cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071574     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0539200 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 21820752 -  21823555  ( + ) ;   2804(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21820752 -  21821070 ( + ) ;   319 (bp)
Exon 2 Location 21821166 -  21821359 ( + ) ;   194 (bp)
Exon 3 Location 21823094 -  21823555 ( + ) ;   462 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os11g0539200 Os11t0539200-01 207459 J023105D14 6634 LOC_Os11g33270.1 AK071574 7129 AK071574.1 32981597 BAG92562.1 215701138 NC_008404.2 297612483 NM_001074565.1 115485778 NP_001068033.1 115485779


Chromosome: 11 ,  position: 21,820,752 - 21,823,555 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cacacaacca ccactcacca ccaacatggc gacgacgacg gcggcggcga tggtggtggc 
000061 aatgtcggtg ctgctgctgg gtggcggcga ggcggcggcg ccgcggaagc cggtggacgt 
000121 ggcgttcgag aagaactacg tgccgacgtg ggcggaggac cacatccact acgtggacgg 
000181 cgggcgcgag gtgcagctct acctcgacaa gtccaccggc accggcttcc agacccgggg 
000241 ctcctacctc ttcggccact tcagcatgca catcaagctc gtcgccggcg actccgccgg 
000301 caccgtcacc gccttctacg tacgccgccg ccattgctcc ctgatcctct tccccttctg 
000361 cttcttgatc ggagatcgat gatgtgtggt ttttttgcat tggggaattt gcagctgtcg 
000421 tcgcagaact cggagcacga cgagatcgac ttcgagttcc tggggaacag gacgggggag 
000481 ccgtacatcc tgcagacgaa cgtcttctcc ggcgggaagg gggaccggga gcagaggatc 
000541 tacctctggt tcgaccccac caaggactac cactcctact ccgtcctctg gaacctctac 
000601 atgatcgcgt acgctaatta cccctcatta acacccccac ttatttactt gcattgtact 
000661 ccctcatttt ccgaagaaaa taaaaataag gaagcacaat ctacaactat caactctggt 
000721 aaactttgag attcgtagta ttaaaatatt ttataatatc tttataatgt cgttaatttt 
000781 ttatctaacg tttgatcatt cgtcttataa aaaaattatg taattatcat ttattttatt 
000841 gtgattttaa gtatgacata aatattttca tatttgcata aaaaatttga ataaaatgaa 
000901 tagtcaaacg ttataaaaaa tgtattatat attaaaatac agacagtata ttttaagaca 
000961 aatagagttg tagaattatg ctgtgtttag attggcccaa agtttaaaat ttgattgaaa 
001021 ttggagacga tgtgactaaa aggttgtgtg ttgtatgaaa ggttcgatgt gatggaaagt 
001081 tggaagtttg aaaaaaaact ttgaaactag tatatgagta tattatagcc cgggagagta 
001141 ttacattagc agaatgattt tctctttttt tttcctcaaa atgtagccag gtaggatggg 
001201 tctaatcctg ccttagactg ggatgaaagt agtaagagta attagtgcgg tgtcagtagt 
001261 actaagatgc tttgaatcca ccgtaaagat gagcaaagca aaaggtacct gcacggtgag 
001321 acgagagatt ggcgcgcatg tgcaattgat tttggcgcgc gtgtacatgt cgtccctgac 
001381 cagcagagtt cagaaagaac atgaaaagca gggatgggtc ggtcggcggt ggggcccaca 
001441 cgctgacacg cgccgatgct acagcgttgc acagtgcgaa caagaagcgg atagccgctg 
001501 tgcgctaaca gtttattgaa agcaaaccgc aataaattaa aagctagtag tagtagtatt 
001561 aactgaaatt actactccta ctactacttg atgaaaatac tatgtatttc ctgtgttcca 
001621 gtaaaatcct atgatagccc tattatattt ctaaatttca gattttccag tgcaagtttt 
001681 tatttctata taattttttt ttcttgtaat acatttctgc aacatttcct taattttttt 
001741 tatagtagtt aactcattta tttatacaca taagttttgt tatagaaaat tatagattac 
001801 ccatttatga accaatttta gctgtctcag tcgggtctag aatctacata aaaatccagt 
001861 aaaattcata cgttctaaat gtatatatat acatgtgcag gttaattatt tcccatcaat 
001921 ttatacacac aaaatgttat gaaaaaatgt acagctatct caaacagatc taaaatctac 
001981 ctcatccgtt tcatattata agttgtttaa aagtcaaact actttaaatt tgatcaagtt 
002041 tgtaaacaaa tatagtaata tttacagtag caaattaatt ttattaagtc tacaatttaa 
002101 atacatcttc ataatatatt tgtgttgggt tgaaaatgtt actatttttt ttctacaaac 
002161 ttgattaaac ttagaacatt ttaacttcca tcgaagtcaa aacgacgatg aaacgagagc 
002221 agtttgattt taataaaaat caaagcaact tgtaatctga aacggaggga gcacatgaaa 
002281 atcctgtaaa cttcatacgt acgttctgaa atctgaatgt atcgatctat caatatatgc 
002341 aggttcttcg tggacgacac gccgatcagg gtgttcaaga acagcaagga cctgggcgtg 
002401 cggtacccgt tcaaccagcc gatgaagctc tactccagcc tgtggaacgc cgacgactgg 
002461 gccacccgcg gcgggcggga gaagaccgac tggtcgcggg cgccgttcgt cgcctcctac 
002521 cggggcttcc acgtcgatgg ctgcgaggcg tcggcggagg cccggtactg cgccacccag 
002581 ggcgcccggt ggtgggacca gccggagttc cgcgacctcg acgccgacca gtaccgccgc 
002641 ctcgcctggg tccgcaagac gcacaccatc tacaactact gcgacgaccg cgaacgctac 
002701 cccgccatgt cgcccgagtg ccaccgcgac cgcgacgcct gagatctcat cgagatctgt 
002761 gatcgatgct tgctggccgt ccgatggatg gatggatgga tggg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AK251116 FLbaf105h14 1231
more... (Total Hit Count: 210 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ663650 whkp17c23 773
more... (Total Hit Count: 24 )
/rice/oryzabase