更新情報cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK105011 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os02g0187800 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 2 |
| RAP - Location, Length | 4870165 - 4874035 ( - ); 3871(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 4870165 - 4870975 ( - ); 811 (bp) |
| Exon 2 | Location | 4872018 - 4872245 ( - ); 228 (bp) |
| Exon 3 | Location | 4872874 - 4872987 ( - ); 114 (bp) |
| Exon 4 | Location | 4873813 - 4874035 ( - ); 223 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXpro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os02g0187800 | Os02t0187800-01 | 107859 | 001007H09 | 6830 | LOC_Os02g09490.1 | AK105011 | 15991 | Q6ZHS4 | CADH2_ORYSJ |
Chromosome: 2 , position: 4,870,165 - 4,874,035 bp |
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| Sequence (Data source : RAP-DB) | |
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Nucleotide
Fasta Format |
000001 agaattcagc gagagagagc gaatcagcca ctgcacttct tgttcttgtt ctcttcctcc 000061 tcccgaatcc gatccatcca ttggccgccg ccgccgccgc cgcctcgtgc gtcgcgtgtt 000121 cgtgtccaga gacgatgggc agcctcgccg ccgagaagac cgtcaccggg tgggccgcca 000181 gggacgcctc cggccacctc accccctaca actacaccct caggtatgat atgatatgat 000241 cgatcaccct ctccttctcg atcttgttct tgcaagtttt gcttaaggtc ggtagaaacg 000301 gagggattag gttttagttt ctcttttgtc tcaattctga aactctggta catgcgttct 000361 actacagttt agttgttcag atggttcgtt tctgaatttc tgaaaactga tggcgttcca 000421 gtgctttagt tgtttagatg cccccgtgtt ttaatttgtt tgtgttcatg tcatctgcct 000481 cgagtacaac tcagattgtt tctgcctctt ggccaaagtg tgaagaggtg aagagagcaa 000541 ttggatttct tttttctttt ttgggctcct ccattcgatc cattccacac ttcccacgtg 000601 agtttgactc tattttgtat tcctgctcct ctcctagtat aagtccaaca tgaagagtat 000661 agtggtgtag tactagtgta ctaccaaaac tgcttcacct accgccaatt ggctattgca 000721 atcatcgtca cgtcttggtt ttgttgggtg aaaggaacag aatccctgaa tccggagcag 000781 ttgtggcaaa cagacagaat gcatggagtt ctttttggct agttgcctgg ctccacatat 000841 atatattttc agaagcattc tttataattt tctaatatat atatttgcta tgcaattctc 000901 gtgccatgcc tccttaaaga aaaggaggat tatatatata tcaataattt ccttgagttg 000961 tcttcttgta gaatggaata actgaagaag catcttatgc aacagatcaa ctaatgttct 001021 ttttttttcc tgtatgtggt ggtaccagga agactgggcc tgaagatgtg gtggtgaagg 001081 ttttgtattg tggtatctgc catactgaca tccaccaggc caagaaccac cttggtgctt 001141 ccaagtaccc catggtccct gggtaagatt attcacagtt atctagatgg atcatggctc 001201 atgtcaatgg agatcttcta ctagcaattg atttgatggt gtattctata gtagactgaa 001261 gataaactta ttaactgatt gggataacaa acatatcaga aaagagtagg cactagtaac 001321 tagcaaatct ggtcagtgct tttttcagat ttacaaaagg catagatgca catgcaccac 001381 tatatcacac tcctttggaa cagaaagata agttagtgca tcgcttttag catttttctt 001441 ttttgatcaa cacctttcat gacaggtata gtacagatta gatgcaccat cagtttcaga 001501 gacacgtgta aagaaaacct cagcgagaac cttccctgat ctgatgggct ttaaataagc 001561 acacgataga tccccaacac caggctgaaa aatgatgcct aattagtagt aatttagtac 001621 tactacacca tctgcatgtc gtactaagta tgcaacaata attggttgga ttaattagtt 001681 ggtgaccaag aattcctttt tccagtacac ttccattgtc gtaccaatat tcagtcatgt 001741 gttggatttt gtcggtgacc aagaaaattc tctcctcttc tcgtctgcag ccatgaggtg 001801 gtcggcgagg tggtggaggt cgggccggag gtgaccaagt acagcgccgg cgacgtcgtc 001861 ggcgtcggcg tcatcgtcgg ctgctgccgc gagtgccatc cgtgcaaggc caatgtggag 001921 cagtactgca acaagaggat ttggtcctac aacgacgtct acaccgacgg ccggccaacc 001981 cagggcggct tcgcctccgc catggtcgtc gaccagaagt gagtgctaaa cacagcttta 002041 ctccaacaag taatcaccaa ccaactgatc acgatatcat tatcatatta tcatattgtc 002101 agtgttctag gtagagaaaa ctagactgga cttttccgaa catccaaagt aaagtccagt 002161 ctgttagaaa attttgtgga gaaaatgtca tctgagactg aaagagatgt cgagaagtcg 002221 gtactgtgtt gagtgtaaag tgagaagtca ccaaagttag gtataaagtg ttgattaact 002281 gataagtcct cacctacccc ggtccattag tccatttgtt gttggaagaa ttgcttcttg 002341 aacagagcaa aagttggatt gttgcatagc gtcgttgtag tcagttggta aactagcaga 002401 gacagtgaaa tgttgggctc attttgtttg gtgcgctacc aaatcattgg tagcgtcaaa 002461 tcatggtcaa gatttggcac taccaatatt ttagtatagt tggtttataa gagcaagttc 002521 aatagtaaag ttaactgccg gctccaaaat tcaccacatt atttaagaga taactaaaca 002581 atggtagata cagtaattgg ctacacccat gctttaacca aggcatcctg tcaggtgttg 002641 gtaacttctg catgttcaag ttctaatttt cgattggttg tcccgagctg cagggggcca 002701 gagcgcctag gcgctcgtgc ttgagccggt gactggattg tcgtccgctt tgctctctct 002761 gctttccctc tctctatcat atatgttaaa atattaggta agcaggctat tagcctgcta 002821 ttgtacctgc tctaagagtt gtattacctt tggtaaattt tgacatcatt acaaacatat 002881 acatggtact atttaaagtg ccaactattt gatagggcaa attctggcat caaaccaaaa 002941 catcccgtga tttttgatcc acctgcctaa tctgaaagtt gtcacgtctt aaaaagatta 003001 aaatatttgg ttagtgagat ggtaagaaac tagtaaaaaa agtaatgaat ttgtgtgcag 003061 gtttgtggtg aagatcccgg cggggctagc gccggagcag gcggcgccgc tgctgtgcgc 003121 cgggctgacg gtgtacagcc cactgaagca cttcgggctg atgtcgccag gtctccgcgg 003181 cggcgtcctg gggctcggcg gcgtggggca catgggcgtg aaggtggcca agtcgatggg 003241 gcaccacgtg acggtgatca gctcgtcggc gaggaagcgc ggcgaggcca tggacgacct 003301 gggcgccgac gcctacctcg tcagctccga cgcggcggcg atggcggccg ccggcgactc 003361 gctggactac atcatcgaca ccgtgccggt gcaccacccg ctggagccgt acctggcgct 003421 gctgaagctg gacgggaagc tgatcctgat gggggtgatc aaccagccgc tgagcttcat 003481 ctcgcccatg gtgatgctcg gccggaaggc catcaccggc agcttcatcg ggagcatggc 003541 cgagacggag gaggtgctca acttctgcgt cgacaagggg ctcacctccc agatcgaggt 003601 cgtcaagatg gactacgtca accaggccct cgagcgcctc gagcgcaacg acgtccgcta 003661 ccgcttcgtc gtcgacgtcg ccggcagcaa catcgacgac gccgacgcgc cgcccgcctg 003721 atcgccgccg tgcaccctca tggcagcatc cgtatgatcc gttcttgaac ttgtttgtgt 003781 gagactctga cgacttgtcc atgtaacgtc cgtgtgcctt tccggtataa attcggcctc 003841 gcaatatatg gaccattttg catttccgat c |
相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AK248843 | FLbaf3i06 | 1417 |
| more... (Total Hit Count: 36 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ914350 | whthkles29i22 | 693 |
| more... (Total Hit Count: 41 ) | ||
