cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069122     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0112700 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 678358 -  680703  ( + ) ;   2346(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 678358 -  678799 ( + ) ;   442 (bp)
Exon 2 Location 678893 -  678968 ( + ) ;   76 (bp)
Exon 3 Location 679390 -  679451 ( + ) ;   62 (bp)
Exon 4 Location 679851 -  679953 ( + ) ;   103 (bp)
Exon 5 Location 680027 -  680066 ( + ) ;   40 (bp)
Exon 6 Location 680156 -  680199 ( + ) ;   44 (bp)
Exon 7 Location 680309 -  680703 ( + ) ;   395 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0112700 Os08t0112700-01 J023004P21 204811 J023004P21 4341 LOC_Os08g02070.1 AK069122 22946 AP008214.2 255678087 BAF22747.1 113622802 NC_008401.2 297609017 NM_001067368.1 115474472 NP_001060833.1 115474473 Q0J8G8 MAD26_ORYSJ


Chromosome: 8 ,  position: 678,358 - 680,703 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aagcaagaga tagggataag gggaagagga ggaagaagga ggaggtgtag ggagaaaccg 
000061 gagcaacctc gaagctagtc caaactagtg ggaggttgtc tttccggcaa gccggagccc 
000121 ggagctatcg atcatcaagc tttctacccc gaccgacgag gaagaagacg actgatcaat 
000181 tgatcaaacc gatctctcca tagctaggta gacaggagga gaggaggaag aagaggggga 
000241 gaggagactt atcttgatcg atggcgcgag gcaaggtgca gctccgtcgc atcgagaacc 
000301 cggttcaccg tcaggtcacc ttctgcaagc gccgtgccgg cctgctgaag aaggccaggg 
000361 agctctccat cctctgcgag gccgacatcg gcatcatcat cttctccgcc cacggcaagc 
000421 tctacgacct cgccaccacc gggtaccttc agcttcttct ccatcaaatc aaattaaaaa 
000481 aggttttgag cttagctctg atataccatg gaggttaatt gatttctttg aacagaacca 
000541 tggaggagct gatcgagagg tacaagagtg ctagtggcga acaggccaac gcctgcggcg 
000601 accagagaat ggttagtgat tataactctt tccttttgtt tcagttcttt ttctgtttct 
000661 gtttcagttg ttatccttta ctgtttccat ttcagttgtt agctagcccc cactccaatt 
000721 tctaatcagt gcctagtttc atatgtaaat taagcatagg gagttgctag tgatgaaaaa 
000781 aaaggtctgg aaatagagct agttgtatcc gaaaaatctg agctgctatt atgttacaga 
000841 tgattaaacc tggaactgaa aactctaggc tctagcccaa aactagttgg aatacatcaa 
000901 atagacaata gtataaagta taaacacctg atctacacat cttaggtggc aagtagttgc 
000961 aacttcgtaa tatttcctcc attttacctc atgctctcct atcacttaaa actggtgcat 
001021 gtatgtcatc aggacccaaa acaggaggca atggtgctca aacaagaaat caatctactg 
001081 cagaagggcc tgaggtaaaa actattcaca gattgcatta cagattggta taattccttt 
001141 ctagaagaaa aaatagataa aatcatacaa tcttccagca aaaatatcca agtttgattt 
001201 cataaacaaa catagctttc tatgtccaat tagtaagttc acatcgcaac aagtatgcaa 
001261 tgctatccag acttggtcca cactcagtat cattcactag atcactgcaa gtaacataac 
001321 catacatgga agtgttacaa aaaaattgtt gaactcacac taagtaaaag agcttcattc 
001381 accaaaccga actgtttact cgagaaattg atgtaataag aatacatcat atattattta 
001441 cattataatg agttcagaca cttaactctt gacaaaatta aaacccatgg caggtacatc 
001501 tatgggaaca gggcaaatga acacatgact gttgaagagc tgaatgccct agagaggtac 
001561 ttagagatat ggatgtacaa cattcgctcc gcaaaggtaa ctcattgaaa gtcttcagat 
001621 ttcataaaga acaaattgtt caagagatct aaaatcttta atctaacaga tgcagataat 
001681 gatccaagag atccaagcac taaagagcaa ggcaagccaa actatcttgt ttaactctat 
001741 aaatatccaa taaaatgatt aataactaac taaaagcata gtttatctct aatcgtgcag 
001801 gaaggcatgt tgaaagctgc taacgaaatt ctccaagaaa aggtactggc agtccattga 
001861 catagaactg tgcacttgcc agttttaaaa atgaagataa aatgttgcag cgtgccgtaa 
001921 actgatgtca gatatgtgct tttgcttgca gatagtagaa cagaatggtc tgatcgacgt 
001981 aggcatgatg gtagcagatc aacagaatgg gcattttagt acagtcccac tgttagaaga 
002041 gatcactaac ccactgacta tactgagtgg ctattctact tgtaggggct cggagatggg 
002101 ctattccttc taacactaat aatggcctgg gggatacttg tgttcattac tagtgtgtaa 
002161 tatggttaat aatgcttgtg ttgctgtttg ctttgctatt ctgatgtacc ttatttagac 
002221 aagttcccgc aggaagtgtc ttttagtatt gtatttgtct tgggctgtgg tgctttgttt 
002281 ttccctaaag aactcttgag gagctctgtt gttgaaccat ttcaagtaat tgagactatt 
002341 gtttcc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ838858 whatlal19n18 729
more... (Total Hit Count: 2 )
/rice/oryzabase