristem development
TO:0000424 - brown planthopper resistance
TO:0000276 - drought tolerance
TO:0002672 - auxin content
TO:0006020 - shoot apical meristem development
 PO:0020148 - shoot apical meristem
Os06g0622300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g41730.1
LOC_Os06g41730.2
LARGE2 OsLARGE2
OsUPL2
UPL2
OsHECT8
HECT8
 UBIQUITIN PROTEIN LIGASE 2 Ubiquitin Protein Ligase 2
HECT-type E3 ubiquitin ligase 8
 12 Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - panicle
Character as QTL - Yield and productivity
Seed - Morphological traits
Vegetative organ - Shoot apical meristem(SAM)
 GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process
GO:0016567 - protein ubiquitination
GO:0006511 - ubiquitin-dependent protein catabolic process
GO:0045732 - positive regulation of protein catabolic process
GO:0009735 - response to cytokinin stimulus
GO:0010073 - meristem maintenance
GO:0009736 - cytokinin mediated signaling
GO:0008285 - negative regulation of cell proliferation
GO:0009691 - cytokinin biosynthetic process
GO:0005737 - cytoplasm
GO:0000209 - protein polyubiquitination
 TO:0000557 - secondary branch number
TO:0002660 - cytokinin content
TO:0000167 - cytokinin sensitivity
TO:0000339 - stem thickness
TO:0000370 - leaf width
TO:0000975 - grain width
TO:0000397 - grain size
TO:0002637 - leaf size
TO:0002759 - grain number
TO:0006032 - panicle size
TO:0000402 - grain width
TO:0006020 - shoot apical meristem development
TO:0000547 - primary branch number
 PO:0009005 - root
PO:0020148 - shoot apical meristem
PO:0020104 - leaf sheath
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0009010 - seed
PO:0025034 - leaf
PO:0000229 - flower meristem
Os12g0428600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g24080.1
_ Os_CLE48
OsCLE48
CLE48
 _ CLAVATA3/ENDOSPERM SURROUNDING REGION 48
CLV3/ESR-related 48
CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 48
 5 Vegetative organ - Shoot apical meristem(SAM)
 GO:0009733 - response to auxin stimulus
 TO:0000163 - auxin sensitivity
TO:0006020 - shoot apical meristem development
 PO:0020148 - shoot apical meristem
Os05g0561300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g48730.1
NAC5 OsNAC5
NAC71
ONAC071
ONAC009
ONAC9
ONAC020
ONAC20
OnNAC5*
OnNAC5
OsNAC5/ONAC009
 NAC DOMAIN-CONTAINING PROTEIN 5 NAC 5
NAC domain-containing protein 71
ONNAC GENE 5
OsNAC gene-5
NAC domain-containing protein 9
NAC domain-containing protein 20
OnNAC gene-5
 11 Biochemical character
Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
 GO:0004812 - aminoacyl-tRNA ligase activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0003677 - DNA binding
GO:0010150 - leaf senescence
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0045449 - regulation of transcription
GO:0046686 - response to cadmium ion
GO:0070574 - cadmium ion transmembrane transport
GO:0042542 - response to hydrogen peroxide
 TO:0000276 - drought tolerance
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000043 - root anatomy and morphology trait
TO:0000396 - grain yield
TO:0000153 - relative yield
TO:0000731 - lignin content
TO:0000516 - relative root length
TO:0000143 - relative biomass
TO:0001034 - relative plant height
TO:0000172 - jasmonic acid sensitivity
TO:0002661 - seed maturation
 PO:0001054 - 4 leaf senescence stage
PO:0025034 - leaf
PO:0009005 - root
Os11g0184900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g08210.1
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