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Gene Ontology Plant Ontology Trait Ontology Trait Class

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Search Condition : Filter((traitClassFacetEn:030_Seed - Physiological traits OR traitClassFacetEn:031_Seed - Physiological traits - Dormancy OR traitClassFacetEn:032_Seed - Physiological traits - Longevity OR traitClassFacetEn:033_Seed - Physiological traits - Storage substances OR traitClassFacetEn:034_Seed - Physiological traits - Shattering OR traitClassFacetEn:035_Seed - Physiological traits - Taste))
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CGSNL
Gene
Symbol
Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID Mutant
Image
AE1 ae1
AMYLOSE EXTENDER 1 amylose extender1
amylose extender 1
amylose extender-1
Seed - Physiological traits - Storage substances
GO:0007275 - multicellular organismal development
GO:0000271 - polysaccharide biosynthetic process
TO:0000098 - glutinous endosperm
TO:0000487 - endosperm color
TO:0000587 - endosperm quality
TO:0000196 - amylose content
PO:0009089 - endosperm
-
AE2 ae2(t)
ae2
AMYLOSE EXTENDER 2 amylose extender2
amylose extender 2
amylose extender-2
Seed - Physiological traits - Storage substances
GO:0007275 - multicellular organismal development
GO:0000271 - polysaccharide biosynthetic process
TO:0000196 - amylose content
TO:0000098 - glutinous endosperm
TO:0000487 - endosperm color
TO:0000587 - endosperm quality
PO:0009089 - endosperm
-
AM Am(t)*
Am
HIGH AMYLOSE High amylose
Seed - Physiological traits - Storage substances
GO:0016051 - carbohydrate biosynthetic process
TO:0000196 - amylose content
TO:0000098 - glutinous endosperm
PO:0009089 - endosperm
-
DU2 du2
DULL ENDOSPERM 2 dull endosperm2
dull endosperm 2
dull endosperm-2
Seed - Physiological traits - Storage substances
GO:0009568 - amyloplast starch grain
GO:0005976 - polysaccharide metabolic process
TO:0000105 - dull endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
DU3 du3
OsCBP20
OsCBP20/du3
CBP20
DULL ENDOSPERM 3 dull endosperm3
dull endosperm 3
dull endosperm-3
dull 3
cap-binding protein 20
2 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
GO:0006370 - mRNA capping
GO:0009568 - amyloplast starch grain
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0031053 - primary microRNA processing
GO:0006970 - response to osmotic stress
GO:0009408 - response to heat
GO:0005976 - polysaccharide metabolic process
GO:0005846 - nuclear cap binding complex
GO:0005737 - cytoplasm
GO:0005634 - nucleus
GO:0045292 - nuclear mRNA cis splicing, via spliceosome
GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation
GO:0000339 - RNA cap binding
GO:0000166 - nucleotide binding
TO:0000095 - osmotic response sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000432 - temperature response trait
TO:0000196 - amylose content
TO:0000105 - dull endosperm
TO:0000429 - salt sensitivity
PO:0009089 - endosperm
Os02g0612300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
DU5 du5
DULL ENDOSPERM 5 dull endosperm5
dull endosperm 5
dull endosperm-5
Seed - Physiological traits - Storage substances
GO:0009568 - amyloplast starch grain
GO:0005976 - polysaccharide metabolic process
TO:0000105 - dull endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
ESP4 Esp4
10/16-H
ENDOSPERM STORAGE PROTEIN 4 Endosperm storage protein4
Endosperm storage protein 4
regulatory gene for PB-I.
Endosperm storage protein-4
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009089 - endosperm
-
GLC glc
GEL CONSISTENCY gel consistency(hard)
gel consistency
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000211 - gel consistency
PO:0009010 - seed
-
GLU2 Glu2*(Gt1)
Gt1
Glu2
GLUTELIN 2 Rice glutelin2
Rice glutelin 2
Rice glutelin-2
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU3 Glu3*(Gt3)
Gt3
Glu3
GLUTELIN 3 Rice glutelin3
Rice glutelin 3
Rice glutelin-3
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU4 Glu4*
Glu4
OsGLU4
GLUTELIN 4 Rice glutelin4
Rice glutelin-4
glutelin-4
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU5 Glu5*
Glu5
OsGLU5
GLUTELIN 5 Rice glutelin5
Rice glutelin 5
Rice glutelin-5
glutelin-5
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU6 Glu6*(GluA4)
Glu6
GluA4
GluA-4
GLUTELIN 6 Rice glutelin6
Rice glutelin 6
Rice glutelin-6
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU7 Glu7*(GluB2)
Glu7
GluB2
GLUB2
GLUB-2
GluB-2
GluB-7
GLUB7
GLUTELIN 7 Rice glutelin7
Rice glutelin-7
Glutelin type-B 2 precursor
Glutelin type-B 2
Glutelin type-B 7
Glutelin type-B 2 acidic chain
Glutelin type-B 2 basic chain
2 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
Os02g0249600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
GLUA2 Glua2*
Glua2
GLUA-2
GluA-2
Glu20
GluA2
OsEnS-137
GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES Glutelin subfamily A2 from wild rice species
Glutelin type-A 2 precursor
Glutelin type-A 2
Glutelin type II
Glutelin type-A 2 acidic chain
Glutelin type-A 2 basic chain
Glutelin subfamily A-2 from wild rice species
Rice glutelin-20
glutelin-20
endosperm-specific gene 137
10 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
TO:0000490 - protein composition related trait
PO:0009010 - seed
Os10g0400200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
GT Gt(t)*
Gt
HIGH GELATINIZATION TEMPERATURE High gelatinization temperature
Seed - Physiological traits - Taste
GO:0016051 - carbohydrate biosynthetic process
TO:0000462 - gelatinization temperature
PO:0009089 - endosperm
-
H(T)* H(t)*
Hcr
HARDNESS OF COOKED RICE Hardness of cooked rice
Seed - Physiological traits - Taste
GO:0016051 - carbohydrate biosynthetic process
TO:0000489 - carbohydrate composition related trait
TO:0000587 - endosperm quality
PO:0009089 - endosperm
-
LOX3 Lox3*
lox3(t)
LOX-3
Lox3
OsLOX4
LOX4
LIPOXYGENASE 3 Lipoxygenase3
Lipoxygenase 3
Lipoxygenase-3
Putative lipoxygenase 3
Lipoxygenase 4
3 Seed - Physiological traits - Taste
GO:0005506 - iron ion binding
GO:0016165 - lipoxygenase activity
GO:0055114 - oxidation reduction
GO:0031408 - oxylipin biosynthetic process
TO:0000488 - seed composition based quality trait
PO:0009010 - seed
Os03g0700400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
PROL Prol*
Pro6
PROLAMIN Prolamin
Prolamin-6
Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
SDRA Sdra (Sd)
Sdra
Sdua
Sdr6
SEED DORMANCY A Seed dormancy-a
Seed dormancy-6
Seed - Physiological traits - Dormancy
GO:0009845 - seed germination
TO:0000253 - seed dormancy
PO:0009010 - seed
-
SDRB Sdrb
Sdub
Sdr7
SEED DORMANCY B Seed dormancy-b
Seed dormancy-7
Seed - Physiological traits - Dormancy
GO:0009845 - seed germination
TO:0000253 - seed dormancy
PO:0009010 - seed
-
SG Sg
PERMEABILITY OF TESTA TO WATER Permeability of testa to water
Seed - Physiological traits - Dormancy
GO:0009845 - seed germination
TO:0000253 - seed dormancy
PO:0009010 - seed
-
SK1 Sk1
Fgr
SCENTED KERNEL 1 Scented kernel1
Scented kernel 1
Scented kernel-1
Seed - Physiological traits - Taste
GO:0009698 - phenylpropanoid metabolic process
TO:0000087 - aroma
PO:0000003 - whole plant
PO:0009010 - seed
PO:0009011 - plant structure
-
TH Th
HARD THRESHABILITY Hard threshability
Seed - Physiological traits - Shattering
GO:0009838 - abscission
TO:0000406 - panicle threshability
PO:0009049 - inflorescence
-
GLU1 Glu1(Srp1, Gt2)
Srp
Gt2
Glu1
GLUTELIN 1 Rice glutelin1
Rice glutelin 1
Rice glutelin-1
1 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU1 Glu1t*(Glu1)
Glu1t*
Glu1t
Glu1
Glu12
GLUTELIN 1 Glutelin subunit1
Glutelin subunit 1
Glutelin subunit-1
Rice glutelin-12
1 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU2 Glu2t*(Glu2)
Glu2t*
Glu2t
Glu2
Glu13
GLUTELIN 2 Glutelin subunit2
Glutelin subunit 2
Glutelin subunit-2
Rice glutelin-13
1 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU3 glu3(t)*
glu10
LGLU3
GLUTELIN 3 lack of glutelin subunit3
lack of glutelin subunit 3
lack of glutelin subunit-3
rice glutelin-10
1 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU3 Glu3t*(Glu3)
Glu3t*
Glu3t
Glu3
Glu14
GLUTELIN 3 Glutelin subunit3
Glutelin subunit 3
Glutelin subunit-3
Rice glutelin-14
1 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
SH2 sh2
SHATTERING 2 shattering2
shattering 2
shattering-2
1 Seed - Physiological traits - Shattering
TO:0000473 - grain shattering
PO:0009010 - seed
-
SHR1 shr1
sh1
shr
SHRUNKEN ENDOSPERM 1 shrunken endosperm1
shrunken endosperm 1
shrunken eudosperm-1
shrunken
1 Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
GO:0009568 - amyloplast starch grain
TO:0000266 - chalky endosperm
TO:0002655 - starch grain size
TO:0002658 - starch grain synthesis
TO:0000100 - shrunken endosperm
TO:0000587 - endosperm quality
PO:0009089 - endosperm
-
AE3 ae3(t)*
ae3
AMYLOSE EXTENDER 3 amylose extender3
amylose extender 3
amylose extender-3
2 Seed - Physiological traits - Storage substances
GO:0007275 - multicellular organismal development
GO:0000271 - polysaccharide biosynthetic process
TO:0000487 - endosperm color
TO:0000587 - endosperm quality
TO:0000196 - amylose content
TO:0000098 - glutinous endosperm
PO:0009089 - endosperm
-
GLU10 Glu10t*
GLUTELIN 10 Glutelin subunit10
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
-
GLU4 Glu4t*(Glu4)
Glu4
Glu4t
Glu4t*
Glu15
GLUTELIN 4 Glutelin subunit4
Glutelin subunit 4
Glutelin subunit-4
Rice glutelin-15
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU5 Glu5t*(Glu5)
Glu5
Glu5t
Glu5t*
GLUTELIN 5 Glutelin subunit5
Glutelin subunit 5
Glutelin subunit-5
Rice glutelin-16
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU6 Glu6t*(Glu6,GluB,C,E)
GluE
GluB
Glu6t*
GluC
Glu6t
Glu6
Glu17
GLUTELIN 6 Glutelin subunit6
Glutelin subunit 6
Glutelin subunit-6
Rice glutelin-17
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU7 Glu7t*(Glu7,GluA)
GluA
Glu7t
Glu7
Glu18
GLUTELIN 7 Glutelin subunit7
Glutelin subunit 7
Glutelin subunit-7
Rice glutelin-18
2 Seed - Physiological traits - Storage substances
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
GLU8 Glu8t*(GluE)
GLUTELIN 8 Glutelin subunit8
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
-
GLU9 Glu9t*
GLUTELIN 9 Glutelin subunit9
2 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
-
SH4 sh4
sh4(t)*(sh3)
sh3
sh4
SHATTERING 4 shattering4
shattering 4
shattering-4
SHATTERING
3 Seed - Physiological traits - Shattering
TO:0000473 - grain shattering
PO:0009010 - seed
-
FLO flo(t)*
flo3
FLOURY ENDOSPERM floury endosperm
floury endosperm 3
floury endosperm-3
4 Seed - Physiological traits - Storage substances
GO:0005976 - polysaccharide metabolic process
GO:0009568 - amyloplast starch grain
TO:0000266 - chalky endosperm
TO:0000104 - floury endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
GLUP3 glup3(esp7)
esp7
glup3
OsVPE1
VPE1
OsaLeg3
GLUTELIN PRECURSOR 3 glutelin precursor3
glutelin precursor 3
glutelin precursor-3
vacuolar processing enzyme 1
legumain 3
4 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
GO:0045735 - nutrient reservoir activity
GO:0006508 - proteolysis
GO:0008234 - cysteine-type peptidase activity
GO:0000327 - lytic vacuole within protein storage vacuole
TO:0000615 - abscisic acid sensitivity
TO:0000490 - protein composition related trait
TO:0000164 - stress trait
TO:0000429 - salt sensitivity
TO:0000109 - endosperm storage protein-2 content
PO:0009089 - endosperm
Os04g0537900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
HPG1* hpg1*
hpg1
HIGH PREPROGLUTELIN1 high preproglutelin1
high preproglutelin 1
high preproglutelin-1
4 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
SH3 Sh3
SHATTERING 3 Shattering3
Shattering 3
Shattering-3
4 Seed - Physiological traits - Shattering
TO:0000473 - grain shattering
PO:0009010 - seed
-
GLUP4 glup4(esp8)
esp8
glup4
OsRab5B2
Rab5a
OsRab5a
gpa1
GPA1/Rab5a
GPA
GLUTELIN PRECURSOR 4 glutelin precursor4
glutelin precursor 4
glutelin precursor-4
small GTP-binding protein OsRab5B2
small GTP-binding protein OsRab5a
glutelin precursor mutant4
glutelin precursor accumulation 1
12 Seed - Physiological traits - Storage substances
GO:0005768 - endosome
GO:0045735 - nutrient reservoir activity
GO:0007264 - small GTPase mediated signal transduction
GO:0005886 - plasma membrane
GO:0015031 - protein transport
GO:0005525 - GTP binding
TO:0000490 - protein composition related trait
TO:0000109 - endosperm storage protein-2 content
PO:0009010 - seed
Os12g0631100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
PRO2 Pro2*
Pro2
PROLAMIN 2 Prolamin2
Prolamin 2
Prolamin-2
5 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
PRO3 Pro3*
Pro3
PROLAMIN 3 Prolamin3
Prolamin 3
Prolamin-3
5 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
PRO5 Pro5*
Pro5
PROLAMIN 5 Prolamin5
Prolamin 5
Prolamin-5
5 Seed - Physiological traits - Storage substances
GO:0045735 - nutrient reservoir activity
TO:0000490 - protein composition related trait
PO:0009010 - seed
-
FLO1 flo1
flo1-1
o
FLOURY ENDOSPERM 1 floury endosperm1
floury endosperm 1
opaque
floury endosperm-1
5 Seed - Physiological traits - Storage substances
GO:0009568 - amyloplast starch grain
GO:0005976 - polysaccharide metabolic process
TO:0000104 - floury endosperm
TO:0000266 - chalky endosperm
PO:0009089 - endosperm
-
DU2035 du2035*
du9
du2035
DULL ENDOSPERM 2035 dull endosperm(2035)
dull endoaperm (2035)
dull endosperm-9
6 Seed - Physiological traits - Storage substances
GO:0005976 - polysaccharide metabolic process
GO:0009568 - amyloplast starch grain
TO:0000105 - dull endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
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