cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111579     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0533600 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 21253339 -  21257096  ( + ) ;   3758(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21253339 -  21253678 ( + ) ;   340 (bp)
Exon 2 Location 21253948 -  21254077 ( + ) ;   130 (bp)
Exon 3 Location 21255102 -  21255239 ( + ) ;   138 (bp)
Exon 4 Location 21255421 -  21255753 ( + ) ;   333 (bp)
Exon 5 Location 21255971 -  21256154 ( + ) ;   184 (bp)
Exon 6 Location 21256228 -  21256408 ( + ) ;   181 (bp)
Exon 7 Location 21256843 -  21257096 ( + ) ;   254 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os10g0533600 Os10t0533600-01 J013088I11 202240 J013088I11 2111 LOC_Os10g38950.1 AK111579 30935 AP008216.2 255679158 BAF27070.1 113639765 NC_008403.2 297611005 NM_001071691.1 115483125 NP_001065156.1 115483126 Q336X9 MPK6_ORYSJ


Chromosome: 10 ,  position: 21,253,339 - 21,257,096 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attccgcggt cgccgcccga gtcaaaaaga gggggaagct tctcccacca tagtcctcct 
000061 cctcctcctc ctactcccat caacgactag tcgcggcgac caagagccaa accctacgcc 
000121 tcctcccctc cccctccacc tcgtcctccc cgcgagcggc ggcggccatg gattcctcct 
000181 ccggcggcgc gggcggcggc ggcggcgcgc agatcaaggg gatggggacg cacgggggcc 
000241 gctacgtgct gtacaacgtg tacgggaact tcttcgaggt ctcctccaag tacgcccctc 
000301 ccatccgccc catcggccgg ggcgcctacg gcattgtctg gtgcgtttgc ctcgccctcc 
000361 cctcccctcc cgagttatgc gtgtgggttt actaattaat agcgaatccg agttgctatt 
000421 tttgttcgaa aattcgcgag ggcgtttatg tgttcgtgac acatcgcgta gatttggctc 
000481 cggatgttgt gttttaggca taaggatgtg tgggggaaat gggtcacggc ggcccaaaaa 
000541 tgttatggtt tgactgcttg agtagatgtg attatattgt agtagtaatt ttgtttttcc 
000601 tatttgtagc gcggctgtta actcggagaa cggcgaggaa gttgccatca agaagattgg 
000661 caatgcattc gacaaccata tcgatgccaa gcggacactg agagaaatca agctgcttcg 
000721 ccacatggac cacgagaatg taagagctgt ttgtttaaat tggttttcga cattcctagt 
000781 gattattgat cgaacttggc cttaccacta ttaggtaatt tattgggtgt gatttacatt 
000841 tagtttacat tggtaactaa cttttcctaa ggacattttt cgagtgcaaa caccatattc 
000901 cataatttgt tagaaaagcg gcagcaacac tttagacctt tctgtagtta cttacttgct 
000961 tgtaaagagt gcattactaa ttgctattat tggttatgat agattaattg tactccactg 
001021 aaagatcatc ctatccctta tattccactc attgcttcac tcatactctg ctatcaagtt 
001081 gtgtgactag ttggactagt cgacaagtca tccaaggggc atgacttaac ttgttggcag 
001141 cagaagatgc tatggagtaa gggcagcatc aatgagccac tattgagcaa attgggcctc 
001201 gcttgggagg cctggtgcat cgggcccatt gttaatgagt gaaacagaga ggagaggcaa 
001261 acagattaac agtagaggca atcggtatat atatgttgta atggtctaat agaccagtca 
001321 accagaacaa tagtcctaac tagccacaac tagtcgggca agtcagcaga gggatgactc 
001381 aactcgactt tacgatttaa caaccttgca ctcatgtggg ccgtagggga tgtcaacact 
001441 cttatactta caaagaactg ctatgctaca agtggaatac ttcatcttta gtcgtttcat 
001501 tactaagtca tagtagtgcc agatccaagc caggatgttg tacataagga gtaaccttgg 
001561 gctcagctga caccatatgt ttattaggtt tctatctcta caggtagttt tgtttgcttt 
001621 atttaaacat acaaactgga atgtggtttt cactttctgt tatttccttt tttttttgtt 
001681 gggcggtcaa gagcgtgtga tacatttttg actcacacat ttatatcata tagtctgatg 
001741 gtgattttaa cactggatca cagattattg ccataaagga cataattcgc cccccaagaa 
001801 gagacaactt taatgatgtt tacattgttt ctgagttgat ggatactgat ctccatcaga 
001861 tcatacgctc aaatcaacca ttgactgatg accactgcca ggtttgttgc ttccagcttg 
001921 tgctttgctg aaacattttg cttgcagaaa atctagacag agatttccat gcaccttgtt 
001981 cctttggtcg ctatatgttt tcttcatcct atccatattt cagcttaaca ttctcttgtt 
002041 tatctggttt aataatcaca agtgacatgt tttgcattgc agtacttcct gtaccagttg 
002101 ctacgagggc taaaatatgt gcactcggca aatgtcttgc accgtgatct gaagccaagc 
002161 aatttgttcc ttaatgcaaa ttgtgatctc aagattgctg attttgggct tgcaagaacc 
002221 actacggaga ctgacctcat gacagagtat gtggtcactc gttggtatcg agcaccagag 
002281 ctgctgttga actgctcgca gtatactgct gctattgatg tctggtcagt tggatgcata 
002341 cttggtgaaa ttgtgactcg tcaacccctg tttcctggaa gggattacat tcagcaacta 
002401 aaattgatca ctgaggtaag gcttgtctgg ttcattgctt gcatactttt aatgtctgca 
002461 taaacgtaat tttttatttg tacttgaata agagatacat tacttgaact ctgaatatgt 
002521 aaatgtgttt ttttttgggt ccattttttt ttctgttttc tttgcttttc taaaatgtat 
002581 ccctgtaacc caagtggtat caatattaat cagacccttt tctcttcaaa agctgatagg 
002641 gtcgccagat gactcaagcc tagggtttct tcggagtgat aatgcaagaa gatacatgaa 
002701 acagctacca cagtacccaa ggcaggactt ccgcttgcgc ttccgcaaca tgtctgctgg 
002761 tgcagtcgat ctgttagaga aaatgctggt gtttgaccca agcagacgga taactggtac 
002821 attgacttta caccaactac tccacttttg ttgcctttac tgtaaattga acattatttt 
002881 tccatgcagt tgatgaggct cttcatcacc catacttggc ttctcttcat gacatcaatg 
002941 aagaacccac ctgcccagca cctttcagct ttgattttga gcaaccatcc tttactgaag 
003001 aacatataaa agaactcatc tggagggaat ccttggcatt taatccggat cctccctact 
003061 aagagctcag gttcgttcta gagaaccaat gatctaaaat attgtagatg gctaattcta 
003121 gcatcctgca gagatttttt gaagacttca tatggatagt tttccagatt gactaattta 
003181 gaccctggga gaatgaatgt tcttttaaag ccaaacaaat gcctattcca ctgcgatttt 
003241 atactcgtaa tataccattg cataaaattc tgttcataac tcaagtttat gagacaaaac 
003301 tattctatac ctttttgcca caaatttcat gttttctgat aattctcaac agtcaatatg 
003361 ctcacttcac cattttgaat gttacctccc tgttaagatc tgctttgaag aattcaaatg 
003421 ctaatttgcc atacctgcac atttcaaaaa tgaaattcct catttaatct ctaacctttt 
003481 gcatttcttt tgccttgagt gcagagcaat ttatcaatgc tggcatctga agatcggtag 
003541 ctctagaaaa gccaaatccc cttgctttgt gcatctatta attttatgcc cacttgttgg 
003601 gcgaatgagc atggattatt gttatagtga caatttttct taaggcctgt ctaaagaaac 
003661 aacatttgta ttccttatca gatagcctga acttgggcct gtattatacc ggttgattgc 
003721 ataactgttc ttatgtatct aagcctgtaa ttgtcttc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BJ451074 baak32j13 629
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ898451 whthkles16l13 733
more... (Total Hit Count: 42 )
/rice/oryzabase