cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK242984     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0139400 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 2106368 -  2110510  ( + ) ;   4143(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2106368 -  2106619 ( + ) ;   252 (bp)
Exon 2 Location 2106942 -  2107658 ( + ) ;   717 (bp)
Exon 3 Location 2107792 -  2108636 ( + ) ;   845 (bp)
Exon 4 Location 2109938 -  2110510 ( + ) ;   573 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
MSU ID cDNA
Accession No
UniProt
Accession No
UniProt Entry
Name
Os02g0139400 Os02t0139400-01 302345 J090094N03 LOC_Os02g04680.1 AK242984 A3A2Z8 SPL3_ORYSJ
Os02g0139400 Os02t0139400-01 302345 J090094N03 LOC_Os02g04680.2 AK242984 A3A2Z8 SPL3_ORYSJ


Chromosome: 2 ,  position: 2,106,368 - 2,110,510 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gaaggcagtg gtgtggccaa gcttgaatgc tccagtgagg ctgcttctct ggctgccaag 
000061 ctgatggacg cgccgccatc gccagatcgg ctcgccggat cagtggagct ccatgcttct 
000121 ccaggctgct gctgattgag agagagagag agagagagag agagagagag agagaaacag 
000181 tttttttttt tcaggaggaa ttcatcagga atctgctgtg ctccttttct ctgggagaga 
000241 agcaaagagc aggtacttca ctaccccctc cccccactgt tgaggtagtt gtgctttgcc 
000301 tttcttgcat ctgaaatgat gatgttgctg ttcttgccat gattgatgat tcccctgata 
000361 aagctaagct agagtctgca tatatgggca ttcattgata ctcttggtag cacatcttgt 
000421 ggtggttgta cttctctctc aaacttcaat gatgcacagt tgagtcaagt gtcagctatg 
000481 ccataaatct gtcctgattt ctgcaacttc taattgagtt atattttctt tttgagtatc 
000541 tgtccttctc atatttcatt ttgttgattt aaaggttgga gcagcagcag ctgggatctg 
000601 taactggcat gggttctttt gggatggact ggaatcagaa gagctcggtg ttgtgggatt 
000661 gggagaatat gccgccgata ggaaatagcg cgaacgagaa tcccaagaat gtgatgctgg 
000721 ctgaatcaaa acttgcaggt gttggggttg acataggcca tgaatcaggc cattcttctg 
000781 gtggtacttt ctcttctagc tcagagattg ggtatggttc atccaagagt tccatatccg 
000841 cgtcgatcga ttctccgtcc aaagtgggga acaccataga gctcaatttt gcatctgcgg 
000901 aagagcatga taagaacatg gacaagggta agagtaaagt tgatgacacc ggaacttctc 
000961 gatcaccggt ggtagcagcc aatcgtgtag agcccttgat tggcctgaag cttggcaaga 
001021 gaacctattt tgaagatgtc tgtggagggc agaatgtcaa gagttctcca tctggtgtga 
001081 gtgtggctac cccatctcct ggtctggcca agaaggtgaa ggtggctcag cagaacactc 
001141 agaacccaca ctgtcaagtt gaaggctgca atgttgatct ctcttctgct aaaccttacc 
001201 atcgaaagca ccgagtctgt gaacctcaca gcaagactct taaagtcatc gttgcgggtc 
001261 ttgagcgacg cttttgccaa cagtgtagtc ggtgagattt tcttcttggt tactaaatat 
001321 gttgtctgct tgttatcttg aatccgatct tagcaccctt gattaaggta aagtaaaatt 
001381 gttcttgttt cattcttttc tttgaacttc tgctgttttt gtaggtttca cggtttagct 
001441 gagttcgacc agaaaaaacg aagctgtcgc aggcgcctcc atgatcacaa tgcccgcaga 
001501 cggaagccac aaccagaagc aatttcctta agttcgtcga ggctctctac attactctat 
001561 ggtggtatta agattctatt tgcattatag ttctgtgaaa ttgaagctta ttttgtcatc 
001621 tacccagttt aaatctcacc cccccccccc caataccata aatattgtca ccgaactgat 
001681 cggtactaaa acatgggaag tttcaactgt gccatctctt tgtattgtta tttctgcaca 
001741 taatacttca gaaagaaaaa tcactctgaa aaattaacga attggagcac agaagttgtt 
001801 gagtatctga gtaagcatta actaaaattt caagaagtgc acattgaatt tagtgtaccc 
001861 gtaagttgta caaaagtggc tttaacttcc ataataggca atagtacaat agtaataagc 
001921 aacctatttc ttctcgttag tcgttacatc tgtttagctt agcgctgaaa ttgttgtgac 
001981 ttgtgaccgt cctaagcaga tgcaaggcaa caggcaagtt ttctatttgg tcaagctcct 
002041 tatggtcaga tgggaagctg tgcaagttct tgggataacc cagtaccagg aggcttcaaa 
002101 tttacagcaa caaaagctcc ttggtcaagg ccaacaatag ctgccggtgt tgatgggacg 
002161 catgtatcta atcagcaggc atcgggcaat gtactgccac atggagcaca tcatagtttt 
002221 gatggtctca tggcgttcaa agaaaccaac gcgaaggtcc ttaaccaagg tattttgttt 
002281 ctctagctat ttatagatga actttccaaa agaaaaaggt gagaggttaa cattctgaaa 
002341 gcaaaagatg agaaaataat aataatgttg ggtctttcac ccgcataaaa attgttctca 
002401 caactcctta tgaggaaaaa gagcatagac ggatgcgcct atgtagtcct agaagctatt 
002461 ttatatgatg gtgcctcttg ggatgcttct tcttgattct agctgatcat tggtgtttct 
002521 gtgaagttat tagatggtat ggaactctat gcacttagga cgtatggtcg tatcatttca 
002581 ttagataagt ttttcccatg actacatgtc tggttattta tttttacaac acgagaacct 
002641 gattgttggg ctacgttctt ctccatgttc ttttctttgc tactgacttc tgattaaact 
002701 catcctttgt ctacatcagc ttctttttct taccaaagat tgatccagct ttatataaaa 
002761 gccggagaaa agtcttacag acattacaga ctaagactga aagaaaacta cattagcttc 
002821 ttgcttgatt ttaaaagtac tattgcattg tgccgcagca agtgtccaca taccacaatc 
002881 tttcccatga aactcatcct ttttagcaga gctgtcacca tcctccagtt gctgacacct 
002941 taacattgag tcagctcaca ataatgtagg cacaaagcta caacatgtga aacaaatttc 
003001 cggaccccac tccttgcaat ctaggacagc ttgtagtgac gtgtgtaagg tgagtggtat 
003061 atatcgatat catagattgg tttgaagctc tgttatgttc tgtgaagtag actgcaatca 
003121 ctgaaaacct ttgcgttttc gcatgttatt ggagcttcat ttgtggccgg taaccaccca 
003181 cctttggtgt ttcttcattt ggcccaactc ttgtacaatg actagcacca gaatgtcctg 
003241 atcaagcatg attctgcttc aacagcttag ttgagtgtaa taatgtgcat gcaggaaagc 
003301 tttaagcttt tgaccaaaat ggagggagtc gcaatctgtt ggataatcta atcatcatta 
003361 cttctagtag gaccaagatc ctctacatgg aaaacctggg ctcatatata ctactagaag 
003421 agaggaatta tcttcactga gatttttgtt gcaatctgtt catagttacc atgatatata 
003481 tgacttcaat tccagctgca tctgctcata cgatcttttt tcggttattt atccgcataa 
003541 aacttacagt tctactcact aatttttcag gcatggaagc ttctgctgtc gcttccggct 
003601 ccgctagagg cccagacttt gagcatgctc tctctcttct gtcaatcgat tcagtgggtg 
003661 ctgcaaacct tcagccaggt tctcagattc accctggtgt caccgccatt gccggcacct 
003721 ccaaccctgt catgatgcca tctccagcaa tctggcaagg aggcttgtcc cttgatcagc 
003781 aggcgcagtt tcaggctttc gaccgccttg gcaacgacga cgacgaagat catctccagc 
003841 tcccaaagcc ttcctatgac aactcccact atgatcagat gaactgacga tgtttcagat 
003901 gtcgcgcaat cgacatggct tctgctctta tctgaaattt ctgaaatctg gaactgcatt 
003961 cttggtgttc tgaagaataa aggtgtgcga gaaacttgaa cttgaattga tctggttgtg 
004021 ttgtactctg gttgtagcgc tgccatgaaa cataaactta acttttgctt tcctttagtc 
004081 gctgtcacta atcgtgtgct tgaataattt cattctggtg atactttgta tcagaattgc 
004141 ttc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ245444 whf19j24 614
more... (Total Hit Count: 3 )
/rice/oryzabase