Gene - List

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List of Gene

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CGSNL
Gene
Symbol
Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
[CMS-54257] [cms-54257]*
[cms-54257]
CYTOPLASMIC MALE STERILITY 54257 Cytoplasmic mutant induced by somaclonal variation
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0000001 - mitochondrion inheritance
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009066 - anther
-
[CMS-AK]([CMS-JP]) [cms-ak]([cms-jp])
[cms-jp]
[cms-ak]
CYTOPLASMIC MALE STERILITY AK Akebono' cytoplasm
'Akebono' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
GO:0000001 - mitochondrion inheritance
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009066 - anther
-
[CMS-ARC] [cms-ARC]*
[cms-ARC] [mt]
[cms-ARC]
CYTOPLASMIC MALE STERILITY ARC ARC13829-16 cytoplasm
`ARC13829-26' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-BO] [cms-bo]
CYTOPLASMIC MALE STERILITY BO Chinsurah boro II' cytoplasm
`Chinsurah boro 2' cytoplasm
'Chinsurah boro II' cytoplasm
Mt Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0005739 - mitochondrion
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-CW] [cms-CW]
CYTOPLASMIC MALE STERILITY CW Chinese wild rice cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-GAM] [cms-GAM]*
[cms-GAM]
CYTOPLASMIC MALE STERILITY GAM Gambiaca cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-HL] [cms-HL]
CYTOPLASMIC MALE STERILITY HL HL group cytoplasm
HL-group cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-IR66707A] [cms-IR66707A]*
[cms-IR66707A]
CYTOPLASMIC MALE STERILITY IR66707A Oryza perennis Acc104823 cytoplasm
Oryza perennis Acc. 104823 cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-KALINGA-I] [cms-Kalinga-I]*
[cms-Kalinga-I]
CYTOPLASMIC MALE STERILITY KALINGA Cytoplasmic controlled cold tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0009409 - response to cold
GO:0007275 - multicellular organismal development
TO:0000280 - seedling vigor
TO:0000303 - cold tolerance
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0009006 - shoot system
PO:0009005 - root
PO:0020048 - microspore
-
[CMS-KHIABORO] [cms-Khiaboro]*
[cms-Khiaboro]
CYTOPLASMIC MALE STERILITY KHIABORO 'Khiaboro' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-ID] [cms-ld]
CYTOPLASMIC MALE STERILITY ID Lead rice' cytoplasm
'Lead rice' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-SP] [cms-sp]*
[cms-sp]
CYTOPLASMIC MALE STERILITY SP MS577A cytoplasm
`MS577A' cytoplasm
'MS577A' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-TA] [cms-TA]
CYTOPLASMIC MALE STERILITY TA TA820' cytoplasm
`TA820' cytoplasm
'TA820' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-UR102] [cms-UR102]*
[cms-UR102]
CYTOPLASMIC MALE STERILITY UR102 UR102F' cytoplasm
`UR102F' cytoplasm
'UR102F' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-UR104] [cms-UR104]*
[cms-UR104]
CYTOPLASMIC MALE STERILITY UR104 UR104F' cytoplasm
`UR104F' cytoplasm
'UR104F' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-UR106] [cms-UR106]*
[cms-UR106]
CYTOPLASMIC MALE STERILITY UR106 UR106F' cytoplasm
`UR106F' cytoplasm
'UR106F' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-UR27] [cms-UR27]*
[cms-UR27]
CYTOPLASMIC MALE STERILITY UR27 UR27F' cytoplasm
`UR27F' cytoplasm
'UR27F' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0020048 - microspore
PO:0009082 - spikelet floret
-
[CMS-UR89] [cms-UR89]*
[cms-UR89]
CYTOPLASMIC MALE STERILITY UR89 UR89F' cytoplasm
`UR89F' cytoplasm
'UR89F' cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
[CMS-WA] [cms-WA]
CYTOPLASMIC MALE STERILITY WA WA group cytoplasm
WA-group cytoplasm
Reproductive organ - Pollination, fertilization, fertility - Male sterility
GO:0007275 - multicellular organismal development
TO:0000232 - cytoplasmic male sterility (sensu Oryza)
PO:0009082 - spikelet floret
PO:0020048 - microspore
-
ACEF1 Ac ef1
Acef1
ACCELERATION OF HEADING EF 1 Acceleration of heading (ef1)
Acceleration of heading (fl21)
Reproductive organ - Heading date
GO:0003700 - transcription factor activity
TO:0000137 - days to heading
PO:0009049 - inflorescence
-
ACP3 Acp3
ACID PHOSPHATASE 3 Acid phosphatase3
Acid phosphatase 3
Acid phosphatase-3
Biochemical character
GO:0003993 - acid phosphatase activity
-
AE1 ae1
AMYLOSE EXTENDER 1 amylose extender1
amylose extender 1
amylose extender-1
Seed - Physiological traits - Storage substances
GO:0007275 - multicellular organismal development
GO:0000271 - polysaccharide biosynthetic process
TO:0000098 - glutinous endosperm
TO:0000487 - endosperm color
TO:0000196 - amylose content
TO:0000587 - endosperm quality
PO:0009089 - endosperm
-
AE2 ae2(t)
ae2
AMYLOSE EXTENDER 2 amylose extender2
amylose extender 2
amylose extender-2
Seed - Physiological traits - Storage substances
GO:0007275 - multicellular organismal development
GO:0000271 - polysaccharide biosynthetic process
TO:0000487 - endosperm color
TO:0000587 - endosperm quality
TO:0000098 - glutinous endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
AGR1 agr1*
agr1
AGRAVITROPISM 1 agravitropism1
agravitropism 1
agravitropism-1
Seed - Morphological traits - Embryo
GO:0009790 - embryonic development
GO:0007275 - multicellular organismal development
GO:0009630 - gravitropism
GO:0009653 - anatomical structure morphogenesis
TO:0000419 - leaf anatomy and morphology trait
TO:0000064 - embryo related trait
TO:0000043 - root anatomy and morphology trait
PO:0009009 - plant embryo
PO:0009025 - vascular leaf
PO:0009005 - root
-
AM Am(t)*
Am
HIGH AMYLOSE High amylose
Seed - Physiological traits - Storage substances
GO:0016051 - carbohydrate biosynthetic process
TO:0000098 - glutinous endosperm
TO:0000196 - amylose content
PO:0009089 - endosperm
-
ANA Ana*
AWN DEVELOPMENT A Awn development-a
Reproductive organ - Spikelet, flower, glume, awn
GO:0007275 - multicellular organismal development
TO:0000146 - seed length
TO:0000072 - awn length
PO:0006032 - lemma awn
PO:0009010 - seed
-
ANB Anb*
AWN DEVELOPMENT B Awn development-b
Reproductive organ - Spikelet, flower, glume, awn
GO:0007275 - multicellular organismal development
TO:0000072 - awn length
TO:0000146 - seed length
PO:0009009 - plant embryo
PO:0006032 - lemma awn
-
AO ao
ACCERELATED INTERNODE OVERGROWTH accerelated overgrowth of internode (Awa-odori)
accerelated overgrowth of internode
Vegetative organ - Culm
GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
TO:0000370 - leaf width
TO:0000145 - internode length
TO:0000135 - leaf length
TO:0000152 - panicle number
TO:0000089 - panicle type
PO:0020142 - stem internode
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
-
APD1 apd1
apd1*
APICAL DISPLACEMENT 1 apical displacement1
apical displacement 1
apical displacement-1
Seed - Morphological traits - Embryo
GO:0007275 - multicellular organismal development
GO:0009790 - embryonic development
GO:0009653 - anatomical structure morphogenesis
GO:0009826 - unidimensional cell growth
TO:0000064 - embryo related trait
TO:0000492 - leaf shape
TO:0000370 - leaf width
TO:0000040 - panicle length
TO:0000576 - stem length
PO:0009049 - inflorescence
PO:0009009 - plant embryo
PO:0009025 - vascular leaf
PO:0009047 - stem
-
AS as
ASYNAPSIS 1 asynapsis1
asynapsis 1
asynapsis
Reproductive organ - Pollination, fertilization, fertility - Meiosis
GO:0007129 - synapsis
-
BC6 Bc6*
Bc6
OsCesA9
CESA9
OsCESA9
OS_CESA09
OsCesA 9
CesA9
BC88
SDBC1
OsSDBC1
BRITTLE CULM 6 Brittle culm6
Brittle culm 6
Brittle culm-6
Cellulose synthase A catalytic subunit 9 [UDP-forming]
Cellulose synthase A catalytic subunit 9
semi-dominant brittle culm 1
9 Tolerance and resistance - Stress tolerance
Biochemical character
Vegetative organ - Culm
GO:0030244 - cellulose biosynthetic process
GO:0048573 - photoperiodism, flowering
GO:0008270 - zinc ion binding
GO:0016020 - membrane
GO:0009651 - response to salt stress
GO:0009808 - lignin metabolic process
GO:0016021 - integral to membrane
GO:0031225 - anchored to membrane
GO:0044403 - symbiosis, encompassing mutualism through parasitism
GO:0010410 - hemicellulose metabolic process
GO:0009642 - response to light intensity
GO:0009531 - secondary cell wall
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0009409 - response to cold
GO:0052324 - cell wall cellulose biosynthetic process
GO:0009834 - secondary cell wall biogenesis
GO:0005515 - protein binding
GO:0016760 - cellulose synthase (UDP-forming) activity
GO:0007047 - cell wall organization
GO:0009610 - response to symbiotic fungus
GO:0005886 - plasma membrane
GO:0006950 - response to stress
TO:0000333 - sugar content
TO:0000227 - root length
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000346 - tiller number
TO:0000460 - light intensity sensitivity
TO:0000011 - nitrogen sensitivity
TO:0000168 - abiotic stress trait
TO:0000108 - leaf shattering
TO:0000051 - stem strength
TO:0000303 - cold tolerance
TO:0000061 - node shattering
TO:0006001 - salt tolerance
TO:0000557 - secondary branch number
TO:0000608 - sodium content
TO:0006002 - proline content
TO:0000605 - hydrogen peroxide content
PO:0025025 - root system
PO:0009047 - stem
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
Os09g0422500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
LOC_Os09g25490.1
BD2 bd2
BEAKED LEMMA 2 beaked lemma2
beaked lemma 2
beaked lemma-2
Reproductive organ - Spikelet, flower, glume, awn
GO:0007275 - multicellular organismal development
TO:0000079 - lemma and palea anatomy and morphology trait
PO:0009037 - lemma
PO:0009038 - palea
-
BF Bf
BROWN FURROWS OF HULL Brown furrows of hull
Coloration - Others
GO:0043473 - pigmentation
TO:0000287 - brown rice shape
TO:0000264 - lemma and palea color
TO:0000056 - stem color
PO:0009047 - stem
PO:0009088 - seed coat
PO:0009039 - glume
-
BHA Bha(Bh1)
Bha
Bh1
BLACK HULL A Black hull-a
Black hull-1
Coloration - Others
GO:0043473 - pigmentation
TO:0000190 - seed coat color
TO:0000264 - lemma and palea color
PO:0009088 - seed coat
PO:0009039 - glume
-
BHB Bhb(Bh2)
Bhb
Bh2
BLACK HULL B Black hull-b
Black hull-2
Coloration - Others
GO:0043473 - pigmentation
TO:0000190 - seed coat color
TO:0000264 - lemma and palea color
PO:0009039 - glume
PO:0009088 - seed coat
-
BL5 bl5
BROWN LEAF SPOT 5 brown leaf spot5
brown leaf spot 5
brown leaf spot-5
Tolerance and resistance - Lesion mimic
GO:0015996 - chlorophyll catabolic process
TO:0000326 - leaf color
TO:0000069 - variegated leaf
TO:0000063 - mimic response
PO:0009025 - vascular leaf
-
BL6 bl6
BROWN LEAF SPOT 6 brown leaf spot6
brown leaf spot 6
brown leaf spot-6
Tolerance and resistance - Lesion mimic
GO:0015996 - chlorophyll catabolic process
TO:0000063 - mimic response
TO:0000069 - variegated leaf
TO:0000326 - leaf color
PO:0009025 - vascular leaf
-
BPH5 bph5
BROWN PLANTHOPPER RESISTANCE 5 brown planthopper resistance 5
brown planthopper resistance-5
Tolerance and resistance - Insect resistance
GO:0009625 - response to insect
TO:0000424 - brown planthopper resistance
PO:0009025 - vascular leaf
PO:0009006 - shoot system
-
BPH6 Bph6
OsBPH6
BROWN PLANTHOPPER RESISTANCE 6 brown planthopper resistance 6
Brown planthopper resistance-6
4 Tolerance and resistance - Insect resistance
GO:0080036 - regulation of cytokinin mediated signaling
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009863 - salicylic acid mediated signaling pathway
GO:0045921 - positive regulation of exocytosis
GO:0009736 - cytokinin mediated signaling
GO:0000145 - exocyst
GO:0009625 - response to insect
TO:0000205 - white-backed planthopper resistance
TO:0000424 - brown planthopper resistance
PO:0009006 - shoot system
PO:0009025 - vascular leaf
Os04g0431700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
LOC_Os04g35210.1
BPH7 bph7
BROWN PLANTHOPPER RESISTANCE 7 brown planthopper resistance 7
brown planthopper resistance-7
12 Tolerance and resistance - Insect resistance
GO:0009625 - response to insect
TO:0000424 - brown planthopper resistance
PO:0009006 - shoot system
PO:0009025 - vascular leaf
-
BPH8 bph8
BROWN PLANTHOPPER RESISTANCE 8 brown planthopper resistance 8
brown planthopper resistance-8
Tolerance and resistance - Insect resistance
GO:0009625 - response to insect
TO:0000424 - brown planthopper resistance
PO:0009025 - vascular leaf
PO:0009006 - shoot system
-
BPH9 Bph9
BPH9/26
Bph26(t)
BPH26
Bph18(t)
BPH18
BROWN PLANTHOPPER RESISTANCE 9 brown planthopper resistance 9
Brown planthopper resistance-9
BROWN PLANTHOPPER RESISTANCE 26
BROWN PLANTHOPPER RESISTANCE 18
12 Tolerance and resistance - Insect resistance
GO:0043531 - ADP binding
GO:0009863 - salicylic acid mediated signaling pathway
GO:0009625 - response to insect
GO:0009867 - jasmonic acid mediated signaling pathway
TO:0000172 - jasmonic acid sensitivity
TO:0000424 - brown planthopper resistance
PO:0009025 - vascular leaf
PO:0009006 - shoot system
Os12g0559400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
LOC_Os12g37280.1
LOC_Os12g37290.1
BSV Bsv(Bs)
Bs
Bsv
BLACK STREAKED DWARF RESISTANCE Black streaked dwarf resistance
Tolerance and resistance - Disease resistance
GO:0009615 - response to virus
TO:0000020 - black streak dwarf virus resistance
PO:0009025 - vascular leaf
PO:0009006 - shoot system
-
BZS bzs
bol
BENTAZON SUSCEPTIBILITY bentazon susceptibility
Tolerance and resistance - Stress tolerance
GO:0009635 - response to herbicide
TO:0000058 - herbicide sensitivity
PO:0009006 - shoot system
PO:0009025 - vascular leaf
-
CE Ce
Ce1
Ce2
CERCOSPORA RESISTANCE Cercospora resistance
Cercospora resistance-1
Cercospora resistance-2
Tolerance and resistance - Disease resistance
GO:0009620 - response to fungus
TO:0000422 - narrow brown leaf spot disease resistance
PO:0009025 - vascular leaf
-
CG cg*
cg
CIGER SHAPED PANICLE ciger shaped panicle
Reproductive organ - Inflorescence
GO:0007275 - multicellular organismal development
GO:0009826 - unidimensional cell growth
TO:0000089 - panicle type
TO:0000391 - seed size
TO:0000146 - seed length
TO:0000576 - stem length
PO:0009010 - seed
PO:0009047 - stem
PO:0009049 - inflorescence
-
CHS2 chs2(t)*
chs2
CHLOROSIS CAUSED BY LOW TEMPERATURE 2 chlorosis caused by low temperature2
chlorosis caused by low temperature 2
chlorosis caused by low temperature-2
Coloration - Chlorophyll
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
GO:0015995 - chlorophyll biosynthetic process
TO:0000495 - chlorophyll content
TO:0000432 - temperature response trait
TO:0000299 - leaf lamina color
PO:0009025 - vascular leaf
-
CHS3 chs3(t)*
chs3
CHLOROSIS CAUSED BY LOW TEMPERATURE 3 chlorosis caused by low temperature3
chlorosis caused by low temperature 3
chlorosis caused by low temperature-3
Coloration - Chlorophyll
GO:0015994 - chlorophyll metabolic process
GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000432 - temperature response trait
PO:0009025 - vascular leaf
-
CHS4 chs4(t)*
chs4
CHLOROSIS CAUSED BY LOW TEMPERATURE 4 chlorosis caused by low temperature4
chlorosis caused by low temperature 4
chlorosis caused by low temperature-4
Coloration - Chlorophyll
GO:0015994 - chlorophyll metabolic process
GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
TO:0000299 - leaf lamina color
TO:0000432 - temperature response trait
TO:0000495 - chlorophyll content
PO:0009025 - vascular leaf
-
CHT4 Cht4(t)*(Chi4)
Chi4
Cht4
OsChia2b
Chi-4
CHIT2
OsCHIT2
PR3
OsPR3
CHITINASE 4 Chitinase4
Chitinase IIb
Chitinase 4
Pathogenesis related (PR)-3 chitinase 4
Chitinase-4
PR-3 CLASS IV CHITINASE
Chitinase-4(novel type)
4 Tolerance and resistance - Disease resistance
Biochemical character
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0004568 - chitinase activity
GO:0006952 - defense response
GO:0006032 - chitin catabolic process
GO:0009617 - response to bacterium
GO:0042742 - defense response to bacterium
GO:0009738 - abscisic acid mediated signaling
GO:0016998 - cell wall macromolecule catabolic process
GO:0051707 - response to other organism
GO:0008061 - chitin binding
TO:0000175 - bacterial blight disease resistance
Os04g0493400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 )
LOC_Os04g41620.1
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/rice/oryzabase