cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK099697     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0791800 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 34485635 -  34489611  ( - );   3977(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 34485635 -  34486038 ( - );   404 (bp)
Exon 2 Location 34486144 -  34486203 ( - );   60 (bp)
Exon 3 Location 34486280 -  34486390 ( - );   111 (bp)
Exon 4 Location 34486466 -  34486611 ( - );   146 (bp)
Exon 5 Location 34486692 -  34486811 ( - );   120 (bp)
Exon 6 Location 34487203 -  34487315 ( - );   113 (bp)
Exon 7 Location 34487442 -  34487533 ( - );   92 (bp)
Exon 8 Location 34487716 -  34487825 ( - );   110 (bp)
Exon 9 Location 34487948 -  34488021 ( - );   74 (bp)
Exon 10 Location 34488381 -  34488454 ( - );   74 (bp)
Exon 11 Location 34488595 -  34489611 ( - );   1017 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0791800 Os02t0791800-01 J013074J03 210533 J013074J03 1607 LOC_Os02g54910.1 AK099697 16830 AP008208.2 255670529 BAF10275.1 113537892 NC_008395.2 297600179 NM_001054896.1 115449162 NP_001048361.1 115449163


Chromosome: 2 ,  position: 34,485,635 - 34,489,611 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtgcagcgct cctctgctcc acgcgccacc cgccaccgct ccgcccaccg cccgccgtcg 
000061 ctccgtcaac agcccaccac ccgtcacccc ctctgtgctg ccgccgctcg ccttcttgta 
000121 gtatagaggg gagagagagg aggaaggctg acaggtggga ccaaataggc cacacctttt 
000181 ttaattattt tttttagctg acatatgggt cccatgattt ttactatttt ttcggataaa 
000241 attgtcacga aagcgccacg tcaatgccac gtaatcgcca cgtcagtgcc acgtgggtcg 
000301 aagacctagt caaaggagcc acgtaggcgc cacgtcggcc aaaaccgccc tccatactgc 
000361 cgagggacat tgtttgcccg gttttcgtaa gttgggggac gagtcatacc cggttttgcg 
000421 gtcaagggac gaaaatcaaa ctgaccgaca aatagaggga cctaaagtga acttattcct 
000481 ttttataact agcatgtggg cccatagttt ttattatttt ccacttcaaa ttacaacgta 
000541 agcatcaagt caacaccacg tgggacaaaa actagtcaaa tgagctacgt aggtgccaca 
000601 tcagctaaaa ctggagacaa tactgccgag ggaccttgtt tgcaccggtt ttataaactg 
000661 ggggacatgt tatctggttt ttcagttaag ggcgaatatt actgggcgac aaattaaggg 
000721 acccaacatg aacttattct cttttgttgc aagtttgtga attcttgggt catactgggc 
000781 cgtcctgtct gcatgggctg caagtagata gcccaggtcg acttcttttc tgcttttgac 
000841 tgttccgaat ataaaaataa attatagtaa aaaaaaagaa agaaaaaact ccaagcagga 
000901 atcaattcca cgagatcaag aagaagagga agaagtcgct tcgcgggcga tggcgagcag 
000961 ctcgtcgccg ccgccgccgc cgcagattcg ttgcgcctcc ttcaatcagg acaacaggta 
001021 cgaccgagcg aacgacaagt aactggattc ggggggagtc ggcgattctg aattttgggg 
001081 gtgggaaggg atttcttggg tcggatccgg cgacgaagaa ccctaattgt gattgcgtgc 
001141 cggttgattt gtttcagctt gttttatgtc gggacgaagg atggattcag gattttcgat 
001201 gcccatacag ggaagctcca ctaccagaag agtgagactt ccttcaatgc atcttccttt 
001261 tctttaccca tccctctgtt cttgttgctc tccattgcct agcgcgaata tccaacagta 
001321 cagcatgtaa aatttggcac agattgctcg tagattgtga agtagaaaca gttaattccc 
001381 agtaggatgt taagctgaat aaggttacat tgtgctgcct gcgttagtca gctaggttaa 
001441 tagtcattag tgtgcattga tgtatggtag aaccaaatga attttattgc cgttagcatg 
001501 gaaactggct attctatcat ggaggagaga gttgttctgt agtgctttta taagaagcta 
001561 tggtgttata gctatctgct caatttgcag atattggtgg aatcggcaat atggaaatgt 
001621 actttcggac aaacattctt gctatagtcg gaactggtga acaggtacct cggccatatt 
001681 ttccctgttt gcttgagtcg ttcctgctgt gtgattgtct gtcatactat tgaatttaat 
001741 atagacgaat ttgctagtta actaccgttc aaatttatct ctgcagcctg tactatctcc 
001801 tcgctgcctt cgccttatcg acaccgtagc agctgtcaca aagaaagatc tgaactttaa 
001861 gacttcagtt ttggctgttc gattaagtag aacgaggtat gtcaccagta ttttatatcc 
001921 tagaagggac tacattagaa acatgttagt ttttttatga tataaagata tttcttggtt 
001981 aacatatttg tgcaaaaatc atgcaatata taatgatgaa tcccatatta tacttgctcg 
002041 tttttttttc tgtaaaatag ttgtcacatc atgtgcaggc ttgttgttgt attgcaggac 
002101 aggaccttta tttatgatgt aaacagcact actatattgg aagaaattga aacagttccc 
002161 aatacaaaag gtgaggatcc tactgctgtt tgttcctggc atcaagttga aggagctaga 
002221 gaaaaagatc attaagcatt cttgagaagc tctctcacca tatttgctgt taatattgtt 
002281 attctttgta tatcaggtct ttgtgcattc gctcctaatt cagaagcatg ttatttggcc 
002341 atcccagcaa gcacatccaa aggatctgct ttagtttata aggcatcaga acctgaatta 
002401 atatgccagg taatttgaat ttgttgttta ttggttaatc ttattggctg ttgtaggcta 
002461 ttatccttcc atgagatttt ctcacacatc cccacgcatt aatgttcttc tggtcctgga 
002521 tctttcttga aattattgat ttacatgcca ttgcatttca ttgataattt aggatctctt 
002581 actgcctttt caaatcagag ggaagaaaaa agaacagtta tgcaaaatta gccgtgtaag 
002641 atatttatgt tggtataata agctgaaaat aacaaaataa accattttcc gaactgcttt 
002701 ctttcacttt gtattattaa ttattagctt tgatagcttg ttttgttctt tctttactta 
002761 tgttatgtct tttcactgtt tttgtgtaat tgaccaacag atagatgctc acgagtctcc 
002821 cttagctgca atggcatttt cttctaatgg cacgtacctg gcaacagctt ctgggaaggg 
002881 tactattatt agagtatttc tcgttgcaca agcaaccaag gtgaattcaa cgttatttat 
002941 tgtctgctct tgcaaccaac tagattttcc taaactcttt ttacatacat acttcaacag 
003001 tcacacagtt ttcggcgggg aacataccca tcaacaatat attcactctc attcggacca 
003061 tcggatgatc tgcccgatgt tcttgttgcc acaagttcat caggctcgtt gcacatgttt 
003121 ttcctcgatg ctgccagaaa tcgaaggtac atagccagct caaatattga taattcgtgg 
003181 acggtgtatg taggcatgat ctgatttact ccacttttca ggaaccaaac gagcaaattg 
003241 cttggttcaa tgattcctgg agcaataact cgtgctttgg atccagcaaa ccatcacatt 
003301 attcacaacg tcatccctgc aggaatcaag aggtgttgag ttcatctgat ttccactact 
003361 ttctaccttc cattattgtc attctaatct aatcctttgg aatttcagct gtgtagccgt 
003421 acataaggtc gaaaattcac aaaattcttc taaacttcct gctttaaggt aagaaatgaa 
003481 aacgcctttt ttctgcccct catctttatt tagcatatag ctactgtggg ttagtaaaat 
003541 cttacccatt attgtctttg caaaaacttg caggactgtt gtctatatca taactcatga 
003601 tggatacttc cgcgagtact cgatcaacac cacaaagtca aatgaatctt cctgggtttt 
003661 gcaacgcgag ctcaatctac tggataccgg ttgtagcact ccccagcggg aggaacaaca 
003721 caaggactga ctagcagact agttggctca ccaatgacag aagcttcagc tgtgtgtaca 
003781 tacaatttgt aagatagtgt gctggtaggg ctggtctgtg gtttgggctg agattctaac 
003841 tccaattgga caagtgtatc atagatgtgc ccaccaatgg tgagggatga ttcatccttc 
003901 ttgtggatgt aaattataga tagtaactgc caatatggca atataattac actacaagta 
003961 tatgtaactg ctttgct

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ225377 whdl21m08 679
more... (Total Hit Count: 5 )
/rice/oryzabase