cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121176     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0112800 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 681645 -  683136  ( - );   1492(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 681645 -  681973 ( - );   329 (bp)
Exon 2 Location 682449 -  682592 ( - );   144 (bp)
Exon 3 Location 682681 -  682783 ( - );   103 (bp)
Exon 4 Location 682884 -  683136 ( - );   253 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0112800 Os08t0112800-01 215895 J023083C18 21012 LOC_Os08g02080.1 AK121176 40814 AP008214.2 255678087 BAF22748.1 113622803 NC_008401.2 297609017 NM_001067369.1 115474474 NP_001060834.1 115474475
Os08g0112800 Os08t0112800-01 215895 J023083C18 21012 LOC_Os08g02080.2 AK121176 40814 AP008214.2 255678087 BAF22748.1 113622803 NC_008401.2 297609017 NM_001067369.1 115474474 NP_001060834.1 115474475


Chromosome: 8 ,  position: 681,645 - 683,136 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aggtagaagc caaacgcgag gcgaaaccac cacacctcac cgtcgaatcg aatccaaggc 
000061 ggcggcggcg gcggcggcgg cggcggcgat ggggatccac gagcacgtcg aggggatcaa 
000121 ggcgcactgg gcgaagaact tctccttcct cgactacttc aagaaggtct acggccggga 
000181 caagcccctc cccaagtgga ccgatgccga cgtcgacgag ttcatcgcct ccgatcccgt 
000241 ctacggcccg caggtcaccc tcctcctcct ccttcccgca caatccgtct cctgctcgtc 
000301 cggccgcccg tctaaccacg cgaattttcc cgatcccccc tgtgtttttg cagctcaagg 
000361 cgatgaggga atccaggaag ttcgcgctcg gcggggctct cgtcggcggc gcgcacctcg 
000421 gcggcatcgc cctcaagtac tccaaggccc cgcacggtat caccaccaat cgcgacctat 
000481 ctagtaattt caacttgcgc tgtgattgcg cgtgcatccg gtgcctgatt tggttgggct 
000541 gcaggtgtcg tcctggccac cggcttcggg gcgatctgcg gcgccgtcgt cggatcggag 
000601 gtggcggagc actggtacca gctctacaag acggacaagc agggggccaa cctaaggttc 
000661 atctactggt gggaggacaa ggtcgcaggt atcataccac cttcttcgtc tcttgttctt 
000721 ctcattctca tgtgctttac ttgctctaat tcgatcaggc catttccttt gcaagtgaac 
000781 actacatcac aatgatgatt ccggtagttg atttccgatg taaaatttgt agtaattatg 
000841 aggtatcaat attgtgcccc tttagtgaat tgggaatatt agtttgcaat catgagatgg 
000901 tctataatac agttggaatg ggctaggaat atcgagtcgt gaatgcgagg tgtcgactct 
000961 atgctgtttg agtaacttag aaacgtttga agaatacaac gaagttgtgt gtcagttttt 
001021 ggtcgtggac agttgttaac acaactgatc aggataaagg gactgcatga tgttgttcca 
001081 ttgagctagc aagtaaatgc atcgcatttg aaggcctcct tctaaccgtg ttcgattttc 
001141 tttttgggtg cttttgtgaa caggaaacca gaaaagttga gtggtgtcta tctggtccag 
001201 cagcttggca agagtgatgt ccccccgctg ggatttttag ttgctcattc ctagtatttc 
001261 caaataaggt gtgtattggt tgtgacgatt acgcagatgg agtatgtttc cttttgctag 
001321 taccgtgagc tctgtctgtt cacagcctga acaacaactt ttgtgctctg aatggttcac 
001381 aaactaaatg ctgatcttta ccggtatctg ttgatctttg tccattaaag attactttgc 
001441 atattgtaag tactgcttta ccttgaagat aataaggcta cataacgtaa cc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
AK251799 FLbaf135g03 796 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ223745 whdl6j12 644
more... (Total Hit Count: 72 )
/rice/oryzabase