cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK104843     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0459600 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 22635204 -  22638667  ( + ) ;   3464(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22635204 -  22635413 ( + ) ;   210 (bp)
Exon 2 Location 22635527 -  22635667 ( + ) ;   141 (bp)
Exon 3 Location 22636398 -  22636528 ( + ) ;   131 (bp)
Exon 4 Location 22637525 -  22637707 ( + ) ;   183 (bp)
Exon 5 Location 22637802 -  22638667 ( + ) ;   866 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0459600 Os08t0459600-01 104814 001042G07 6302 LOC_Os08g35740.1 AK104843 2872 AK104843.1 32990052 BAG96990.1 215740834 NC_008401.2 297609017 NM_001068510.1 115476757 NP_001061975.1 115476758 Q6Z965 OPR7_ORYSJ
Os08g0459600 Os08t0459600-01 104814 001042G07 6302 LOC_Os08g35740.2 AK104843 2872 AK104843.1 32990052 BAG96990.1 215740834 NC_008401.2 297609017 NM_001068510.1 115476757 NP_001061975.1 115476758 Q6Z965 OPR7_ORYSJ


Chromosome: 8 ,  position: 22,635,204 - 22,638,667 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atttcgctca cctgttcccc tcctccgccc tctccccaac tcgccatttt ccccgtcttc 
000061 cacagtgaca accaccaccc cacgctttcc ccttcctcct cgcgatccag cagcgggaga 
000121 gatggatcgg ccgccgccgg atcagcagcg gcagaagcag gcgccgctct tctcgccgta 
000181 ccagatgccc cgcttccgcc tcaaccaccg gtgagccgct cgccgccccc cgcccccgtg 
000241 gtctggtctc gctgcgctcg ggattttcga ggtcttcttt tgcttacgtt tacggggtgt 
000301 ggtgtgcgtg gacgtggtgg cagggtggtg ctggcgccga tgacgcggtg cagggcgatc 
000361 ggcggggtgc ccggcccggc gctggcggag tactacgcgc agcggaccac ccagggtggc 
000421 ctgctcatct ccgagggcac cgtcgtctcg cccgctggcc cggggtaatc tcgtcgcttc 
000481 gccctcctcc cctttccgcg ctttcacgat ctgttggcac atgctttgat gctcctgcgc 
000541 tcgactagtt ttattgctgc taatattatc taaagaaaag tttactgcta aatctggcag 
000601 gagtggcatc agaacaaaat tgtcttttta ggatgatttg gtactggata tttggcaggg 
000661 tagtgttaag ttttcatcaa gtggggttgg aatattctta ttttttttat tagtgggtgg 
000721 cggttatggc caacacaaaa gagtattaag ctgtttgtat ttttgacatg ggtttatctt 
000781 tcacacaata ttttggatgg gcagtacaaa atgccaaatt agattcctcc tcttaaccct 
000841 gtctcaagag gagttgttgg agcatgctac ataggatgct atgatgaatg gccttatggt 
000901 cttagatagt gagatcaaaa ttgtaagtaa atttgggaga gatgcactga gttcacaagt 
000961 aatgttagtg tccgccgctg caaacttaag acatatccta gacacattcc tgaaaagtaa 
001021 aataagatat ccctcactgt ctatgatata ttgtcacgct ctatatgttt ggagttatgt 
001081 agacagtctt ctgatacccg gtactgatga acttgttgca agtttatgtc acttctgtac 
001141 tgtcatgtca taactcagaa tatgcatatt aagtagcgaa tgttgttatt gaaggtttcc 
001201 tcatgtccct gggatataca atcaagagca gactgatgca tggaagaagg tggtggatgc 
001261 tgttcatgcc aagggaggca tctttttctg ccagttatgg catgtaggca gagcttctca 
001321 ccaaggtatg ttcatagctt catagtatgt tagaatgata aagcagttcc actaaattaa 
001381 attaccaaaa gttgtactag ctatatatca ttgtcctgtg ccttggtaat tttagtactg 
001441 tctcctttga tttttataag gtgtatttta atttcaaaaa gtcttcaaga tagatctttg 
001501 accattgatt tctgatagac tgtatccttt acagctataa aacgcgtact gtgaaagcat 
001561 ttgaaatacg attctcttgg tataactata cacaataatg cacttgtaat ttgactattt 
001621 ctgaaaatcc tgccttatat aaatcaatgg agggatgctt tgtcatgtgg aaaaagggtg 
001681 tatttttgtc tgaatctgga gtaactctgt tccctgtttt tctcgagatt catttcttct 
001741 caaagggtaa gggaagaaag gttgaattaa attatgctta gtcaatgcaa taccaaaaac 
001801 ctaggtagtt ttttttggct gggctcagtg atcatggata ggaatgaggg gtggtctgtt 
001861 tcagtaattg cctgtgttca ccttgtttgt cccagaccct ctatgcctat ccctctctct 
001921 tgctgtattt tgttctttta acctcttctt ccttttatgt aatttgaatt tcatttctgg 
001981 taatggaaat gggggccatg tagcccttga tcaaaaaaaa aaaagcacta ccaaaaacag 
002041 tcacactgta ttgtgtaatg agatagatga aatatgttat ttcccttttc atttccttct 
002101 tcaacaaatt atggcctaat tgcaactcta tgtctgtacc tatgctctgt tcatgttgtt 
002161 acttgttact agggacatcc agtagttgta cttatttttc tttatcagag ttcatatgat 
002221 taataatatg cactgattca aatgtgttag tcttcacttc aagctttttt tttaataaca 
002281 aattcacttc aaatgttgac caatgccttt tcacctttca gtataccagc caaacggtgc 
002341 tgcaccaata tcctcaactg ataagccaat atcagcaaga tggagaatac tgatgcctga 
002401 tggctcctat ggcaagtatc ctaaacctag gcgcctggca gcatcggaaa tacctgaaat 
002461 tgtcgaacaa tatcgtcaag ccgccattaa tgccattgaa gcaggtaaag atgcaacaca 
002521 taaatttgca atcagtccaa ccatgggcca tcggaaatct caccgatttt ctgatatgga 
002581 gatgaatcac atgtacaggt tttgatggca ttgagatcca tggtgctcat ggctatatca 
002641 ttgatcaatt cctaaaggat ggaatcaatg accgcactga cgagtatggt ggctcacttt 
002701 ccaaccgctg ccggttccta cttgaggtaa ctagggctgt ggtttctgcc attggagcag 
002761 accgagtcgc ggtgaggata tcaccagcca ttgatcacct tgacgcctat gattcagacc 
002821 ccattaagct cggcatggcc gttgttgagc ggctgaatgc tctccagcag cagtcagggc 
002881 ggctcgccta cctccacgtc acgcagccac ggtacaccgc ctacgggcag accgagtctg 
002941 ggcagcatgg cagtgccgag gaggagagcc gcctgatgcg caccctccgg ggcacgtacc 
003001 agggcacatt catgtgcagt ggcggctaca cgcgggagct tgggttggaa gcagtggaga 
003061 gcggcgatgc cgacctggtg tcgtacgggc ggctcttcat atcaaacccg gacctggtcg 
003121 agcggttcag gctgaacgcc gggctgaaca agtacgtgcg taagacattc tacacgcccg 
003181 atcctgtcgt gggttacacg gactatccgt tcctcggaca gcctaagtcg cggatgtaaa 
003241 tgtactgcgg gataagtaaa tcaaggatac gattgtgtat tgtaaggaaa ataaagggca 
003301 acggtgaggt gatttagctt atttttggga cctaatttga cggtaattta ttctttcacc 
003361 aaatctgata tgatccattg ctgattcagt agctactcta gcctatgtaa accttgggtc 
003421 atcagcacag attgtatcta tatgtgtatt gcataatgtt tcat

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
BY847848 bart49a12 203 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ657622 whhg11k02 652
more... (Total Hit Count: 18 )
/rice/oryzabase