cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK287906     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0181900 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 4567627 -  4573046  ( - );   5420(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4567627 -  4568144 ( - );   518 (bp)
Exon 2 Location 4568280 -  4569209 ( - );   930 (bp)
Exon 3 Location 4569301 -  4569566 ( - );   266 (bp)
Exon 4 Location 4569662 -  4569970 ( - );   309 (bp)
Exon 5 Location 4570497 -  4570647 ( - );   151 (bp)
Exon 6 Location 4570958 -  4571012 ( - );   55 (bp)
Exon 7 Location 4571137 -  4571332 ( - );   196 (bp)
Exon 8 Location 4571560 -  4571797 ( - );   238 (bp)
Exon 9 Location 4571878 -  4572096 ( - );   219 (bp)
Exon 10 Location 4572629 -  4573046 ( - );   418 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
MSU ID cDNA
Accession No
Os02g0181900 Os02t0181900-01 J065212D20 303540 J065212D20 LOC_Os02g08490.1 AK287906


Chromosome: 2 ,  position: 4,567,627 - 4,573,046 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ccccttctcc aagcatcgcc acccttcgcc gccgccgccc taaaatcgcc gcgagagcgc 
000061 gcgcgcttct cccacccggc gaccctgaga gtccgaggcg ccattgaacc cctgaccccc 
000121 ccacccgctc gccacgatgt cacgcgccac cgccgtgtcc aggctcgcgc gcgccgcccg 
000181 cgccgcggcg gcggcgcggc gccaccacgc tggcggccgg gacccgctcc gcgccctcgc 
000241 gtcgctcgct ggagacgctt ccgcttccgc tggtggtggg gcgaggaggc ccgcgtggtt 
000301 cgcgccgccc atgggccggc tcggtggagg cgggctgctg gttccgccgc cgccgccgca 
000361 gcggaggctg ttccacccca cgcaggcggc gaggtacagc acctcgtcgt cgtctcaggt 
000421 ctgggttcgc ttctctacgc ccgtgcaatt atttttctct tgtcagttgg ttgctatagt 
000481 ggtggtgaat tcaatctcgc ggatgctgta catgtgtcgg caatgaggct attgtgaatg 
000541 aaactgttag tttagttgcg aatttgcgat acatgtttga taatctactg cattaattgg 
000601 atactacggt ttacatgtgt aatgttctgc tatgctcagt gatcatgttg cagtgcatat 
000661 gcaaaagtgt ttagtttcag gcaatttagg atgtgcaatg tgtcagtgtt taacaatttc 
000721 atgcctagaa aaccttgaag gaaagcagtt gctgatcatt ctataggttt ggtgaaaact 
000781 gagaacagct atgtatcaga tttgataaaa cttggtgatt actatgaaaa ctgagaacat 
000841 atggtttgca gtttgtggat atatagtcat atatagacaa tatgggaaag ttccctcttg 
000901 ccaacaacag ctgactaata gatgggtaat ttttttcggc gaccaaacag ataactccag 
000961 gagaatttac tgagatggcc tgggaggggg ttgtcggcgc ggttgatgca gctagaatgt 
001021 cgaagcaaca agtagtggaa gcagagcacc tgatgaaagc tcttctggag cagaaggatg 
001081 gtttagcgcg cagaatattt tcgaaagctg gaatagataa cacatctgtc ctgcaagcta 
001141 ctgatgagtt catctcgaga cagccaaagg tagtgctgat tggccgtagt agttaattcg 
001201 ttaagagata tatgcatcaa tgttaacaat gagtctgctg catttgtagg ttgttggcga 
001261 tacaagtgga ccgatcattg ggtcaagctt tgtatcaatt ttggataatg caaggaagca 
001321 taagaaagaa tatgctgatg agtttgtatc tgttgagcac atattgcgag cattcacaga 
001381 agataagagg tttggacaac agctgttcag agatctcaaa attggggaga atgagttgaa 
001441 ggaagctatc tccgctgtac gtggcagtca gcgggtcaca gatcagagta tgtctatgta 
001501 acttcatcct ttattgttac tttcttttgt gcagttgttt ttctacagag gtatctcttt 
001561 gttcagctct ctattcacaa cttgagggga gactctgcca atggcaatgg ttttgtttca 
001621 gccagatggt ttttcatgtt agcattaaaa tgtacccagt gtgactgttt gataacctta 
001681 ggaatcataa ctctttttat ggtgctgctt ccagatccgg aggggaagta ccaggctcta 
001741 gagaagtatg gtattgacat gacagaatta gctcgacgtg gaaaactgga tcctgttatt 
001801 ggccgtgatg atgaagtgcg acgatgcatt cagatccttt gcaggagaac taagaataat 
001861 cctgtaatta ttggtgagcc aggagtcggc aaaactgcta tcgctgaagg gtaaaatcta 
001921 tctctatctc tatctctctc tctctctctc tcaatacaag ttacttttta cagcttacag 
001981 catttgtcat tttaaggatg tgctgagcaa ttcgtctgca tttatttcgt gcagattggc 
002041 acagcgtatt gtgcggggag atgttcctga acctttacag aatagaaagg taatttctta 
002101 gccttttttg cttgtcctta tcataacatt ttctaggata gtagccttgc ttttatttca 
002161 tactcagatt caatcaacca gatgagctga ggatagatat accatgagat ctttccatga 
002221 gtagtggcaa ttcatctacc tctcgtcagg tggatccatt aagaggaata cttctggcca 
002281 ataggacaat gcattctcag ttcgttaatg caatgagaaa ataaaggaag aagaaataga 
002341 tagtaattta ttgtgctatc cattcttatt ttgttacatg catatgcaaa aaattacagc 
002401 ttatttcatt ggacatggga gcattacttg ctggggctaa attccaaggt caatttgaag 
002461 agagacttaa ggctgttctg aaggagatca ctgcctcgaa tgggcagatc atcttgttca 
002521 ttgatgagat ccacactatt gttggtgcag gtttgtatat ctgtgtattt ggccattgcc 
002581 atgtttgttt agcacttagc ttttattaac ctctgaattg tccattaggt gtcacatgtt 
002641 tagcttaact aaatttgata cctgaatgat tcaaattaag catacatatt catatggtgg 
002701 aagatagtag tctgactttt agattggtag tcactagtgc ttgtatttag acaattatct 
002761 catttatttg ttttattatg ttactttgaa gctgtcatta actattttgc ccaaaatgtg 
002821 cactagtggc aaattggctg aatgattcaa attaagcata catacatact catgtggtgg 
002881 aagatactgt ctgactttta gattggtagt cactagtgct tctatttaga caattatctc 
002941 attttatttg tcttattatg ctactttgaa gctgtcatta actattttgc ccaatatctg 
003001 cacttgtggc aaattggtcg ggcctttctt actatgacta ttgttgtgct tacaccttac 
003061 ctttttcctg ctccaggagc agcaggtggg gcaatggatg ctggtaattt gctgaagcca 
003121 atgttaggtc ggggtgaact ccgttgcatt ggagcaacaa cactagatga gtacaggaag 
003181 tacattgaga aggatgctgc tctggagcgt aggttccagc aggtttattg tggtgagcca 
003241 gcagttgagg atacaatctc tatactgcgt ggcctaagag agcggtatga actgcaccat 
003301 ggtgtcaaaa tatcagatgg agctcttgtt tctgcggctg ttttatcaga tcgctacatc 
003361 actggacgtt ttttgcctga taaaggtact gcatgttctt tattatcaac aattatggga 
003421 gcttaaattt aatccttcta cagtttttct tgatctaaat ttcttccacg tcatgggcag 
003481 ctattgacct agttgatgaa gcagctgcta agctgaaaat ggagataaca tcgaaaccta 
003541 ttgaattgga tgaggtagat agggaaatca taaggcttga aatggagaag ctctcattga 
003601 agaatgatac cgataaagcc tccaaacagc gactgagcaa gcttgaagct gatctagaat 
003661 ctctgaagca gaagcagaaa aacctttcag aacattggga atatgagaag tccttgatga 
003721 ctcgcataag atcgatcaag gaagaggtag gctcatggtt tgttctttta attgttattt 
003781 gttgtgccat ggcacgtaat atagtctcta actcatattt tcttatcttt gttgtagact 
003841 gacagagtta acctggagat tgaagctgct gagagagagt atgatttgaa ccgtgcagct 
003901 gagctcaagt acggaacact tctgtcgcta caaaaacagc ttgaagaggc tgagaacaaa 
003961 ctcatggaat tccagcagtc aggcaagtca atgcttcgag aagaggtgac tgatgttgac 
004021 attgctgaga ttgttagcaa gtggactggt attccagtgt caaaccttca acaatctgaa 
004081 aaggaaaagc tactgctatt ggaagatgta ctccacaaga gggttattgg ccaagatatt 
004141 gcagtgaagt cagtggctaa tgcaatccgt cgttctaggg caggcctatc agaccctaac 
004201 cgtcccatag caagcttaat gtttatgggt ccaacaggtg taggaaagac cgaactgggg 
004261 aaaacactag ctgaattcct tttcaacaca gagaatgctc taatacggat tgatatgagc 
004321 gagtacatgg aaaagcatgc cgtctcccgt ttggttggag cccctcctgg ctatattggt 
004381 tatggggaag ggggccaact gacagaagct gttcgtcgta ggccttattc tgtggttctt 
004441 ttcgatgaaa ttgagaaagc gcaccaggat gtgttcaaca tcttattgca acttttggat 
004501 gatggaagaa taaccgactc tcagggcaga acagtcagct ttactaactg tgttatcatc 
004561 atgacttcaa acattgggtc gccattgatt cttgatacgc ttagaaacac atcagacagc 
004621 aaggaggcag tttatgaaat aatgaagaag caagtgattg acatggctcg gcagtcattc 
004681 cggccagagt ttttgaatag gatagatgag tacattgtat tccagccgct ggacaccaca 
004741 gagataaatc gcatcgtgga gatccaggta aacctcttat agttattctt acatgactac 
004801 tctaatagac ccacctgtgc catagcatca aatattaatt gtgctttaga ggttttctca 
004861 cagttgatct aacaaaaaaa ttgtaaaata ttccacttgc agctgaaccg agtcaagaac 
004921 cggctgaggc aacagaagat tcatctgcag tacacaccag aagctgtgga gcatcttggc 
004981 tctctcggct ttgaccctaa ctacggtgct aggcctgtga agagggtgat ccagcagatg 
005041 gtagagaacg agatcgccct cagtgtcctg aagggcgact tcaaagaaga cgacaccgtc 
005101 ctcgtcgacg tgagctccgt ggcgatcgcg aaaggccttg ctccacagaa gaagcttgtc 
005161 ctccagaggt tagagaatgc aaacttagag ttagtcgcca atgactagtt agttacacga 
005221 tggcatcgcc aaatcctgta ccaggtttga ggttccccct cgtagtagat gttttcagca 
005281 gctgcaggag ctgctagttc ggcatgttcc cacttctgag ctttcatatg gctttctata 
005341 gaaagtctgt ccagttgaaa agaatgtaac ttgcaaagga tgttagttaa actgttctgt 
005401 aaatattagt ttctcttggc 

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BJ465354 bags39h19 668
more... (Total Hit Count: 12 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ676715 whms5p07 690
more... (Total Hit Count: 5 )
/rice/oryzabase