cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060804     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0963600 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 44229236 -  44230627  ( + ) ;   1392(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 44229236 -  44229660 ( + ) ;   425 (bp)
Exon 2 Location 44230101 -  44230627 ( + ) ;   527 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0963600 Os01t0963600-01 103106 001033F08 8912 LOC_Os01g73250.1 AK060804 10750 AP008207.2 255672756 BAF07401.1 113535018 NC_008394.4 297598437 NM_001052022.1 115442414 NP_001045487.1 115442415
Os01g0963600 Os01t0963600-01 103106 001033F08 8912 LOC_Os01g73250.2 AK060804 10750 AP008207.2 255672756 BAF07401.1 113535018 NC_008394.4 297598437 NM_001052022.1 115442414 NP_001045487.1 115442415


Chromosome: 1 ,  position: 44,229,236 - 44,230,627 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agcaagcaaa gcaaagaact tcccttgcac caccacctga tcggagaagt agctagctgc 
000061 aggagagaaa ccgaccaaca atgacggagt actactccag caccgtggac gagtgctacg 
000121 agaccaccgg caggcagcac ggccacgggc acggccacgg tcacgggcac gggcacgggc 
000181 atggtggcat gagggtggag tcccacaccg acgactacta cagcgagggc ggcgagatcg 
000241 accgtgggag gaggaacaac tccatgcact cgcaggagta cctgatgagg cagcagagcg 
000301 gccatggcgg ctacggctac ggcggcggcc agcagcagga gtactacaag cgggaggagc 
000361 gcgagcacaa gcagcgcgag cgcgtcggcg agatcggcgc cctcgccagc ggcgccttcg 
000421 ctctcgtatg tcttagatct tctcatcttc gaataattct tgatgtattc cctccttttt 
000481 tttatagatg ataccgtcaa attttaaaca catatttaac aattcattta ttcaaaaatt 
000541 ttatataact atataagatg taaatcatgc ttaaagtacg ttaagtgata aaataaataa 
000601 ataaaaatat aaatacacaa ttttttaaat aaaatgaatg gttaaatttg tgatgaaaac 
000661 caacgacatc atctattgaa aaacagagat agcattatat taaattagag caattttatg 
000721 gtttttaaga tgtataccac acgtttacat taaaactttt ggtacgtaca tcataataca 
000781 ttctcaagga ttgtaaaact gcttattaaa ttagctgaat atatatatat cgatcggtaa 
000841 tatatacgat gtgttggatg atcagtatga ggggcaccag gcgaagaagg acccggcgaa 
000901 cgcgcagagg cacaggatcg agcagggcgt ggcggcggtg gcggcggtgg gcgccggcgg 
000961 ctacgcctac cacgagcacc gcgagcagaa gcaggccagc tacggcgcca aggagcagca 
001021 gtacggctac gccaggatgc cgcagcagca gggctactac tgcaactgat taattattaa 
001081 tcacccccaa attattaata atccatgcgt acgtacgtac cactaaataa atactggcta 
001141 ctacgtacgt atatatacgg tacaataaga tgagcaagga tgtacgtacg tacacgtata 
001201 tacgttgctc acccacaatt tcgccgccgc ggccgcgcgc cttattccaa accagtgtat 
001261 gtgtgtacgt acatctatat atgtactgtg atttctgtaa acgtgtggcc atcggatcga 
001321 tgaattctac cgtgatgata gaaactgctt cctcgtactc cctccatccc taaatatttg 
001381 acgccgttga ct

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AV909104 baak11j19 564
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ283133 rwhr14i06 449
more... (Total Hit Count: 59 )
/rice/oryzabase