cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065198     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0161200 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 3297228 -  3303780  ( + ) ;   6553(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3297228 -  3297490 ( + ) ;   263 (bp)
Exon 2 Location 3298900 -  3299037 ( + ) ;   138 (bp)
Exon 3 Location 3299174 -  3299207 ( + ) ;   34 (bp)
Exon 4 Location 3299814 -  3299949 ( + ) ;   136 (bp)
Exon 5 Location 3300034 -  3300090 ( + ) ;   57 (bp)
Exon 6 Location 3301689 -  3301786 ( + ) ;   98 (bp)
Exon 7 Location 3301876 -  3301947 ( + ) ;   72 (bp)
Exon 8 Location 3302056 -  3302228 ( + ) ;   173 (bp)
Exon 9 Location 3302552 -  3302730 ( + ) ;   179 (bp)
Exon 10 Location 3303136 -  3303336 ( + ) ;   201 (bp)
Exon 11 Location 3303524 -  3303780 ( + ) ;   257 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os02g0161200 Os02t0161200-01 200524 J013002E19 497 LOC_Os02g06584.2 AK065198 37298 AK065198.1 32975216 BAG89412.1 215694419 NC_008395.2 297600179 NM_001052511.1 115444392 NP_001045976.1 115444393 Q6H7U2 C3H13_ORYSJ
Os02g0161200 Os02t0161200-01 200524 J013002E19 497 LOC_Os02g06584.3 AK065198 37298 AK065198.1 32975216 BAG89412.1 215694419 NC_008395.2 297600179 NM_001052511.1 115444392 NP_001045976.1 115444393 Q6H7U2 C3H13_ORYSJ
Os02g0161200 Os02t0161200-01 200524 J013002E19 497 LOC_Os02g06584.4 AK065198 37298 AK065198.1 32975216 BAG89412.1 215694419 NC_008395.2 297600179 NM_001052511.1 115444392 NP_001045976.1 115444393 Q6H7U2 C3H13_ORYSJ


Chromosome: 2 ,  position: 3,297,228 - 3,303,780 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ttctccaaac cctcgcggga gatcggaatt ccccaccccg gagcgccgga tccaccaccg 
000061 atcgtcggcg gcggcggcgg aggaggctgc gacggcggag gcggagatgc tgggccctcc 
000121 tcgccgcggg ccggcgtaca agacgaagct gtgcgcgctg tggcagcgcg gcaactgcaa 
000181 ccgcgacacc tgcagcttcg cccacggcca cggcgacatc cgccgcccgc cgtcctcccg 
000241 cggcgccttc acgcaccacc cgggtatgga ttgcccccct cccccctcgc gcgcccccct 
000301 gttcgttgtt tgtcttcgag atcccccgcc cctgggttta gggtttctgg tgtctagtgc 
000361 aggaggcgga gggcgttgga tgtcctagaa ttttttattt tatcgtcgtg attgtcgata 
000421 agcttagatt agatgtatgc gttgctagat ggctagatgt gaaatggaag tgcggaaacc 
000481 ggactattgg attatgtcaa gagtagtatt ttcacaaaag ccgagtgata atgttataag 
000541 agtgagcatt ggaagtttgg aactaagcgg ctggttctgg agaacgtgac atactgggcg 
000601 gtaagcccga atgcgatgtt tggcttccca tgcaaaaaag gaatgtcata aaaagtggaa 
000661 attgctggaa tgttgccttt taagaggaca ttcgataccc atgaaggagt taggacttag 
000721 gagagaatcc agtcattgct gtaaaccttc tttatgattc gcgcgatagt ttgctggctt 
000781 ttttgtcttg ttctattgcg tttgtgattt ttactgtatt tcttatacga gtgcttgaat 
000841 tcaaccacca gttgctgcag atagaaaata attctaacaa gtggaagctt gttgcagaat 
000901 taggtggcat tcttactggt tgtcttttga tttaattatc attcaaacta gcagactctg 
000961 cagatatgtt gactcaactg ctgccagagg atagcatgac ctttttcata aattcttcac 
001021 ttggtatttc gacgatttgt gttgacgata atgcttgtgc tgtaccagaa ggtgaacttg 
001081 tgaggatctt ggatgatgcc tccattgaat gattgccaat aatatattca atgtgataca 
001141 atcatgccat tagctggctt tgcaattact gggtcacaca ttatatgatt atggtgcatc 
001201 agctagttcc attggaagta ttattctcac tggtgattca aacattttgt gattcttcac 
001261 aagtcgccat tgaagatatc tgagcaaatg ctagtatatg tatgggatat tgggactatg 
001321 ccattatgga agacctttct tcatcatact tgctatatga ggttatttat ggagcactca 
001381 tccatttcac ttcagacgat caacattatt atattaatgg gtgaatcagt ggtttcttgt 
001441 cgtatcttgg tatatgcttg tgcattattt tttggcccta ctttttttgt ggctaatggc 
001501 attatcctgg agccccagct acttattgct aattgaataa tcttgtagct caatggtctt 
001561 ggtaagctta acaggattat gggtgtccta ctatctatat attacttcct ttttgttttt 
001621 tgtttcataa gttgcttcct ttgtataaaa cttgcacctc cctgacttct agggagaaga 
001681 gattatagag ccggtgattt cagaggcagg attgatagga ggttttcacc tcggaggagg 
001741 cattcccctg gaagagagtc caggggtcat cgtccccttt atgatagaag gccatcttct 
001801 cgagaaagag gtaataactg ctttctttct ctgtcgtgtg tgtatttgca tgtgtgtata 
001861 caactgtttc tggtcgcttc tacatactga ttgcttttaa gtttatgcta tttataaact 
001921 cataaaaatg tgatttctta ctgcagattc tagctattca cgatctccta gcaggaagag 
001981 gtacatattt catttcatca tatgagcatg atcttttgaa gttaaattct aaatatgctg 
002041 tgagtgcatg ttaaagccct gatcaaagtt caatttatgg tgtctttgct tatctttatc 
002101 atcgatttat tagtatattg ccttgtcgtg tttctattgg tcttgcattt tagtttttca 
002161 tcattgttaa tcaccatttg atatgcttga gttaagatcc acacaagcta caattttagt 
002221 tctgtagttt tatattaatg gtgctgtaaa ctatcatcaa catatttgtt ccattataat 
002281 gctaaaatta tcttgctcag aatggtaagg ttttgtattc ttcctgcaga ttgtacctgg 
002341 tgatacttac tatctatcac tcaaattatt tgttttgttt tcatagtcat aagcatgttt 
002401 tcctaaaggt catgcaagca cttgtataag ctgtattttg cgatcaaagt agaacttgat 
002461 atttgaacac tggcatttcc gttggaattg tggttgggtt tactagattt attctagatg 
002521 ccttgaacat gttgagtcgt gctgaactgg taatttactt ttccacaatc tatcctttat 
002581 ttccagtgag aggaggcatg aaaagaagac tgacgatgga gaaaccaact catctaggag 
002641 tttaagtctc tctgataaca acgatgaaaa gaaaaaggac aaattctcaa gtggtgatga 
002701 gaaagaagac cacgaaaagc aggtatgaga aaaatgtaat caaattcatg gcttatacaa 
002761 gcacatttgg cacaatcttc attgcataat tatgaatatt gtgcagctga aacaaatacg 
002821 gctggatatg gaggctttgc gtgacgataa aactcagatg gaggtcagtt tctatttgtc 
002881 tcgctatatt tgttacaata tggcacatgc taccatgtta acattttgac tgccactttt 
002941 tattcactca taaaaaggag ttggtggttg tgatgatagg ttccaccatc ccatgccatt 
003001 ttaaaagatc ttttgtggat gaatctacct tagtgtgtgt gtgtgaattg taggatcttt 
003061 tgtaaaggat tacatcttct gcacatgtag acatgcataa gatgatcgat tgacgcaagt 
003121 catatattct attttaaatt tgttactaat ttgtcatatg tagacatgta tttttataaa 
003181 aaagttcaaa actaatggct tatttatctg tggtatgctg caatgaatga gcttatgagc 
003241 actatgctag taatgtgtaa attgagaaat ggtaatgcat ggatttcatc aagtgttcaa 
003301 agcgtaggtg acttttcact agtccagtac tgctgtgcca actatcaact aatagtgttt 
003361 gcatgtagaa cttagtatgt gggtattgtt tatcatcttt aatttcagac atattctcca 
003421 ttctgttcat gtttggcaca gagattgcac atcttccaat catttaatag tagtcatgct 
003481 tgacgaattg gttggcagtg cgtctttcca tgaataaccc caagagtacc ctctagtctt 
003541 gtgtccactt tggaccttca ttgacttatt gtacttgagt ttatttattt ttgtcttcct 
003601 gtcatgttat attttccgac tgagctttgg agcgggtcag cactcagcag gcacattatt 
003661 atatggtgct tgcgctcttg tttcaaatgc tttctatttt atggctgtgc taatatttca 
003721 aattttcaat ggtgctgcaa gaatttgatt tcacattgtt tttagcatct cgtgaacaca 
003781 gtacttgcta actactactt tagaaaagac tcctgctttt ttttttgttt catggaatga 
003841 tattacaaaa catcctactt ggccatgtct ctcttttaga cttttagaaa aagtcaagct 
003901 cttagaaatg ttacataaat aaatgtacac taatttataa atggttcctt ataatttgaa 
003961 aaaagtttgc attaaagaca ccatttaata atattcctac ttcatcactg ttatgagcat 
004021 gggccaggcc gatgcagcag tttaggcacg ataaattagg aataagtcat ataatggtag 
004081 gagattatct agttaggaaa gagatgaagt ttattatcta gttgggattg atttctatga 
004141 tactatagac tatccttgga tgtcaagcct gtcctcccta tatataaagg gaccccatgt 
004201 actctatcat taatcaatca atgaatctct aaagttagcc ctaatcctca gagcctcttt 
004261 tagctgagca gggagaagcc ttgccgctgc tattagtgag cgagtgccct atcactgggt 
004321 cttcggaccc ttaccctagc tactccataa cagtcactac ccattgcttg tacttagttc 
004381 cattcacgtc tataatgtta gatcatgctg aatctttgct ccaaactctt aactctagtc 
004441 aacgcactta cctatttgta ggtcattttg gatgagaaga tagatgaagt gcgcaagatc 
004501 tctagcaaag ttaatgatct tgaggtgcag cttagaaggg agaaagatga atgccatagg 
004561 tacttaagca atgtttccac atgacaatgg cacattatct tgacagtatt atccaatagt 
004621 tctatattgt ttttctatac ctttgtagga tgacctcaaa gatgaagaag tttattaaag 
004681 ctcatgctcg gtttttgaag gcacaagaag aagtgaaaag gtgctttatg ttttcatcat 
004741 gtttggcctt gtaatgctag tacacaccag attactcctt tttgcataac tatcaatcaa 
004801 taagtgttca ccaattggag ttatgcaggt cacaagctcg tttcgagagg cttggtgatt 
004861 tgcttgcttc agatattttg aagcgtggtg ctaatgaaga ggggtccagt gtcaatgaag 
004921 acctaaacga aaggagtcct aatactgcag caactaaaaa gagatcaatc ccatactcaa 
004981 caagtgaaga agcgaaagct ggtatgtagc ttagtttctc gggacactct gattgccagg 
005041 ttgtgatttg tacaatatgg atcttggtgt tatgcagcat ccaactttcc ccttctgtta 
005101 aactgatata tgtacctctt tatggagtaa ccagtcgatc ctagtatgaa gtagttcaaa 
005161 tgttccttta tttaatatta agcattaaaa ttgatgtgct tagttttctt acagtagcac 
005221 tgaaggatgc ctagtttctt ttataattgg attttaattc tttctgcaaa ttgctgaaga 
005281 agtgtcttaa ttatgtactt aaacctaatt gcttgtctcc tcagtgaaga agagaagaga 
005341 gcgagactct gatacaatga ctaggtcaga taaatatagg tcagatgtta cagattttga 
005401 taaaacaagt aaggggactg aggcaaccaa gtctttatat ttgaagaaga aattatggga 
005461 agatgaaaaa agtaagctag gagccaacat tttcacagaa aaggtgcacc atttctcccg 
005521 cccgctctca attttatgat gaactacata tcatacttag tacactcagt ccagtgcttt 
005581 gtttaaacat tatcacatat tgctagccta tgcatttgat tgcactgtat atatctctac 
005641 tagtgtaaaa gcagagttgt ccttccttcc cctcttccca cctaccgcgt acagcgagag 
005701 agtgaaaaac cgaaaggcca aacttattac ttgtctaaac aaaaagccta gttgatattt 
005761 ggaaagttcg gtcattgcca gaccttgtat tgaaactgat aggcttcctt gatcatcagg 
005821 tcctaaagcc cttcttggct atgttggcat ctgtatttat ctttgtttga ttgtgcttat 
005881 cacaggcaaa tattttgtta acttgcaggt caaaggttct cccgtcagac atgttttgcc 
005941 ctccactggc atggctgctc atgctattga tgatctcaac gaagctattg aactggagga 
006001 cagacatgaa tccatagacg cattactaga aaatgatgct gatgacaaaa ctagatcacc 
006061 tgctattccc ctgcagccac caccagtggt acagaatgct tatgagcagg tgattaaatt 
006121 ttcacctttc caaaaaaaaa tattggacct gcttacatgc acggtcagcg gcatggaact 
006181 ggacagtgca ttttgtttat aaaaaatcgt tgtactaaaa aagctccttt tttttccctg 
006241 tgcatttgct aatttgctga aaaagcaaac tcataatttg tttcatcttt tcccagtatg 
006301 agggtgatga cgaggaagtc gatgtggaat aagtggatgg cctcgtttct agacaagagg 
006361 cctctgatga agcaatggcg agattagcat cttccccagc tccttataat tagtactatt 
006421 agcatcttgg tgtacaaagt gctatctatt tgacattggg aattcagctt atatttatca 
006481 agaatccttt tgtagtaaca tccttggcgc tgagacagcc ttagtcaact atgtggagca 
006541 gccgtataaa tac

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
BY847440 bart43a02 579 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ520488 rwhcs18j04 918
more... (Total Hit Count: 4 )
/rice/oryzabase