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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
CENH3 OsCENH3
CenH3
 CENTROMERIC HISTONE 3C centromeric histone H3
centromere-specific histone H3
centromere-specific H3 histone
centromere-specific histone H3
 5 Character as QTL - Plant growth activity
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - Heading date
 GO:0006334 - nucleosome assembly
GO:0005515 - protein binding
GO:0009567 - double fertilization forming a zygote and endosperm
GO:0051983 - regulation of chromosome segregation
GO:0000776 - kinetochore
GO:0046982 - protein heterodimerization activity
GO:0003677 - DNA binding
GO:0007276 - gamete generation
GO:0030527 - structural constituent of chromatin
GO:0009960 - endosperm development
GO:0048573 - photoperiodism, flowering
GO:0009793 - embryonic development ending in seed dormancy
GO:0000775 - chromosome, centromeric region
GO:0051382 - kinetochore assembly
GO:0000786 - nucleosome
GO:0005634 - nucleus
 TO:0000040 - panicle length
TO:0002616 - flowering time
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000620 - embryo development trait
TO:0002757 - flag leaf length
TO:0000455 - seed set percent
TO:0000421 - pollen fertility
 PO:0007631 - plant embryo stage
PO:0007633 - endosperm development stage
Os05g0489800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41080.1
LOC_Os05g41080.2
CPN60 chaperonin 60
 CHAPERONIN 60 Biochemical character
 GO:0016465 - chaperonin ATPase complex
GO:0006457 - protein folding
 -
CSLD1 csld1
OsCSLD1
OsCslD1
 CELLULOSE SYNTHASE LIKE D1 Cellulose Synthase-Like D1
Cellulose synthase-like protein D1
 10 Biochemical character
 GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0030244 - cellulose biosynthetic process
GO:0016760 - cellulose synthase (UDP-forming) activity
GO:0016021 - integral to membrane
GO:0005794 - Golgi apparatus
GO:0007047 - cell wall organization
 Os10g0578200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g42750.1
CYCD3 CYCD3
 D-TYPE CYCLIN 3 Biochemical character
 GO:0007049 - cell cycle
GO:0051301 - cell division
GO:0005634 - nucleus
 -
CYCD7 CYCD7
 D-TYPE CYCLIN 7 Biochemical character
 GO:0005634 - nucleus
GO:0051301 - cell division
GO:0007049 - cell cycle
 -
EXPA7 OsEXPA7
EXP7
OsEXP7
OsaEXPa1.26
 ALPHA-EXPANSIN 7 Expansin-A7
Alpha-expansin-7
 3 Biochemical character
 GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0019898 - extrinsic to membrane
GO:0005576 - extracellular region
GO:0009664 - plant-type cell wall organization
GO:0005618 - cell wall
 Os03g0822000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g60720.1
EXPB12 OsEXPB12
OsaEXPb1.17
 BETA-EXPANSIN 12 Expansin-B12
Beta-expansin-12
 3 Biochemical character
 GO:0005576 - extracellular region
GO:0005618 - cell wall
GO:0007047 - cell wall organization
GO:0019898 - extrinsic to membrane
GO:0019953 - sexual reproduction
GO:0016023 - cytoplasmic membrane-bounded vesicle
 Os03g0645000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g44290.1
LOC_Os03g44290.2
LOC_Os03g44290.3
GH3-8 OsGH3-8
OsMGH3
OsGH3.8
GH3.8
OsGH3-2
 GRETCHEN HAGEN 3 GENE 8 Gretchen Hagen 3 protein 8
 7 Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
 GO:0009863 - salicylic acid mediated signaling pathway
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009852 - auxin catabolic process
GO:0006955 - immune response
GO:0010279 - indole-3-acetic acid amido synthetase activity
GO:0016874 - ligase activity
GO:0009651 - response to salt stress
GO:0051607 - defense response to virus
GO:0009908 - flower development
 TO:0000172 - jasmonic acid sensitivity
TO:0000207 - plant height
TO:0000622 - flower development trait
TO:0000401 - plant growth hormone sensitivity
TO:0000346 - tiller number
TO:0006001 - salt tolerance
TO:0000020 - black streak dwarf virus resistance
TO:0002672 - auxin content
 PO:0009066 - anther
PO:0005052 - plant callus
PO:0008037 - seedling
PO:0009010 - seed
PO:0009049 - inflorescence
PO:0007615 - flower development stage
Os07g0592600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g40290.1
HSA32 Hsa32
OsHSA32
OsPPS1
 HEAT-STRESS-ASSOCIATED 32KD PROTEIN heat-stress-associated 32-kD protein
rice ortholog of Hsa32
Hsa32 homolog
phosphosulfolactate synthase 1
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0006950 - response to stress
GO:0004252 - serine-type endopeptidase activity
GO:0005618 - cell wall
GO:0010286 - heat acclimation
GO:0010608 - posttranscriptional regulation of gene expression
GO:0019295 - coenzyme M biosynthetic process
GO:0009408 - response to heat
 TO:0000259 - heat tolerance
 Os06g0682900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g46900.1
LOC_Os06g46900.2
LOC_Os06g46900.3
LOC_Os06g46900.4
MCM10 OsMCM10
 MINI-CHROMOSOME MAINTENANCE PROTEIN 10 mini-chromosome maintenance protein 10
 9 Biochemical character
 GO:0006260 - DNA replication
GO:0003677 - DNA binding
GO:0005524 - ATP binding
 Os09g0539400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g36820.1
MCM8 OsMCM8
 MINI-CHROMOSOME MAINTENANCE PROTEIN 8 mini-chromosome maintenance protein 8
 5 Biochemical character
 GO:0006260 - DNA replication
GO:0005524 - ATP binding
GO:0003677 - DNA binding
 Os05g0464100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g38850.1
MCM9 OsMCM9
 MINI-CHROMOSOME MAINTENANCE PROTEIN 9 mini-chromosome maintenance protein 9
 6 Biochemical character
 GO:0006260 - DNA replication
GO:0003677 - DNA binding
GO:0005524 - ATP binding
 Os06g0218500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g11500.1
NOC3 NOC3
 NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3 Nucleolar complex-associated protein 3
 6 Biochemical character
 GO:0006260 - DNA replication
 Os06g0498500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g30320.1
NPP1 OsNPP1
OsPAP27b
PAP27B
 NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1 Nucleotide Pyrophosphatase/Phosphodiesterase 1
Purple acid phosphatase 27b
 8 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0001666 - response to hypoxia
GO:0004528 - phosphodiesterase I activity
GO:0046872 - metal ion binding
GO:0003993 - acid phosphatase activity
GO:0004551 - nucleotide diphosphatase activity
GO:0005618 - cell wall
 TO:0000233 - root volume
TO:0000207 - plant height
TO:0000015 - oxygen sensitivity
TO:0000696 - starch content
 Os08g0531000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g41880.1
NTRC OsNTRC
NtrC
OsGRL15
 CHLOROPLAST NADPH THIOREDOXIN REDUCTASE NADPH thioredoxin reductase
GRX-like protein 15
glutaredoxin-like protein 15
chloroplastic type NTR
chloroplastic type NADPH-dependent thioredoxin reductase
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0050660 - FAD binding
GO:0008047 - enzyme activator activity
GO:0009570 - chloroplast stroma
GO:0009507 - chloroplast
GO:0010027 - thylakoid membrane organization
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0010581 - regulation of starch biosynthetic process
GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0046686 - response to cadmium ion
GO:0045454 - cell redox homeostasis
GO:0022900 - electron transport chain
GO:0004791 - thioredoxin-disulfide reductase activity
GO:0016117 - carotenoid biosynthetic process
GO:0019430 - removal of superoxide radicals
GO:0042744 - hydrogen peroxide catabolic process
 TO:0002657 - oxidative stress
 Os07g0657900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g46410.1
NYC1 nyc1
OsNYC1
 NON-YELLOW COLORING 1 Chlorophyl b degrading enzyme
Chlase
Non-Yellow Coloring 1
non-yellow coloring1
Probable chlorophyll(ide) b reductase NYC1
chloroplastic
Protein NON-YELLOW COLORING 1
short-chain dehydrogenase/reductase NYC1
 1 Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0005488 - binding
GO:0009535 - chloroplast thylakoid membrane
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0010150 - leaf senescence
GO:0016021 - integral to membrane
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0009536 - plastid
GO:0016491 - oxidoreductase activity
GO:0042170 - plastid membrane
 TO:0002712 - stay green trait
TO:0000249 - leaf senescence
TO:0000599 - enzyme activity
TO:0000495 - chlorophyll content
 PO:0009037 - lemma
PO:0001054 - 4 leaf senescence stage
PO:0020104 - leaf sheath
PO:0020122 - inflorescence axis
PO:0009025 - vascular leaf
PO:0009038 - palea
Os01g0227100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12710.2
LOC_Os01g12710.1
KRP1 OsiICK1
Orysa;KRP1
OrysaICK1
Orysa;ICK1
CDKI
OsICK1
ICK1
OsKRP1
 KIP-RELATED PROTEIN 1 Cyclin-dependent kinase inhibitor 1
KIP-related protein 1
inhibitor of cyclin-dependent kinase 1
 2 Biochemical character
 GO:0004861 - cyclin-dependent protein kinase inhibitor activity
GO:0005634 - nucleus
GO:0007050 - cell cycle arrest
GO:0007067 - mitosis
GO:0051301 - cell division
 Os02g0762400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g52480.1
BOR1 OsBOR1
 EFFLUX BORON TRANSPORTER 1 Boron transporter 1
 12 Biochemical character
 GO:0005452 - inorganic anion exchanger activity
GO:0016021 - integral to membrane
GO:0046715 - boron transporter activity
GO:0046713 - boron transport
 Os12g0566000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g37840.1
LOC_Os12g37840.2
ACO7 OsACO7
 AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7 ACC oxidase 7
1-Aminocyclopropane-1-carboxylate oxidase 7
 1 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0006970 - response to osmotic stress
GO:0046686 - response to cadmium ion
GO:0009737 - response to abscisic acid stimulus
GO:0009266 - response to temperature stimulus
GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0009693 - ethylene biosynthetic process
GO:0042742 - defense response to bacterium
GO:0009617 - response to bacterium
GO:0009651 - response to salt stress
 TO:0006001 - salt tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000095 - osmotic response sensitivity
TO:0000432 - temperature response trait
 PO:0009047 - stem
Os01g0580500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g39860.1
CIPK01 OsCIPK01
CIPK1
OsCIPK1
OsSnRK3.3
SnRK3.3
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1 CBL-interacting protein kinase 1
Sucrose nonfermenting-1-related protein kinase 3.3
 1 Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Biochemical character
Character as QTL - Yield and productivity
 GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0004713 - protein tyrosine kinase activity
GO:0030307 - positive regulation of cell growth
GO:0009740 - gibberellic acid mediated signaling
GO:0009413 - response to flooding
GO:0009651 - response to salt stress
GO:0030145 - manganese ion binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000382 - 1000-seed weight
TO:0000432 - temperature response trait
TO:0020033 - glume length
TO:0020034 - glume width
TO:0000734 - grain length
TO:0000207 - plant height
TO:0002675 - gibberellic acid content
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000396 - grain yield
TO:0000391 - seed size
TO:0000397 - grain size
TO:0000590 - grain weight
TO:0000114 - flooding related trait
 PO:0025034 - leaf
Os01g0292200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g18800.3
LOC_Os01g18800.4
LOC_Os01g18800.1
LOC_Os01g18800.2
LOC_Os01g18800.5
CIPK02 OsCIPK02
CIPK2
OsCIPK2
OsSnRK3.26
SnRK3.26
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2 CBL-interacting protein kinase 2
Sucrose nonfermenting-1-related protein kinase 3.26
 7 Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Vegetative organ - Root
 GO:0015770 - sucrose transport
GO:0034219 - carbohydrate transmembrane transport
GO:0009409 - response to cold
GO:0009737 - response to abscisic acid stimulus
GO:0005524 - ATP binding
GO:0042128 - nitrate assimilation
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0031667 - response to nutrient levels
GO:0004674 - protein serine/threonine kinase activity
GO:0006995 - cellular response to nitrogen starvation
GO:0042594 - response to starvation
GO:0019740 - nitrogen utilization
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009651 - response to salt stress
GO:0044136 - development of symbiont on or near host rhizosphere
GO:0030145 - manganese ion binding
 TO:0000371 - yield trait
TO:0001027 - net photosynthetic rate
TO:0000495 - chlorophyll content
TO:0000644 - relative root dry weight
TO:0000636 - relative shoot dry weight
TO:0000455 - seed set percent
TO:0000152 - panicle number
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000291 - carbohydrate content
TO:0000011 - nitrogen sensitivity
TO:0000382 - 1000-seed weight
TO:0000449 - grain yield per plant
TO:0000128 - harvest index
 PO:0009005 - root
Os07g0678600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g48100.1
CIPK03 OsCIPK03
CIPK3
OsCIPK3
OsSnRK3.27
SnRK3.27
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3 CBL-interacting protein kinase 3
Sucrose nonfermenting-1-related protein kinase 3.27
 7 Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005739 - mitochondrion
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0005524 - ATP binding
 PO:0009005 - root
Os07g0687000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g48760.1
CIPK04 OsCIPK04
CIPK4
OsCIPK4
OsSnRK3.35
SnRK3.35
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4 CBL-interacting protein kinase 4
Sucrose nonfermenting-1-related protein kinase 3.35
 12 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os12g0603700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g41090.1
CIPK05 OsCIPK05
CIPK5
OsCIPK5
OsSTA7
OsSnRK3.2
SnRK3.2
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5 CBL-interacting protein kinase 5
Sucrose nonfermenting-1-related protein kinase 3.2
 1 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0042742 - defense response to bacterium
GO:0031348 - negative regulation of defense response
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
 TO:0000203 - bacterial leaf streak disease resistance
TO:0000114 - flooding related trait
TO:0000303 - cold tolerance
 PO:0009066 - anther
PO:0009049 - inflorescence
Os01g0206700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10890.1
CIPK06 OsCIPK06
CIPK6
OsCIPK6
OsSnRK3.28
SnRK3.28
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6 CBL-interacting protein kinase 6
Sucrose nonfermenting-1-related protein kinase 3.28
 8 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0007165 - signal transduction
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0009047 - stem
Os08g0441100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g34240.1
CIPK08 OsCIPK08
CIPK8
OsCIPK8
OsSnRK3.4
SnRK3.4
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8 CBL-interacting protein kinase 8
Sucrose nonfermenting-1-related protein kinase 3.4
 1 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
GO:0060359 - response to ammonium ion
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000114 - flooding related trait
 PO:0009047 - stem
PO:0009049 - inflorescence
Os01g0536000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g35184.2
LOC_Os01g35184.1
CIPK09 OsCIPK09
CIPK9
OsCIPK9
OsSnRK3.10
SnRK3.10
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9 CBL-interacting protein kinase 9
Sucrose nonfermenting-1-related protein kinase 3.10
 3 Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0060359 - response to ammonium ion
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000227 - root length
TO:0006001 - salt tolerance
 PO:0009005 - root
Os03g0126800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03510.2
LOC_Os03g03510.1
CIPK10 OsCIPK10
OsSnRK3.12
SnRK3.12
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10 CBL-interacting protein kinase 10
Sucrose nonfermenting-1-related protein kinase 3.12
 3 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009651 - response to salt stress
GO:0005524 - ATP binding
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0006468 - protein amino acid phosphorylation
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os03g0339900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g22050.3
LOC_Os03g22050.1
LOC_Os03g22050.2
LOC_Os03g22050.4
CIPK11 OsCIPK11
OsMSURPK2
MSURPK2
OsSnRK3.7
SnRK3.7
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11 CBL-interacting protein kinase 11
Sucrose nonfermenting-1-related protein kinase 3.7
 1 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009414 - response to water deprivation
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0025034 - leaf
PO:0009047 - stem
Os01g0824600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g60910.1
LOC_Os01g60910.2
CIPK13 OsCIPK13
OsSnRK3.1
SnRK3.1
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13 Putative CBL-interacting protein kinase 13
Sucrose nonfermenting-1-related protein kinase 3.1
 1 Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 PO:0009005 - root
Os01g0206300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10870.1
CIPK14 OsCIPK14
OsSnRK3.33
SnRK3.33
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14 CBL-interacting protein kinase 14
Sucrose nonfermenting-1-related protein kinase 3.33
 12 Tolerance and resistance - Stress tolerance
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0050832 - defense response to fungus
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0009414 - response to water deprivation
GO:0009413 - response to flooding
GO:0060359 - response to ammonium ion
GO:0009409 - response to cold
 TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000255 - sheath blight disease resistance
TO:0000114 - flooding related trait
 PO:0009005 - root
Os12g0113500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g02200.1
LOC_Os12g02200.2
CIPK15 OsCIPK15
OsSnRK3.31
SnRK3.31
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15 CBL-interacting protein kinase 15
Sucrose nonfermenting-1-related protein kinase 3.31
Calcineurin B-like protein-interacting protein kinase 15
 11 Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0019722 - calcium-mediated signaling
GO:0042742 - defense response to bacterium
GO:0004674 - protein serine/threonine kinase activity
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0005524 - ATP binding
GO:0009413 - response to flooding
GO:0009651 - response to salt stress
GO:0009610 - response to symbiotic fungus
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000203 - bacterial leaf streak disease resistance
TO:0000276 - drought tolerance
TO:0000114 - flooding related trait
TO:0000175 - bacterial blight disease resistance
 PO:0009005 - root
Os11g0113700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g02240.1
CIPK16 OsCIPK16
OsSnRK3.29
SnRK3.29
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16 CBL-interacting protein kinase 16
Sucrose nonfermenting-1-related protein kinase 3.29
 9 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009005 - root
Os09g0418000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g25090.1
CIPK17 OsCIPK17
OsSnRK3.14
SnRK3.14
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17 CBL-interacting protein kinase 17
Sucrose nonfermenting-1-related protein kinase 3.14
 5 Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Character as QTL - Germination
Biochemical character
 GO:0046686 - response to cadmium ion
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0007165 - signal transduction
GO:0006952 - defense response
GO:0005737 - cytoplasm
GO:0009408 - response to heat
GO:0010187 - negative regulation of seed germination
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0030145 - manganese ion binding
 TO:0000112 - disease resistance
TO:0000259 - heat tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000352 - plant dry weight
TO:0000578 - root fresh weight
TO:0000227 - root length
TO:0000207 - plant height
 PO:0009005 - root
Os05g0136200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g04550.1
CIPK18 OsCIPK18
OsSnRK3.16
SnRK3.16
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18 CBL-interacting protein kinase 18
Sucrose nonfermenting-1-related protein kinase 3.16
 5 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0025034 - leaf
Os05g0332300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26820.1
PK4 OsCIPK19
OsPK4
OsPK04
Os-CIPK19
CIPK19
OsSnRK3.20
SnRK3.20
 PROTEIN KINASE 4 protein kinase 4
CBL-interacting protein kinase 19
CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 19
Sucrose nonfermenting-1-related protein kinase 3.20
 5 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0009651 - response to salt stress
GO:0009413 - response to flooding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000114 - flooding related trait
TO:0000276 - drought tolerance
 PO:0009010 - seed
PO:0009047 - stem
Os05g0514200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g43840.1
CIPK20 OsCIPK20
OsSnRK3.15
SnRK3.15
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20 CBL-interacting protein kinase 20
Sucrose nonfermenting-1-related protein kinase 3.15
 5 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
GO:0009413 - response to flooding
 TO:0000114 - flooding related trait
 PO:0009049 - inflorescence
Os05g0208100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g11790.1
CIPK21 OsCIPK21
OsSnRK3.24
SnRK3.24
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21 CBL-interacting protein kinase 21
Sucrose nonfermenting-1-related protein kinase 3.24
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0007165 - signal transduction
GO:0006468 - protein amino acid phosphorylation
GO:0009536 - plastid
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0030145 - manganese ion binding
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
 PO:0009005 - root
Os07g0637000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g44290.1
CIPK22 OsCIPK22
OsSnRK3.17
SnRK3.17
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22 CBL-interacting protein kinase 22
Sucrose nonfermenting-1-related protein kinase 3.17
 5 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
 PO:0025034 - leaf
Os05g0334750 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g26940.1
CIPK23 OsCIPK23
Os-CIPK23
OsSnRK3.23
SnRK3.23
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23 CBL-interacting protein kinase 23
CBL-Interacting Protein Kinase23
Sucrose nonfermenting-1-related protein kinase 3.23
 7 Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
GO:0006468 - protein amino acid phosphorylation
GO:0005739 - mitochondrion
GO:0005524 - ATP binding
GO:0050687 - negative regulation of defense response to virus
GO:0004674 - protein serine/threonine kinase activity
GO:0005634 - nucleus
GO:0009414 - response to water deprivation
GO:0060359 - response to ammonium ion
GO:0009651 - response to salt stress
 TO:0000276 - drought tolerance
TO:0000514 - potassium uptake
TO:0001034 - relative plant height
TO:0006001 - salt tolerance
TO:0000207 - plant height
TO:0000213 - rice grassy stunt 1 and 2 virus resistance
 PO:0009005 - root
Os07g0150700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g05620.2
LOC_Os07g05620.1
SOS2 CIPK24
OsCIPK24
OsSOS2
OsSnRK3.22
SnRK3.22
 SALT OVERLY SENSITIVE 2 CBL-interacting protein kinase 24
salt overly sensitive 2
low-cesium rice mutant 1
Sucrose nonfermenting-1-related protein kinase 3.22
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0009705 - plant-type vacuole membrane
GO:0030145 - manganese ion binding
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009005 - root
PO:0009047 - stem
PO:0025034 - leaf
PO:0000025 - root tip
Os06g0606000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40370.1
CIPK25 OsCIPK25
OsSnRK3.21
SnRK3.21
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25 CBL-interacting protein kinase 25
Sucrose nonfermenting-1-related protein kinase 3.21
 6 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os06g0543400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g35160.1
CIPK26 OsCIPK26
OsSnRK3.8
SnRK3.8
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26 CBL-interacting protein kinase 26
Sucrose nonfermenting-1-related protein kinase 3.8
 2 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
 PO:0009047 - stem
Os02g0161000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g06570.1
LOC_Os02g06570.2
CIPK27 OsCIPK27
OsSnRK3.30
SnRK3.30
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27 Putative CBL-interacting protein kinase 27
Sucrose nonfermenting-1-related protein kinase 3.30
 9 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009409 - response to cold
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 TO:0000303 - cold tolerance
 PO:0009049 - inflorescence
Os09g0418500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g25100.1
LOC_Os09g25110.1
CIPK28 OsCIPK28
OsSnRK3.18
SnRK3.18
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28 CBL-interacting protein kinase 28
Sucrose nonfermenting-1-related protein kinase 3.18
 5 Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0007165 - signal transduction
GO:0030145 - manganese ion binding
 PO:0009049 - inflorescence
Os05g0476350 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g39870.1
CIPK29 OsCIPK29
OsSnRK3.25
SnRK3.25
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29 CBL-interacting protein kinase 29
Sucrose nonfermenting-1-related protein kinase 3.25
 7 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0007165 - signal transduction
GO:0009414 - response to water deprivation
GO:0009409 - response to cold
GO:0009651 - response to salt stress
GO:0006468 - protein amino acid phosphorylation
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
GO:0030145 - manganese ion binding
 TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0009049 - inflorescence
Os07g0678300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g48090.1
CIPK30 OsCIPK30
OsSnRK3.5
SnRK3.5
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30 CBL-interacting protein kinase 30
Sucrose nonfermenting-1-related protein kinase 3.5
 1 Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0007165 - signal transduction
GO:0009413 - response to flooding
GO:0030145 - manganese ion binding
 TO:0000114 - flooding related trait
 PO:0009049 - inflorescence
Os01g0759200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g55440.1
HKT7 OsHKT7
OsHKT1;4
HKT1;4
 HIGH-AFFINITY K+ TRANSPORTER 7 Oryza sativa High-affinity K+ Transporter 7
Probable cation transporter HKT7
 4 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0009741 - response to brassinosteroid stimulus
GO:0016021 - integral to membrane
GO:0005886 - plasma membrane
GO:0009651 - response to salt stress
GO:0030955 - potassium ion binding
GO:0031402 - sodium ion binding
GO:0055085 - transmembrane transport
GO:0034059 - response to anoxia
GO:0006814 - sodium ion transport
GO:0006813 - potassium ion transport
GO:0015079 - potassium ion transmembrane transporter activity
 TO:0006001 - salt tolerance
TO:0002677 - brassinosteroid sensitivity
 PO:0009006 - shoot system
PO:0020104 - leaf sheath
PO:0009047 - stem
PO:0009005 - root
Os04g0607600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g51830.1
HMA9 OsHMA9
oshma9-1
oshma9-2
HMA9
OsHMP33
HMP33
 HEAVY METAL ATPASE 9 Oryza sativa heavy metal ATPase 9
HEAVY METAL ATPASE 9
heavy metal P-Type ATPase 9
Heavy metal-associated protein 33
 6 Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0043682 - copper-transporting ATPase activity
GO:0070574 - cadmium ion transmembrane transport
GO:0046688 - response to copper ion
GO:0015691 - cadmium ion transport
GO:0009873 - ethylene mediated signaling pathway
GO:0005794 - Golgi apparatus
GO:0016021 - integral to membrane
GO:0046873 - metal ion transmembrane transporter activity
GO:0010288 - response to lead ion
GO:0010043 - response to zinc ion
GO:0046686 - response to cadmium ion
GO:0016020 - membrane
GO:0010119 - regulation of stomatal movement
 TO:0000080 - micronutrient sensitivity
TO:0000351 - zinc sensitivity
TO:0000021 - copper sensitivity
 Os06g0665800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g45500.1
HPL3 OsHPL3
CYP74B2
OsCYP74B2
 HYDROPEROXIDE LYASE 3 2 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Lesion mimic
 GO:0042742 - defense response to bacterium
GO:0002213 - defense response to insect
GO:0009055 - electron carrier activity
GO:0016829 - lyase activity
GO:0009753 - response to jasmonic acid stimulus
GO:0031407 - oxylipin metabolic process
GO:0009695 - jasmonic acid biosynthetic process
GO:0010597 - green leaf volatile biosynthetic process
GO:0051607 - defense response to virus
GO:0020037 - heme binding
GO:0009941 - chloroplast envelope
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0009611 - response to wounding
 TO:0000175 - bacterial blight disease resistance
TO:0000424 - brown planthopper resistance
TO:0000063 - mimic response
TO:0000172 - jasmonic acid sensitivity
TO:0000020 - black streak dwarf virus resistance
TO:0002668 - jasmonic acid content
TO:0000454 - stem borer resistance
TO:0000396 - grain yield
TO:0000148 - viral disease resistance
 Os02g0110200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g02000.1
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/rice/oryzabase