cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072260     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0336500 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 13482642 -  13486273  ( + ) ;   3632(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13482642 -  13486273 ( + ) ;   3632 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0336500 Os06t0336500-01 J023005B09 208248 J023005B09 10641 LOC_Os06g22980.1 AK072260 24142 AP008212.2 255676632 BAF19471.1 113595597 NC_008399.2 297606578 NM_001064092.1 115467915 NP_001057557.1 115467916 Q5Z6E5 CSLD5_ORYSJ


Chromosome: 6 ,  position: 13,482,642 - 13,486,273 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cttcgcagca atggcgagag ccgcatgggg gctccgagaa gctagctagc taggacgaac 
000061 gcgaatgtcc tcgtcgtcgg cggcacccag gcagccaccc gagacaggtt tacgcggcgg 
000121 acggcgagcc tagcggcctc ccgcggccgc agcctctcca acccacgacc acgacgacca 
000181 cctcgacgtc gcgctggagt acccgtcctt cgccgccatg tcggtcgact acgccaacta 
000241 caccgtcctc atgccgccca ccccggacaa ccagccgtcc gggggtgccc cgcccgcggc 
000301 gccgtccgcc ggtggcgcta ggccgggcga tctgccgctc ccgccctatg gctcgtcgtc 
000361 ctcctccagg ctcgtcaacc ggcgcggtgg cggcgacgac ggcgccaaga tggaccggcg 
000421 gctgtcgacg gcgcgcgtcc cggcgccgtc cagcaacaag tcgctgctgg tgcgcagcca 
000481 gaccggtgac ttcgaccaca accggtggct gttcgagacc aagggcacgt acggcatcgg 
000541 gaacgcctac tggccccagg acaacgtgta cggcgacgac ggcggcggcg gcgccgtcaa 
000601 gatggaggac ctcgtcgaga agccgtggaa gccgctgagc cgcaaggtgc ccatccctcc 
000661 gggcatcctc agcccctaca ggctgctggt gttggtgcgg ttcgtggcgc tcttcctctt 
000721 cttggtgtgg cgcgtcacca accctaacat ggacgcgctc tggctgtggg ggatctccat 
000781 cgtgtgcgag ttttggttcg ccttctcctg gctgctcgac cagatgccca agctgaaccc 
000841 gatcaaccgc gccgccgacc tcgccgcgct caaggagaag ttcgagtcgc cgtcgccgac 
000901 gaacccgacg gggcgctccg acctgccggg gcttgacgtc ttcatctcca ccgccgaccc 
000961 ctacaaggag ccgacgctgg tgacggccaa cacgctcctc tccatcctcg ccaccgagta 
001021 ccccgtggag aagctgttcg tctacatctc cgacgacggc ggcgcgctgc tgaccttcga 
001081 gtccatggcg gaggcgtgcg cgttcgccaa ggtgtgggtg cccttctgcc gcaagcacag 
001141 catcgagccg cgcaacccgg attcctactt cacgcagaag ggcgacccga ccaagggcaa 
001201 gaagcggccg gacttcgtca aggaccgccg ctggatcaag cgcgagtacg acgagttcaa 
001261 gatccgcgtg aacagcctcc ccgacctcat ccgccgccgc gccaacgccc tgaacgcccg 
001321 cgagcgcaag ctggcgcgcg acaagcaggc cgccggcgac gccgacgcac tcgcctccgt 
001381 gaaggccgcc acctggatgg ccgacggcac gcactggccg ggcacctggc tggacccgtc 
001441 ccccgaccac gccaagggcg accacgccag catcgtgcag gtgatgatca agaacccgca 
001501 ccacgacgtg gtgtacggcg aggccggcga ccacccgtac ctggacatga ccgacgtgga 
001561 catgcgcatc ccgatgttcg cctacctgtc gcgggagaag cgcgccgggt acgaccacaa 
001621 caagaaggcc ggcgccatga acgccatggt gcgcgcgtcg gcgatcctct ccaatggccc 
001681 cttcatgctc aacttcgact gcgaccacta catctacaac tgccaggcca tccgcgaggc 
001741 catgtgctac atgctcgacc gcggcggcga ccgcatctgc tacatccagt tcccgcagcg 
001801 gttcgagggg atcgacccct ccgaccgcta cgccaaccac aacaccgtct tcttcgacgg 
001861 caacatgcgc gcgctcgacg gcctccaggg ccccatgtac gtcggcacgg gctgcctctt 
001921 ccgccgctac gccatctacg gcttcaaccc gccgcgcgcc atcgagtacc gcggcaccta 
001981 cggccagacc aaggtgccca tcgacccgcg acaaggcagc gaagccatgc ccggcgccgg 
002041 cggcggccgc agcggcggcg gcagcgtggg cggcgaccac gagctgcagg cgctgtcgac 
002101 ggcgcacccg gaccacgagg cgccgcagaa gttcggcaag tccaagatgt tcatcgagtc 
002161 catcgcggtg gccgagtacc aggggcggcc gctgcaggac cacccgtccg tcctgaacgg 
002221 tcgccccccc ggcgcgctgc tgatgccgcg gccgcctctg gacgcggcga cggtggcgga 
002281 gtcggtgtcg gtgatctcgt gctggtacga ggacaacacg gagtgggggc agcgcgtggg 
002341 gtggatctac gggtcggtga cggaggacgt ggtgaccggg taccggatgc acaaccgcgg 
002401 gtggcggtcg gtgtactgca tcacccggcg cgacgcgttc cgcgggacgg cgccgatcaa 
002461 cctgacggac aggctgcacc aggtgctccg gtgggcgacg gggtcggtgg agatcttctt 
002521 ctccaagaac aacgcggtgc tggcgtccag gcggctcaag ttcctgcagc ggatggcgta 
002581 cctcaacgtt gggatctacc ccttcacgtc gctcttcctc atcatgtact gcctcctccc 
002641 ggcgctgtcg ctcttctcgg ggcagttcat cgtggcgacg ctggacccga cgttcctctc 
002701 ctacctgctg ctcatcacca tcaccctcat gctgctctgc ctgctggagg tgaagtggtc 
002761 cgggatcggg ctggaggagt ggtggcggaa cgagcagttc tgggtgatcg gcggcacgtc 
002821 ggcgcacctg gcggcggtgc tgcagggcct gctcaaggtg gtggccggga tcgagatctc 
002881 cttcacgctc acggccaagg cggcggcgga ggacgacgac gaccccttcg ccgagctcta 
002941 cctcatcaag tggacgtcgc tcttcatccc gccgctcgcc gtcatcggga tcaacatcat 
003001 cgcgctcgtc gtcggcgtgt cgcggacggt gtacgcggag atcccgcagt acagcaagct 
003061 gctcggcggc ggcttcttca gcttctgggt gctcgcgcac tactacccgt tcgccaaggg 
003121 cctcatgggc cgccgcggcc ggacgcccac catcgtctac gtctgggccg gcctcatctc 
003181 catcaccgtc tctctcctct ggatcaccat tagccccccg gatgatagcg tcgcgcaggg 
003241 cggcatcgac gtgtgacttt tcgtgacaca caccatcacc catcactggt actaagatcg 
003301 atcgagatat gcatggccag acatacaaga aattgccaag agatttatat gtgccaattg 
003361 catgaaccgt gcactacatg catcgatcag atttgcactg tacgttcaag atgttctggt 
003421 tagtgtgtcg tgttggagta ctgatttggt ttttgtaaga aagaatttgc tgggtttatt 
003481 agcatgtacg tcctgtgtta cttaaggatg ccagagcagg gtccattttg tacaagagtt 
003541 tcccatgtgt gtaccaatat acggacaggg cagtactgac tgactgtaca tgattttctg 
003601 tatttgggtt ctggtaaaat tacctattct tg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BJ481183 bah59a20 585
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ800757 whsct20n03 614
more... (Total Hit Count: 29 )
/rice/oryzabase