cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK121075     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0524400 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 20876730 -  20883247  ( - );   6518(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20876730 -  20877394 ( - );   665 (bp)
Exon 2 Location 20878001 -  20878198 ( - );   198 (bp)
Exon 3 Location 20878822 -  20878983 ( - );   162 (bp)
Exon 4 Location 20879087 -  20879235 ( - );   149 (bp)
Exon 5 Location 20879413 -  20879560 ( - );   148 (bp)
Exon 6 Location 20879641 -  20879709 ( - );   69 (bp)
Exon 7 Location 20879795 -  20880043 ( - );   249 (bp)
Exon 8 Location 20880261 -  20880455 ( - );   195 (bp)
Exon 9 Location 20880768 -  20880884 ( - );   117 (bp)
Exon 10 Location 20881302 -  20883247 ( - );   1946 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os10g0524400 Os10t0524400-01 215794 J023061O15 11180 LOC_Os10g38060.1 AK121075 23198 AP008216.2 255679158 BAF27022.1 113639717 NC_008403.2 297611005 NM_001071643.1 115483029 NP_001065108.1 115483030
Os10g0524400 Os10t0524400-01 215794 J023061O15 11180 LOC_Os10g38060.2 AK121075 23198 AP008216.2 255679158 BAF27022.1 113639717 NC_008403.2 297611005 NM_001071643.1 115483029 NP_001065108.1 115483030


Chromosome: 10 ,  position: 20,876,730 - 20,883,247 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 cttccttcct tgtgcagttg tgcgggttgg ccggcccgcc cgtggatcgt cttccaaccg 
000061 ggcgcgagtc ggagtcgcga ccgcgaccgc gacctcaccc accgtttctc gatcgtttct 
000121 ctccctcctc ctcccgcgat ccggtcttct tcctcctccc cgtcgtgctc gccgcccacg 
000181 actcctcctc ctcctccacc accacccctc cacgacgcgg cgggcggcga gcgcgcgcct 
000241 cgtctcaccc tcacgcctcc cacgccttgg aacccaattg gagatagaag aggggagcgc 
000301 gaggtcaaac caggggaatc ggaatcggaa tcggaatccg cgacgagacg accctacccc 
000361 cgcgctccgg cgaccgaccg gcggcgatgg agggcggaaa ccacggtggg ggagggtacc 
000421 cctacccgcc gccgcagcag tatccttacc cgtacgggca gtacccatac cagtatcctc 
000481 caccgcagca gcagccgccg ccgccctccg cctacctctc gccgtcccgt tcgttccacg 
000541 gttacccctc cgcgccgccg ccgcagccgc agccgcagcc gtacgcgcac cattccgccc 
000601 cgctccagcc ttacccgccg ccgccgcagc accatgccta cccgccgccg cagccgcatc 
000661 cgccctcgcc gtacgtctac gacccttacc acgcgcccgc cgcggcgtac ccttcctacc 
000721 cgagccccaa ccccagcccg tccatctccc cgagctccag cttccaccac caccctgaac 
000781 cgccatcgcc atcgccctcc gcgccgtcgt acccctccat tgcggatggg ctcgccaaca 
000841 tgcacgtctc cgaccgccac gactacccgc cgccgccgtc gccggcggcc gtgcccgcgg 
000901 cgtcgtcccc ctccgtgctc ccgccttccg cgtcgttccc cggcggcggg agcagccacg 
000961 gcggtggcgg gatgcagatg gtgccgtacg gccctcctgc cggagggtcg cagcacggtg 
001021 ggatgcagat ggtggcgtac ggctcgccgg ccggagggtc gcagcacggc agcgtgaggc 
001081 catccctgaa ggtggtgctg ctccacggca ccctcgacgt ctgggtgtac gacgctcgga 
001141 acctcccgaa caaggatctc ttctccaaga gggtcggcga cctcctcggt ccgcgcctca 
001201 tcggcgccgt cggcagcaaa atgtccagcg ccaacatgac cagcgacccc tatgttacca 
001261 tccaggtctc ctatgccacc gtcgcgcgca cctacgtcgt tcccaacaat gagaaccccg 
001321 tttggacgca gaatttcctt gtccctgttg ggcatgatgc cgccgaggtc gagttcgttg 
001381 tcaaggacaa tgatgtcttc ggtgctcagc tcataggcac agtgtcgatt cctgctgaga 
001441 agctcctttt tggagaaagg attaacggca tctacgatgt gcttgagtcc aatgggaagc 
001501 catgcgctca aggtgctgtg ttgcggctgt ccatacagta catcccggtg gctcagctca 
001561 aaatgtatca ccatggtgtc attgccggcc cagatagcct gggagttcct aatacttact 
001621 tcccgatgcg gcgtggcaat agagtgacac tgtatcagga cgcacatgtg cctgatggtt 
001681 gtctcccgga tttctgtctt gatcacggaa tgcgctatca gcacgggcag tgttggcgtg 
001741 atatctacga tgctatatgc caagcacggc ggttgattta cattgtggga tggtcagtgt 
001801 tccacacaat ccacctcatc agggaaggag ttgagaagat gccatcactt ggggaactgt 
001861 tgaagatgaa gtcacaggaa ggggtgaggg tgttgcttct tgtgtgggac gatccaacat 
001921 caaggagtat tcttggaatt aagacggtat gagttattca ttgagttcaa aattgctttg 
001981 ttcatgactt ttacaccgca cacgagaaca tgattttgtg tccaaactcc aaactgcaaa 
002041 tttataaatt gaagtgctgc aatgtttatg gaaaaattgg gaaacattgg cacttgaaga 
002101 ttgtctaatc ctcaatacac aaatacaaaa aggcatcaga aagggcattt ttacaactgc 
002161 tgttatcaca ttaaagaatt tacaaaacat ccggttgcat caatataaca ttgagaggat 
002221 cttcatcaag ctcatctatt tcctccaaat ttttctgtaa tagtttggta gcttgtcctt 
002281 taggtgcatg taccttatct ttggtcccat gtttcatgat gctggaaagt ttgaagtaga 
002341 ttatgctgct tatccacttg taggatggtt tcatgggcac acgagatgag gagacccgca 
002401 gatttttcaa gcactcttca gttcaagtat tgctttgccc acgatctgct gggaaacggc 
002461 acagctgggt gaaacagcag gtattgtgat gccacacaaa cttatccatt atgatattcc 
002521 atttttgttt gtcacctaaa ttactacaat tgattgcacc aagtgagtgg tttcaaactt 
002581 tttatatgtc tactcttcat gcttggaagt tatgctgtac ttcacaatcg ctgttcctta 
002641 tacctgatca ggaagagaaa tttgatattc acataatgca cacatatatt tgttgttgga 
002701 ttcttttgta taatggcatt tatcaagcaa tcttgtattg tattaattct tttagtacca 
002761 tgtatttatc atatgatggt attgaaattc aggaaacagg aaccattttt actcatcatc 
002821 agaaaacagt tattttggat gctgatgctg gcaatcataa gaggaaaata attgcttttg 
002881 ttggtggcct cgatttatgc ggtgggcgat atgatacacc tagccatcct ctatttaggt 
002941 ctcttcagac tgtgcacaag gaggattatt acaatccaaa ttttgctgta agtgtttgat 
003001 tcctttaaca tatacttgta tcttgatgtg gtttctgatg taaagctaca attaacttct 
003061 tgcttttgag atgatgatag taagaaacgt atctaatatt tagttcctaa ccatggaata 
003121 tctttcgaca gaaagctgtt ccatctttct cttatctttg gttcctgaaa gtttctttct 
003181 ctctctgctt ttttttttct gcagacagtt gatgctcgtg gcccaaggga accatggcac 
003241 gacttgcatt ccaagattga tggtccagcg gcatatgatg ttttgcaaaa ttttcaggag 
003301 cgttggttaa aggcatccaa acgccatggg attaaaaagt taggaaaatc atatgatgat 
003361 gccctcctca gtattgaaag aatacctgat tttataagca ttaatgacgc aatatatttt 
003421 agtgacaatg atccagagac gtggcatgtt caggtattta tagtatcttg tagtcagtgt 
003481 gtgtaagttt ttccttgttt taactttcta cttaaacttt atttgctttg aaacctaggt 
003541 gtttcgttct attgattcaa attctgccaa aggatttcca aaggatccac gggaagcaac 
003601 ccgcaaggta attgagtact gtttgcatgt actaatatta tattcattat tatgtgcttt 
003661 tcgctaacac cttgctttgc ctagcagaat cttgtttgtg ggaagaatgt actgattgat 
003721 atgagcatac atactgcata tgtcaatgct attcgtggag cgcagcactt catttatatt 
003781 gagaaccagt atttcattgg atcttcgttt aattgggatt caaacaaaga tattggtaag 
003841 catatggtgt aaagttattt ttttaattaa tgtgcaccca ccaataaaaa aaatccagaa 
003901 acaaaataca gtgcacatta cattttcttg atttgcaaac catttcagca attcagaaca 
003961 cagcaaatcc cttatctgat cctaaattgg tattcaaatt gtgagttttc aggggctaat 
004021 aatttaatac caatcgaaat tgctctcaaa attgcaaaca agataaaggc aaaagagaga 
004081 ttctctgcat atatagtaat tcccatgtgg cctgagggta atccaacagg tgctcctaca 
004141 caaagaattc tttactggca ggttagatca acatgtctgc tttgtgtctt gtttaatgtt 
004201 tatatagatt atacccagtt agttcatttg acatgatcgc atgttttttt tgttgctcct 
004261 gtagcacaag acaatgcaaa tgatgtacga aacaatatat agggccctga aagaagaggg 
004321 tctagatgat ctatatgagc ctcaggatta tctgaacttc ttttgtcttg gcaatcgtga 
004381 agttgctgac agtccaagca cttcaaactc aacaagcact cctcaggtaa gacgtcttgt 
004441 tttttccttt gacaaactat gctgaggacc ctccattggt tttagttttc cctgcaaggt 
004501 taaatgcttt tttttttcat ttatagtatt aaatacagta attaatgtca cattgaattt 
004561 caacaaaagt cacaatatgg tcccttaagc ctgcgtcata cgagaatgtg aaagctgctg 
004621 atcttgccga cctctgaaga taaattttgc tctgacttgc catattacac tggttcttaa 
004681 aggatattga tatcaagtct tgttctctga tcctacatgg aggccaaata tccaatccac 
004741 tttagtttct ttatcagatg atacatggaa attctggttt tgtacacttg tgccttttat 
004801 ttagaagaaa acattcgatc ggttagaatg atttggctca attgtctaga tgttctacaa 
004861 taatgtttca tcttgttgga gcactgtgta tagtatttaa cttttgattt atcaaaatta 
004921 caggatatat taatatgtat gatatgcttg ctagcaatct cgctgaactt tgttattttt 
004981 ttaacatctg acttgcatga aaactgcctg catgcaacct cgttcattta ttctacattt 
005041 actacccagg aacaagctag gaaacataga agattcatgg tatatgtaca ttcaaaaggc 
005101 atgattgtgg atgatgaata tgtgataatt ggatcagcta atatcaatca gaggtccatg 
005161 gaaggtatca gagatactga gattgcgatg ggtgcgtatc agccacagta tacatgggca 
005221 agtaaggttt ctgcaccccg tggacaggta acaacacttc atgcctgtat ggctgtatca 
005281 catttctgga gatctacaga gaaccgagct ggcatcatat gctcatatat taaacattgc 
005341 gccttcagtg attgtacatt tgcaactcgt ttgctttaca ctgttattgt ctgttgttca 
005401 gcactactgc atcaatccag ccatatatat ttgttgcaat tatcttttgt tttggcagag 
005461 taacctaaag ggaaattcgt accctatcaa tcatattttt ttagataagg ctaaaaaaag 
005521 ctaccactca ctcttaagaa tatgttaatt ggaagaaaaa aagagaagct accattcatt 
005581 ctcaagaata tgttaattga agaaaaagag agctatctac accatccatc atggtgggac 
005641 cagattgtag ctacaaatgt atggaaaata caaatgtatt tgtagaaata gagaaaaagt 
005701 tgcatatcaa gtacagtcat atttcaaata gccctgtaca actgtgaagg aatctcgact 
005761 agttgtctct tggtttgagg gatataccta ttttaggatg actgatattt ctagaaccac 
005821 actctaattc aaatctgctg atttcatgtg tagatttatg ggtacagaat gtctctttgg 
005881 gcggagcata ttggagtggt tgaggaaggc ttcaactatc cagagaccat ggaatgcatg 
005941 agacgagttc gccaaatcgg tgaacagaac tgggaacgat ttgttgataa tgaggtgact 
006001 gagatgagag gccacctaat gaagtaccct gtaagtgttg accgtaaggg caaggtgaaa 
006061 cccttgccag gatgtacgtc attcccagac atgggtggta acatctgtgg atcattccga 
006121 gccatccaag aaaacctcac aatatgaatt tcgattatct gtaagtatac aattgctagt 
006181 gattctgagc tattctgctt cctgaggtta tagatagcgt gaaaattttg ctagcaatat 
006241 aggttgaaac caagtaggac atgacaagaa aaggttatta ccctgcattt tttatgcctt 
006301 tcttaagaga attcaacatt tccatcttaa taggttttct ttttatgtat actttttatc 
006361 aatgtataga agattaagaa tgtttgaaag cccggaaccc tctgtttagg gaacatggct 
006421 ttggtagcaa ctttgattga tttaagtatg tagcgacatg taaagccatt aaaataagtt 
006481 tctagtgtaa ttattttcag ccttgatttg ctggttcc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AV833193 bags22j15 529
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ630454 whcs3n04 769
more... (Total Hit Count: 40 )
/rice/oryzabase