Gene - List

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List of Gene

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CGSNL
Gene
Symbol
Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID Mutant
Image
ACP3 Acp3
ACID PHOSPHATASE 3 Acid phosphatase3
Acid phosphatase 3
Acid phosphatase-3
Biochemical character
GO:0003993 - acid phosphatase activity
-
CNX1 cnx1*
cnx1
cnx 1
COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1 molybden cofactor1
molybden cofactor 1
molybdenum cofactor for nitrate reductase-1
cofactor for nitrate reductase and xanthine dehydrogenase 1
Biochemical character
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process
GO:0016612 - molybdenum-iron nitrogenase complex
GO:0016163 - nitrogenase activity
PO:0009006 - shoot system
PO:0009025 - vascular leaf
-
CNX2 cnx2*
cnx2
cnx 2
COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2 molybden cofactor2
molybden cofactor 2
molybdenum cofactor for nitrate reductase-2
cofactor for nitrate reductase and xanthine dehydrogenase 2
Biochemical character
GO:0016612 - molybdenum-iron nitrogenase complex
GO:0016163 - nitrogenase activity
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process
PO:0009006 - shoot system
PO:0009025 - vascular leaf
-
CNX3 cnx3*
cnx3
cnx 3
COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3 molybden cofactor3
molybden cofactor 3
molybdenum cofactor for nitrate reductase-3
cofactor for nitrate reductase and xanthine dehydrogenase 3
Biochemical character
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process
GO:0016612 - molybdenum-iron nitrogenase complex
GO:0016163 - nitrogenase activity
PO:0009006 - shoot system
PO:0009025 - vascular leaf
-
DIA1 Dia1(t)*
Dia1
DIAPHORASE 1 Diaphorase1
Diaphorase 1
Diaphorase-1
Biochemical character
GO:0003959 - NADPH dehydrogenase activity
GO:0004148 - dihydrolipoyl dehydrogenase activity
-
DIA2 Dia2(t)*
Dia2
DIAPHORASE 2 Diaphorase2
Diaphorase 2
Diaphorase-2
Biochemical character
GO:0003959 - NADPH dehydrogenase activity
GO:0004148 - dihydrolipoyl dehydrogenase activity
-
EST11 Est11(t)
Est11
ESTERASE 11 Esterase11
Esterase 11
Esterase-11
Biochemical character
GO:0016787 - hydrolase activity
GO:0016788 - hydrolase activity, acting on ester bonds
-
EST4 Est4
ESTERASE 4 Esterase4
Esterase 4
Esterase-4
Biochemical character
GO:0016787 - hydrolase activity
GO:0016788 - hydrolase activity, acting on ester bonds
-
EST6 Est6
ESTERASE 6 Esterase6
Esterase 6
Esterase-6
Biochemical character
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016787 - hydrolase activity
-
EST8 Est8
ESTERASE 8 Esterase8
Esterase 8
Esterase-8
Biochemical character
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016787 - hydrolase activity
-
G6PD1 G6pd1(t)*
G6pd1
GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1 Glucose-6-phosphate dehydrogenase1
Glucose-6-phosphate dehydrogenase 1
Glucose-6-phosphate dehydrogenase-1
Biochemical character
GO:0004345 - glucose-6-phosphate dehydrogenase activity
-
MAL3 Mal3(t)), Mal3
MALATE DEHYDROGENASE(NADP) 3 Malate dehydrogenase(NADP)3
Biochemical character
GO:0016615 - malate dehydrogenase activity
-
MAL4 Mal4(t)*
Mal4
MALATE DEHYDROGENASE(NADP) 4 Malate dehydrogenase(NADP)4
Biochemical character
GO:0016615 - malate dehydrogenase activity
-
MDH1 Mdh1
MALATE DEHYDROGENASE(NAD) 1 Malate dehydrogenase(NAD)1
Malate dehydrogenase (NAD) 1
Malate dehydrogenase (NAD)-1
Biochemical character
GO:0016615 - malate dehydrogenase activity
GO:0030060 - L-malate dehydrogenase activity
-
MDH2 Mdh2(t)*
Mdh2(t)
Mdh2
MALATE DEHYDROGENASE(NAD) 2 Malate dehydrogenase(NAD)2
Malate dehydrogenase (NAD) 2
Malate dehydrogenase (NAD)-2
Biochemical character
GO:0016615 - malate dehydrogenase activity
-
PGI3 Pgi3
PHOSPHOGLUCOISOMERASE 3 Phosphoglucoisomerase3
Phosphoglucoisomerase 3
Phosphoglucoisomerase-3
Biochemical character
GO:0004347 - glucose-6-phosphate isomerase activity
-
RCP Rcp
RECEPTOR GENE FOR PEROXIDASE Receptor gene for peroxidase
Biochemical character
GO:0004601 - peroxidase activity
-
REG1-2A Reg1-2A
Reg1
REGULATOR GENE FOR PEROXIDASE1 Regulator gene for peroxidase1
Regulator gene for peroxidase 1
Regulator gene for peroxidase-1
Regulator-1
Biochemical character
GO:0004601 - peroxidase activity
GO:0030234 - enzyme regulator activity
-
REG2-4A Reg2-4A
Reg2
REGULATOR GENE FOR PEROXIDASE2 Regulator gene for peroxidase2
Regulator gene for peroxidase 2
Regulator gene for peroxidase-2
Regulator-2
Biochemical character
GO:0030234 - enzyme regulator activity
GO:0004601 - peroxidase activity
-
RLB-4C RLB-4C
Reg3
REGULATOR GENE FOR PEROXIDASE Regulator gene for peroxidase
Regulator gene for peroxydase (leaf blade)
Regulator-3
Biochemical character
GO:0030234 - enzyme regulator activity
GO:0004601 - peroxidase activity
-
RLS-4C RLS-4C
Reg4
REGULATOR GENE FOR PEROXIDASE Regulator gene for peroxidase
Regulator gene for peroxydase (leaf blade)
Regulator-4
Biochemical character
GO:0004601 - peroxidase activity
GO:0030234 - enzyme regulator activity
-
SUD1 Sud1(t)*
Sud1(t)
Sud1
SUCCINATE DEHYDROGENASE 1 Succinate dehydrogenase1
Succinate dehydrogenase 1
Succinate dehydrogenase-1
Biochemical character
GO:0000104 - succinate dehydrogenase activity
-
SUD2 Sud2(t)*
Sud2(t)
Sud2
SUCCINATE DEHYDROGENASE 2 Succinate dehydrogenase2
Succinate dehydrogenase 2
Succinate dehydrogenase-2
Biochemical character
GO:0000104 - succinate dehydrogenase activity
-
SUD3 Sud3(t)*
Sud3(t)
Sud3
SUCCINATE DEHYDROGENASE 3 Succinate dehydrogenase3
Succinate dehydrogenase 3
Succinate dehydrogenase-3
Biochemical character
GO:0000104 - succinate dehydrogenase activity
-
TPIL(T)* Tpil(t)*
Tpi1(t)
Tpi1
TRIOSEPHOSPHATE ISOMERASE1 Triosephosphate isomerase1
Triosephosphate isomerase 1
Triosephosphate isomerase-1
Biochemical character
GO:0004807 - triose-phosphate isomerase activity
-
XDH1 Xdh1(t)*
Xdh1(t)
Xdh1
XANTHINE DEHYDROGENASE 1 xanthine dehydrogenase
Xanthine dehydrogenase-1
Biochemical character
GO:0004854 - xanthine dehydrogenase activity
-
ALD2 Ald2*(ald2)
Ald2
ald2
ALDOLASE 2 Aldolase2
Aldolase 2
Aldolase-2
1 Biochemical character
GO:0016832 - aldehyde-lyase activity
-
AMY1B Amy1B*(RAmy1B)
AMYC
RAmy1B
Amy2
Amy1B
Osamy-c
OSamy-c
OSamy--c
ALPHA-AMYLASE 1B Alpha-amylase1B
Alpha-amylase isozyme C
Alpha-amylase isozyme 1B
Alpha-amylase-1B
Amylase-2
ALPHA-AMYLASE 1-3
alpha-amylase c
high PI alpha amylase
1 Biochemical character
GO:0005975 - carbohydrate metabolic process
GO:0004556 - alpha-amylase activity
GO:0005509 - calcium ion binding
Os01g0357400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
ARF2 Arf2*
Arf2
ARF-2
ADP RIBOSYLATION FACTOR 2 ADP ribosylation factor(ARF)2
ADP ribosylation factor (ARF)-2
ADP ribosylation factor-2
ADP ribosylation factor 2
1 Biochemical character
GO:0006471 - protein amino acid ADP-ribosylation
GO:0006886 - intracellular protein transport
-
EST10 Est10
ESTERASE 10 Esterase10
Esterase 10
Esterase-10
1 Biochemical character
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016787 - hydrolase activity
-
EST5 Est5
ESTERASE 5 Esterase5
Esterase 5
Esterase-5
1 Biochemical character
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016787 - hydrolase activity
-
GOT1 Got1
Aat1
OsAAT
GOT-A
GLUTAMATE OXALOACETATE TRANSAMINASE 1 Aspartate aminotransferase1
Aspartate aminotransferase 1
Aspartate aminotransferase-1
1 Biochemical character
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity
-
ICD1 Icd1
ISOCITRATE DEHYDROGENASE 1 Isocitrate dehydrogenase1
Isocitrate dehydrogenase 1
Isocitrate dehydrogenase-1
1 Biochemical character
GO:0004449 - isocitrate dehydrogenase (NAD+) activity
GO:0004448 - isocitrate dehydrogenase activity
-
OC1 Oc1*
Oc1
OC-I
SPOC-I
OsCP1
Oc
OCI
OsCYS1
ORYZACYSTATIN 1 Oryzacystatin1
Oryzacystatin-1
Oryzacystatin I
Oryzacystatin-I
Cysteine proteinase inhibitor 1
cystatin-I
oryzacystatin
1 Biochemical character
Tolerance and resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
GO:0030414 - peptidase inhibitor activity
GO:0004869 - cysteine-type endopeptidase inhibitor activity
GO:0005576 - extracellular region
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0006952 - defense response
TO:0000054 - animal damage resistance
TO:0000432 - temperature response trait
Os01g0803200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
TOS1 Tos1*
Tos1
Osr14
Tos4
RETROTRANSPOSON 1 Retrotransposon1
Retrotransposon 1
Retrotransposon-1
LTR retrotransposon Osr14
1 Biochemical character
GO:0004803 - transposase activity
GO:0006313 - transposition, DNA-mediated
-
TPI tpi*
tips
TI
TRIOSEPHOSPHATE ISOMERASE triosephosphate isomerase (cloned gene)
triosephosphate isomerase
Triosephosphate isomerase
cytosolic
Triose-phosphate isomerase
triosephosphate isomerase-2
Cytosolic Triosephosphate lsomerase
Triose-phosphate isomerase
1 Biochemical character
Tolerance and resistance - Stress tolerance
GO:0004807 - triose-phosphate isomerase activity
GO:0006633 - fatty acid biosynthetic process
GO:0005737 - cytoplasm
GO:0006096 - glycolysis
GO:0006098 - pentose-phosphate shunt
GO:0006094 - gluconeogenesis
Os01g0147900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
TRYP TRYP*(tin)
TRYP*
tin
Tryp
TRYPSIN INHIBITOR Trypsin-inhibitor
1 Biochemical character
GO:0030304 - trypsin inhibitor activity
-
RD Rd
DFR
OsDFR
OS-DFR
RED PERICARP AND SEED COAT Red pericarp and seed coat
dihydroflavonol 4-reductase
dihydroflavonol-4-reductase
1 Biochemical character
Coloration - Anthocyanin
Coloration - Others
Seed
Tolerance and resistance - Stress tolerance
GO:0003824 - catalytic activity
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0044237 - cellular metabolic process
GO:0050662 - coenzyme binding
GO:0051555 - flavonol biosynthetic process
TO:0000707 - pericarp color
TO:0000487 - endosperm color
TO:0000190 - seed coat color
TO:0000486 - seed color
TO:0000075 - light sensitivity
PO:0009088 - seed coat
PO:0009089 - endosperm
Os01g0633500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
EST Est I2*
EstI2*
Est15
ESTL2
ESTERASE 1 Esterase14
Esterase-I2
Esterase-15
1 Biochemical character
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016787 - hydrolase activity
-
AMP1 Amp1(Lap1,LapF)
LapF
Lap1
Amp1
AMINOPEPTIDASE 1 Aminopeptidase1
Aminopeptidase 1
Aminopeptidase-1
2 Biochemical character
GO:0004177 - aminopeptidase activity
-
ANT ant
ricANC1
ANC1
ADENOSINE NUCLEOTIDE TRANSLOCATOR adenine nucleotide translocator
"ADP
ATP carrier protein
mitochondrial precursor"
"ADP
ATP carrier protein
mitochondrial"
ADP/ATP translocase
ATP/ADP translocator
2 Biochemical character
GO:0000295 - adenine nucleotide transmembrane transporter activity
GO:0016021 - integral to membrane
GO:0055085 - transmembrane transport
GO:0005488 - binding
GO:0005215 - transporter activity
GO:0015616 - DNA translocase activity
GO:0005743 - mitochondrial inner membrane
GO:0016020 - membrane
GO:0006810 - transport
Os02g0718900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
LRT2 CYC2
cyc2*
cyc2
OsCYP2
Cyp2
OsCYP19-2
CYP19-2
OsCYP-2
OsCyp2-P
OsCyp2
OsCYP19-1
LRT2/OsCYP2
lrt2*
lrt2
Ppcti
LATERAL ROOTLESS2 cyclophilin2
cyclophilin 2
cyclophilin-2
cyclophilin 19-2
LATERAL ROOTLESS 2
lateral-rootless 2
REDUCED GROWTH OF LATERAL ROOTS
reduced growth of lateral roots
lateral root-2
Peptidyl-prolyl cis-trans isomerase
2 Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
GO:0006457 - protein folding
GO:0050801 - ion homeostasis
GO:0048527 - lateral root development
GO:0042743 - hydrogen peroxide metabolic process
GO:0015994 - chlorophyll metabolic process
GO:0009651 - response to salt stress
GO:0009414 - response to water deprivation
GO:0016018 - cyclosporin A binding
GO:0005886 - plasma membrane
GO:0009507 - chloroplast
GO:0046686 - response to cadmium ion
GO:0009733 - response to auxin stimulus
GO:0009408 - response to heat
GO:0000413 - protein peptidyl-prolyl isomerization
GO:0004600 - cyclophilin
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity
GO:0009734 - auxin mediated signaling pathway
GO:0048046 - apoplast
GO:0009629 - response to gravity
GO:0007275 - multicellular organismal development
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0000276 - drought tolerance
TO:0000259 - heat tolerance
TO:0000163 - auxin sensitivity
TO:0000656 - root development trait
TO:0001013 - lateral root number
TO:0006001 - salt tolerance
TO:0002693 - gravity response trait
PO:0007520 - root development stage
PO:0009005 - root
Os02g0121300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
GOT3 Got3
Aat3
ASPARTATE AMINOTRANSFERASE 3 Aspartate aminotransferase3
Aspartate aminotransferase 3
Aspartate aminotransferase-3
2 Biochemical character
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity
-
GPD1 gpd1*
gpd1
GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 1 glyceraldehydephosphate dehydrogenase1
glyceraldehydephosphate dehydrogenase 1
glyceraldehyde-3-phosphate dehydrogenase-1
2 Biochemical character
GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
-
ACT1 act1
AC1
RAC1
RAc1
ACT11
OsACT1
ACTIN 1 Actin1
Actin-1
Actin1*(act1)
actin 1
Actin 11
3 Biochemical character
GO:0005737 - cytoplasm
GO:0003774 - motor activity
GO:0015629 - actin cytoskeleton
GO:0005524 - ATP binding
GO:0005856 - cytoskeleton
GO:0005515 - protein binding
Os03g0718100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
CDC cdc*
cdc
CDC2A PROTEIN CDC2a protein
3 Biochemical character
GO:0004693 - cyclin-dependent protein kinase activity
GO:0000279 - M phase
-
PHYA phyA
PHYA* (phyA)
PHYA*
Phya
PHY18
phy 18
OsPHYA
PHYTOCHROME A PhytochromeA
Phytochrome A
Phytochrome-A
3 Biochemical character
GO:0042803 - protein homodimerization activity
GO:0045449 - regulation of transcription
GO:0004871 - signal transducer activity
GO:0007165 - signal transduction
GO:0007623 - circadian rhythm
GO:0005739 - mitochondrion
GO:0000155 - two-component sensor activity
GO:0005524 - ATP binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0004673 - protein histidine kinase activity
GO:0016020 - membrane
GO:0007602 - phototransduction
GO:0018106 - peptidyl-histidine phosphorylation
GO:0018298 - protein-chromophore linkage
GO:0017006 - protein-tetrapyrrole linkage
GO:0009585 - red, far-red light phototransduction
GO:0006350 - transcription
GO:0007600 - sensory perception
GO:0008020 - G-protein coupled photoreceptor activity
Os03g0719800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
POXCA Pox cA*
Pox6
PEROXIDASE CA Peroxidase cA (cloned gene)
Peroxidase-cA(cloned gene)
Peroxidase-cA
Peroxidase-6
3 Biochemical character
GO:0004601 - peroxidase activity
-
RCH10 RCH10*
Cht13
Cht12
Rcht2
BASIC CHITINASE 10 Rice basic chitinase 10
Chitinase-13
Chitinase12
Basic endochitinase 2 precursor
Basic endochitinase 2
Chitinase 12
Pathogenesis related (PR)-3 chitinase 12
Chitinase-12
Class II chitinase homologues
3 Biochemical character
GO:0016998 - cell wall macromolecule catabolic process
GO:0006032 - chitin catabolic process
GO:0006040 - amino sugar metabolic process
GO:0016231 - beta-N-acetylglucosaminidase activity
GO:0008843 - endochitinase activity
GO:0050832 - defense response to fungus
GO:0051707 - response to other organism
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0008061 - chitin binding
GO:0004568 - chitinase activity
Os03g0418000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
SOD sod*
sod
SUPEROXIDE DISMUTASE superoxide dismutase
3 Biochemical character
GO:0004784 - superoxide dismutase activity
-
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