cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119785     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0367100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 15224883 -  15229782  ( - );   4900(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 15224883 -  15225278 ( - );   396 (bp)
Exon 2 Location 15225368 -  15225432 ( - );   65 (bp)
Exon 3 Location 15225558 -  15225643 ( - );   86 (bp)
Exon 4 Location 15227740 -  15227828 ( - );   89 (bp)
Exon 5 Location 15227941 -  15228052 ( - );   112 (bp)
Exon 6 Location 15228257 -  15228350 ( - );   94 (bp)
Exon 7 Location 15228801 -  15228973 ( - );   173 (bp)
Exon 8 Location 15229243 -  15229358 ( - );   116 (bp)
Exon 9 Location 15229517 -  15229782 ( - );   266 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0367100 Os01t0367100-01 114968 002173F07 3907 LOC_Os01g26920.1 AK119785 16611 AP008207.2 255672756 BAF04954.1 113532571 NC_008394.4 297598437 NM_001049575.1 115436563 NP_001043040.1 115436564
Os01g0367100 Os01t0367100-01 114968 002173F07 3907 LOC_Os01g26920.2 AK119785 16611 AP008207.2 255672756 BAF04954.1 113532571 NC_008394.4 297598437 NM_001049575.1 115436563 NP_001043040.1 115436564


Chromosome: 1 ,  position: 15,224,883 - 15,229,782 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctgctccaat ccactctcct ccgtttgcct gatccgatcc cctcacctcc gtccctgctt 
000061 cctcccggcg accaccgccc gccgcgcgat gggcggcgcc gccgtctcca gcctgcttgc 
000121 caccccaaca ccgacctctc gacctcgacc cgtctccacc accaccgccc ccttctccgt 
000181 caacctctcc accgcagctg cccgcgcacc tcgcctcctc ctcctctcgc gccgccctcg 
000241 ccctcgcccc gccgccgcgg ttctcggtaa ccacatctct ctctttctct ctccacctcg 
000301 gattatcttg ttctcctatg tttgcggtac catgtaccat ggtgagggtg agggtgcatg 
000361 ggaacgagat gggcttgcaa tttgatgact ctttgttact tgggttttgg tacttccaat 
000421 ccaggggtgt ctgatgatac aggggtcaag atggctggct ccgacattgt tggcaagaac 
000481 gatttgctga ttgttggccc tggagtgctt ggtcgactgg tagctgagaa atggcaggag 
000541 gtattattat cagattgccc gattgttata ctctatctca gttatttacc ttgtgtctcc 
000601 tattggttta aacttcgaaa accatattcc tctttcatcg tgtggagcat aatatttttt 
000661 ttggttcaaa atggcgtatc tacttttgtt gcttctgtaa tactaggatt tttaatattt 
000721 aatcttctga ttaacataaa aaaatgatgc cgcactgtta attcgtttaa ttgagtacaa 
000781 taataatgta cactgtccgt actctgtagg aacatccagg atgcaaagtt tttggccaga 
000841 ccgcaagcac agatcaccac aacgaattgt cgaatattgg catcattccc tccttgaagg 
000901 gatccacttt tcctcagaag gttccatatg ttattttctg tgctccccca tctcgttcgg 
000961 atgattaccc tggggatgtg aggtaaatga gtacgattat aatgatgaat ccatgattat 
001021 attactgtta acagtatcat cctaccttct ggtatcatgt gagttcctaa tggctaaggt 
001081 ccattggtta ctcctaaaca tttattttct ttttaacaca taaactatcc aaatttgtgt 
001141 ttatagtgta tagtggtatt ttgctaatga atatgcctct ggcaacattt gcttgtgggt 
001201 gtaagtttct tttttgagag gaggggtttg aattcttttc cttgaaggcc agaaccatga 
001261 tacgcaactc tcttgcgtat tcaagaaaaa aagaaccatt ccagaacaaa atattattga 
001321 atcattgttg taatagttcc attccaatga tatgaaccat tcatctatct tgcactaatc 
001381 gaaacgcata catggacatg tgatgtattc ttatttcaga aaatgcgtgc agagtagctg 
001441 cctcaaattg gactggtgaa ggctctttcg tttttacatc aagtactgct ctgtacgatt 
001501 gtagtgacaa cgaattgtgc aatgaggtat ccccacaagc ctgcagattg tagctgtgaa 
001561 gtcttccata cttttctttt tggctctttt catttataga agttctagtg acattaaaaa 
001621 aaaaacaatg tatccacaag ccatattatg caactctaaa tattttttct tgacggttga 
001681 aaaactttat tgtttttgtt ttaaccataa ttattcctcc cattatgtag gattgcccat 
001741 ctgtgccaat tggcagaagc cctcgtactg acgtccttct aaaagcagag aatgttgttc 
001801 ttgaggcagg aggctgtgtc ctcaggctag caggactcta tatatcctca attgatgact 
001861 atttgttgtt ctaaagtgca agcaatatta acgcaagttc ttttacattg gtatgaagag 
001921 aactgataca acgtttcctt gacttggaca cacaaaatag atagaggtgc tcattttttt 
001981 tggttgagga aaggaacttt ggacacacga ccagatcata ttatcaatca aattcattat 
002041 gaggtaatga gctgcaagtt tatctcagtt atatgtcttg ttatgctgtt ctttctttat 
002101 ctgtcgtatc atttgcattg tgatcacaac tgtggaactt gggtttactt accatacata 
002161 gttggtactt tttataattt agatctaact tgtttgattg tataaaagca tatgcaattc 
002221 cattttataa tttatagtgc gttgagatac attcgacagt ctaaattaag ttgcaatata 
002281 tcttattatt gtaatctagg aaagaacttt tcaacctact attctgtatc ttatgttttg 
002341 gttgctttct attgtatatt tcgatctctg gttttatgaa ctcatgaggg gtttccatga 
002401 ccttatatat actcctaaat atgtagttat cactacatta tcctaataca aatagctgta 
002461 aactacccaa aatatcgaag aaaagaaata ctgttctcac ataacatttt agattatact 
002521 ccctccattt ctaaatattt gacgccgttg acttttttaa atatgtttga ctgttcgtct 
002581 tattcaaaaa atttaagtaa ttattaattc ttttcctatc atttgattca ttgttaaata 
002641 tgcttttatg tatacatata gttttacata tttcacaaaa gtttttgaat aagacgaacg 
002701 gtcaaatatg tgctaaaaat tcaacggtgt caagaaacgg agggagtata tagtaattgg 
002761 atatctccca agagtcactt gcttggtcct agaaacaagc taggcaaaga gtcctacatt 
002821 aatcagaaat aatcattatc ccacattaat aaaaaaaatg ggaacatcgt gatattgata 
002881 gtccattttt tagattgcac gtgacttgga ggaaggttag tttattctag ggagcaaaac 
002941 aacagagctg gtgtggcatt tcagctatat ttcaagcaaa agagtcaata tgtccaatat 
003001 aatttagtta gaaatatcta ttgagcattt gggttaacgt gaaaaataac aaaatgtatt 
003061 tttacaaaca gtttccagcc catggtcatt gaattaaaga cacaacttgt tatcttttca 
003121 atagcagttt tcttttcttt ttttaagaaa aaactggaat gacgcaaaac tgtaagcaat 
003181 atttctctgc aggaaacaac agttttgcac ttgttttggg agagataaaa tttcaaaatt 
003241 cgaaggtctg atgtttatgg catatctaaa gggcctaggg atctgtttga ccaattgtct 
003301 tctttggccc cgtttggtag agctccaaac tccaactcca gtgggagcta gctcctatag 
003361 gagctaaggt ggttgtgaaa gtgtttggct agacttgtta gcttcacacc accacgtccc 
003421 ctgtagtcat ttcgtcgaac acttggttag cgtcgcccca ccgtcagctt gtgcaccacc 
003481 accgccgacg cccgccgccg gcaccgccac tggtcacccc gtgcgctgcc accacccagc 
003541 ccatgctgct gctgcccgcc gctcgtgtcc accgccgtcg acgccaccag cccgcgcgcc 
003601 atcgcccggc acccagcccc cgcgctgtcg gccagccctc gcgccgccgc cgaggccgcg 
003661 tgctgccgct agcccgcgtg ccgccatcga ggccgtgcgc cgcctccgcc agcctgcccg 
003721 ctgccggttg ccgccggatc tcgctagaga tgatgggagg atgggaggag agagaatgtg 
003781 aggaggagtt taggggtagt ttagtggcat ttttttggta atacatcaaa aaaaattaaa 
003841 gggtagtggg tcttttgggg tggagtggag ctgtggagca gcaaaaaccc agctccaccc 
003901 ccgtattaca aatttgtgga gcagccttgc caactctgct ccaaaaaata gagaatctgt 
003961 actttggcac agctctagct ctaggtaagt aggagcggga gctggagctg tgccatacgg 
004021 ggtctttata tcatcgtgtt tccccatggg ctttttcatg ttcattgcat ggggtggcta 
004081 tgatggctgt ttaattagct gttagtattg gtgtaattct ttgtggtaat tatttgcagg 
004141 atgctgcttc ccttgcaatt gccataatga aaaagggaca caggggtcga atctttttgg 
004201 gctgtgacaa taagcctctt tccaggtcag tgctaggcta cttgttttga ctaattattt 
004261 gtttcctacg tccacttagc tgtgtatcat gactgcacta atagctgaac gggtctgtca 
004321 actgaaacaa aatttacttc aacttttcag gcaagaaata atggactctg ttaacagaag 
004381 tggaaaattt gacacgaagt tccaaggttt tactggttag tattctacat gttcatttat 
004441 gcttatattt tactccacag gcattcgcat ctattgcata atcttcattc tgccttaact 
004501 gcaggtacag atggtccact gggtaagaag atggagaatt cgagaactcg ttctgagatt 
004561 ggttgggagc ccaagtatcc aagcttcaca gaattccttg gtcttgacag ttgacatgct 
004621 tgtgtatgct tgcaaaaatc ttcaactcta aatgaacagc aacacgttgt gaaccagtta 
004681 ttttgttttg tttccattgc gtttttttta aaagacgtaa atactgtata tcttgttctg 
004741 ctatgtgctt atatcagtta gcgttctaag tctgaccgtt gtacaatggt ttcggccaga 
004801 gaaatatttc cacccgtgtc atgttggcct cgttctggtc cgtccaacat ctatttgtct 
004861 ctttgtaacc acatttgtta tgaaaacttg gtttcctttc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AK252739 FLbaf172a22 1209
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ219560 rwh34n06 671
more... (Total Hit Count: 21 )
/rice/oryzabase