cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061484     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0174100 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 4073887 -  4076167  ( + ) ;   2281(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4073887 -  4074341 ( + ) ;   455 (bp)
Exon 2 Location 4075118 -  4075257 ( + ) ;   140 (bp)
Exon 3 Location 4075647 -  4076167 ( + ) ;   521 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os02g0174100 Os02t0174100-01 104076 006308H09 1383 LOC_Os02g07780.1 AK061484 14045 Q6H509 SPL4_ORYSJ
Os02g0174100 Os02t0174100-01 104076 006308H09 1383 LOC_Os02g07780.2 AK061484 14045 Q6H509 SPL4_ORYSJ


Chromosome: 2 ,  position: 4,073,887 - 4,076,167 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aatgacttct tcttcctcct cctctccaca gtccacactg ttcatctcct cctcccctcc 
000061 ctcccaattc gattcccaaa tcccaaaatt gaccacccaa atccgcgcca atccatggat 
000121 tggatgcctc ctccgaagcc cacctcgccg cgctcccctc ccctcctctg ggactgggcc 
000181 gacgccgccg tgccgggctc ctcctccggc gaggtatccg ccgccgccgc cgccgccgcg 
000241 gctcatccgg gaaggcggcg gaaggagaag cgaggcaggg cggaggaagg aggaggtggt 
000301 ggtggggagg tgaggtgcca ggtggaaggg tgcggggtgg agctcgtcgg cgtcaaggac 
000361 taccaccgga agcaccgcgt gtgcgaggcc cactccaagt tcccccgcgt cgtcgtcgcc 
000421 ggccaggagc gccgcttctg ccagcagtgc agccggtgag ctcgccggag tcgcgcctcc 
000481 tcttcctctt cctctctctc tatattgcaa aaaaaaaaaa atcaatggaa gcacacagct 
000541 ccaagctcgt gcgtgccttc cttctcctcg attactttct gcaaaaagat tcccttctct 
000601 tctttggttc ttcgaattac aattacaatt tacagtttaa tcacacgatt ggttgctgat 
000661 taatttgcgc gaagctcgtg cttttttacg tgggtggtga atttttctgg tgtccgtacg 
000721 gattttccat ttccgtatat gggaggcaga gatgctatct ttccactatt ggtactgtgt 
000781 gtgtgtgcga gtggtggatc ctgctgcatg gctgagtgac tctgcaatgg gttttttttt 
000841 tccagtttta gtatggtact tgtcctgtgc cttcattttt gggattgggc cttgctgtgc 
000901 agtgagcctg tgattactgt gtttcaatct ttaaaattat tactgtgtgt atagtatttt 
000961 ttttaaagat aatggaaatg atttacacct ccggtctctc tgccaacaag catacggcca 
001021 aggagtcgag aaaagataaa taaaaatact cgaggttatg ggacaaaccc ctatctacgc 
001081 cctgattata tccagctgat tactgtgtgt agagtagaat catcttctgt gtatatgtac 
001141 tttttttttt gtatgtggga ttttttgtgt atcctgcgag tagtttatgc aacagtgtgc 
001201 taatttggtt ttggtgaatg tttgggatca ggttccatgc gctctcggag tttgatcaga 
001261 agaagaggag ctgcaggaga cgcctgtatg accacaacgc tcgtcggcgg aagccccaga 
001321 ccgacgtgtt ctcctatgca tcggcaaggc cgccgtcgtc attattattt ggtaatttgt 
001381 ctgtacctta aatggatttg caacagcagt tacttttcac tatttagctt gatgtatatg 
001441 atgtatgtga aaaatggtaa attgttggtg ataagatctt tataaggtta ctcctcggca 
001501 acctccacct accttatcct taagcacttg catgttctta cttgatcgat gggactgagc 
001561 ttacatgtga aaattatttt cagttcgaaa attcttggtt gtaagttcga ctccctgatt 
001621 aaatttattt tgatagtatc aggattactc gcaaagaaac tctacaatat cagatgttct 
001681 atcaagtttt ctataattat accctatttt ccctttcaat taagattttc cttcacacca 
001741 aaattgaaat gccactgcag atgataaccg acaaataagt tttgtctgga acaaagctcc 
001801 actcagccat gtaaggcctt tcgcaatttc tccatgggaa agctcatctg aagttgggac 
001861 aactgatgga catatttatt tggataaatc tcacatatcc aaatctctcc cagcatttaa 
001921 caccgacata gatgagctct taccaatgaa aggtatgatt ttccaaagat gtaagttttc 
001981 gtgaaaaatg tcatcaatta agactacttt catggttcag cacattgcat agatctttga 
002041 aaaaattcaa cctatacact gtaccaaatg ccaaattcag atgctgtttt gtcattgttg 
002101 ttgtttgtta aaaaaagtat cctggagttg tgcacaccca tgaaaaaaaa ttagaccctt 
002161 gagcacattt gggtttagaa aataagatgg tgtgcagtgt gctgctaagc ttatgtcact 
002221 atagttgacg aagtgtttca aacataaaag acaacagagt ttttagtaag attctaattg 
002281 g

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ314081 whyf9b15 664
more... (Total Hit Count: 2 )
/rice/oryzabase