cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073086     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0564000 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 22237812 -  22240681  ( - );   2870(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22237812 -  22238078 ( - );   267 (bp)
Exon 2 Location 22238163 -  22238222 ( - );   60 (bp)
Exon 3 Location 22238541 -  22238602 ( - );   62 (bp)
Exon 4 Location 22238824 -  22238899 ( - );   76 (bp)
Exon 5 Location 22239109 -  22239198 ( - );   90 (bp)
Exon 6 Location 22239539 -  22239610 ( - );   72 (bp)
Exon 7 Location 22239692 -  22239777 ( - );   86 (bp)
Exon 8 Location 22240298 -  22240354 ( - );   57 (bp)
Exon 9 Location 22240490 -  22240681 ( - );   192 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0564000 Os02t0564000-01 209172 J033022J16 11239 LOC_Os02g35590.1 AK073086 35158 AP008208.2 255670529 BAF09070.1 113536687 NC_008395.2 297600179 NM_001053691.1 115446752 NP_001047156.1 115446753
Os02g0564000 Os02t0564000-01 209172 J033022J16 11239 LOC_Os02g35590.2 AK073086 35158 AP008208.2 255670529 BAF09070.1 113536687 NC_008395.2 297600179 NM_001053691.1 115446752 NP_001047156.1 115446753
Os02g0564000 Os02t0564000-01 209172 J033022J16 11239 LOC_Os02g35590.3 AK073086 35158 AP008208.2 255670529 BAF09070.1 113536687 NC_008395.2 297600179 NM_001053691.1 115446752 NP_001047156.1 115446753


Chromosome: 2 ,  position: 22,237,812 - 22,240,681 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agagaccact cgtcttcttc cttccgctcg ctcgctcgct cgctgacgtg tacgcttcgc 
000061 ggcggaggcg gcggcggcgg cttccgatgg cggaggcggc gggggcggcg gtggcgccgg 
000121 cgaagctggg tctgtactcg tactggcgga gctcgtgctc gcaccgcgtc cgcatcgccc 
000181 tcaacctcaa aggtacgttg tgcccgcgcc gcgcgattgc cttcctctcg tcgtcatctt 
000241 ctatgcgtgg ttggctcatg gccgggcaga gtgagtgaac ctggtgcgtg cgtgcgtgcg 
000301 ggtgattttg atgtctgtct cctgcaggat tggagtacga gtacaaggcg gtgaacctgc 
000361 tcaaggggga gcactctgat ccaggttagg tgctacgcca cctgtctgtc aaactgcttt 
000421 cctcccccta tctatacttg tgtacggttt tgtgctgcgt ctagagactg ttcgtgcaat 
000481 taccgccgca aatttgtgct tggatgttga gaggtaagat tctagcaggc gatcggcccg 
000541 aaatccacaa ggctaggctc tgtgggggaa gatgaatagg aaggtgttcg atgaaatgca 
000601 caactgagaa aattgagatg aacatgagag gtttcggtgc agcatgtgga agcgcctctt 
000661 ttcgggattt tcttgatgca atataaagca aagtgatata tgcagatcat ggccttagta 
000721 cccttgtaac tggacgcatg atacgcacac gatgcgccat gatgtccacc cattcgtggc 
000781 acgcacccat gcacaactag ctcagaatcg taggggagga accaaaaaac aggaaactca 
000841 aaccgaaaga tagaacacat gtgtggtagc ctcaactatt ttcttttttg tttgtgggtg 
000901 gaagaattca tgaaggttaa tcctatgaag ttcgtcccgg cattggtcga tggagatgct 
000961 gtaattggtg attcttacgc gatagcatta gtaagcattc agaattttga gatgcagtag 
001021 tttatagcat caaaattggc cgcttcttga cttgtttcta tgtgattgca gtatttggag 
001081 gacaagtacc ctgagcaccc tcttttacct caagacctta aaatgaaggc cttgaatctc 
001141 caggtaatga tagattctgc actgctatgc gcaggatgat gacctcaatt aaacattcca 
001201 tttgatatac aagtgctatt tgtaatttgt tgaggttgag cagcgttgat gttcagttag 
001261 tgcctatttg agaaggtaag atcacatcag aacaataaca aaaagaggaa aggatcagcc 
001321 cacacatgtt tcaggataat aggaatactg agcacaagga tataagatag gcttaggcat 
001381 aatccagaaa atatagctta ctgtatgcac tagatttttt ttcctcttac cgattgatca 
001441 tgcctagtgt gacctttcat gacataatct aattttatgg cagatagcaa gcattgtatg 
001501 ctctggaatt caacctcttc acaatcttac cgtactggta agaactgatt tgcattcaat 
001561 ttcttactgc catgtaaggt tctctgcctg gtatttgatt actcagtgca cctgtgttcc 
001621 atgtctatct ggctgcattg tgcaaagatg catttttgtg cctcagatta actctatatt 
001681 aaacagtttg tgcttctgta gtaaaattaa tatagtacag ctcaattagg gaaaaaaata 
001741 ttgtataaca gaataatttg cgggccactt gtttctttgc agaggttcat tgagaagaag 
001801 gttggtacag gggagagcat cccatggact caacaacaga tcgacagagg tttcgcaggt 
001861 tctcctcact gacgtatcct ttattttatt aatcaaatga ctatattttg cagctttact 
001921 tccaccatca aatctgcttc aaaaaaaatg tgttatgcat aactcagttg ttttgcatgt 
001981 tgtgagaagc tcactcatat tcctcccctt ttcacattcc tgcctattta gatttgcttt 
002041 tatgtcacac catgctcact tcgttcccca atggtgtagc tgctgagaac ctagtaaaag 
002101 gctgtgctgg gaagtatgca acaggagatg aagtccgatt ggtgtgtatg ctgccctaac 
002161 aattttatcc tttcttgtat ggagatcttc tctaaggttt tttttttttt cgtgtatctt 
002221 gcttgcaaat tgtgtcactt tttccctaaa acagagtgaa gttctcccat gtgaaaaaag 
002281 aaaaaactga agtgataaaa taaaaatgca tcctcatatt cactgtactc ctcatgagaa 
002341 ccatagattg ccatttacta actttccctt tgtttatgta atcatgtttg tgaacactcc 
002401 aaatattaac aagcactgtt ttggcttcag taactgttgc atttccgtta cacatgcagg 
002461 cagacgtatt cctcgcacct cagatttatg cagcagtgac tcgttttcaa attaacatgg 
002521 tactgttctt gtgcttctta ctctatccat gcatatgcct ttatctattt tgttaaatct 
002581 aatgaaatat gttttcttgg cagttaaatt atcccactct cgcgaggctc catgaggagt 
002641 atatgaaaca tccagcattt caagcagcac tcccagacag acaaccagat gccccttcct 
002701 ctacctagaa aatacagtgt atgttcatct gaaaaataga ttaaaagttg tacccaactt 
002761 atcattggaa gctgtaacaa taagcacaga acttgttgcg aaaattgaaa ataggtgtat 
002821 atgtttttca aagcttctgt ccaaataaat gacccttaaa attgctagcc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AV938645 bah18l11 484
more... (Total Hit Count: 12 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ596914 rwhv16n10e20 848
more... (Total Hit Count: 187 )
/rice/oryzabase