cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101744     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0765600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 33104326 -  33106171  ( - );   1846(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33104326 -  33104802 ( - );   477 (bp)
Exon 2 Location 33104887 -  33105698 ( - );   812 (bp)
Exon 3 Location 33105793 -  33105925 ( - );   133 (bp)
Exon 4 Location 33106034 -  33106171 ( - );   138 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0765600 Os02t0765600-01 J033061O03 212589 J033061O03 2073 LOC_Os02g52710.1 AK101744 2093 AP008208.2 255670529 BAF10134.1 113537751 NC_008395.2 297600179 NM_001054755.1 115448880 NP_001048220.1 115448881 P17654 AMY1_ORYSJ


Chromosome: 2 ,  position: 33,104,326 - 33,106,171 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aatcatccat ctccgaagtg tgtctgcagc atgcaggtgc tgaacaccat ggtgaacaaa 
000061 cacttcttgt ccctttcggt cctcatcgtc ctccttggcc tctcctccaa cttgacagcc 
000121 gggcaagtcc tgtttcaggt aagagatcgc catgagttgg gtttcaggct tcagtgaact 
000181 gatcgggttt tgtactgagc ctaagagaat gatgcagtga tgctcttgtg tttgatgatg 
000241 atgcagggat tcaactggga gtcgtggaag gagaatggcg ggtggtacaa cttcctgatg 
000301 ggcaaggtgg acgacatcgc cgcagccggc atcacccacg tctggctccc tccgccgtct 
000361 cactctgtcg gcgagcaagg tgcggtgctc tgctctctcg atcccctccg tcgtcgcacc 
000421 attgccggca aaatacatgc acaggtcgtt gaattgcttg aatgcttctg caggctacat 
000481 gcctgggcgg ctgtacgatc tggacgcgtc taagtacggc aacgaggcgc agctcaagtc 
000541 gctgatcgag gcgttccatg gcaagggcgt ccaggtgatc gccgacatcg tcatcaacca 
000601 ccgcacggcg gagcacaagg acggccgcgg catctactgc ctcttcgagg gcgggacgcc 
000661 cgactcccgc ctcgactggg gcccgcacat gatctgccgc gacgacccct acggcgatgg 
000721 caccggcaac ccggacaccg gcgccgactt cgccgccgcg ccggacatcg accacctcaa 
000781 caagcgcgtc cagcgggagc tcattggctg gctcgactgg ctcaagatgg acatcggctt 
000841 cgacgcgtgg cgcctcgact tcgccaaggg ctactccgcc gacatggcaa agatctacat 
000901 cgacgccacc gagccgagct tcgccgtggc cgagatatgg acgtccatgg cgaacggcgg 
000961 ggacggcaag ccgaactacg accagaacgc gcaccggcag gagctggtca actgggtcga 
001021 tcgtgtcggc ggcgccaaca gcaacgccac ggcgttcgac ttcaccacca agggcatcct 
001081 caacgtcgcc gtggagggcg agctgtggcg cctccgcggc gaggacggca aggcgcccgg 
001141 catgatcggg tggtggccgg ccaaggcgac gaccttcgtc gacaaccacg acaccggctc 
001201 gacgcagcac ctgtggccgt tcccctccga caaggtcatg cagggctacg catacatcct 
001261 cacccacccc ggcaacccat gcatcgtgag tagccaactc gatcagaaat tctgaatcat 
001321 cctgcaaact gatcgatgaa ctgatgataa attctgtaaa attgttcagt tctacgacca 
001381 tttcttcgat tggggtctca aggaggagat cgagcgcctg gtgtcaatca gaaaccggca 
001441 ggggatccac ccggcgagcg agctgcgcat catggaagct gacagcgatc tctacctcgc 
001501 ggagatcgat ggcaaggtga tcacaaagat tggaccaaga tacgacgtcg aacacctcat 
001561 ccccgaaggc ttccaggtcg tcgcgcacgg tgatggctac gcaatctggg agaaaatctg 
001621 agcgcacgat gacgagactc tcagtttagc agatttaacc tgcgattttt accctgaccg 
001681 gtatacgtat atacgtgccg gcaacgagct gtatccgatc cgaattacgg atgcaattgt 
001741 ccacgaagta cttcctccgt aaataaagtg aggatcaggg acatacattt gtatggtttt 
001801 acgaataatg ctatgcaata aaatttgcac tgcttaatgc ttatgc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AK249762 FLbaf51n06 1174
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ901102 whthkles24j05 689
more... (Total Hit Count: 18 )
/rice/oryzabase