cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069317     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0712700 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 31050629 -  31054998  ( - );   4370(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 31050629 -  31051117 ( - );   489 (bp)
Exon 2 Location 31051241 -  31051285 ( - );   45 (bp)
Exon 3 Location 31053404 -  31053445 ( - );   42 (bp)
Exon 4 Location 31053894 -  31053991 ( - );   98 (bp)
Exon 5 Location 31054161 -  31054224 ( - );   64 (bp)
Exon 6 Location 31054429 -  31054495 ( - );   67 (bp)
Exon 7 Location 31054597 -  31054998 ( - );   402 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0712700 Os06t0712700-01 205017 J023014M24 4525 LOC_Os06g49840.1 AK069317 38742 AP008212.2 255676632 BAF20474.1 113596600 NC_008399.2 297606578 NM_001065095.1 115469921 NP_001058560.1 115469922 Q944S9 MAD16_ORYSJ
Os06g0712700 Os06t0712700-01 205017 J023014M24 4525 LOC_Os06g49840.2 AK069317 38742 AP008212.2 255676632 BAF20474.1 113596600 NC_008399.2 297606578 NM_001065095.1 115469921 NP_001058560.1 115469922 Q944S9 MAD16_ORYSJ


Chromosome: 6 ,  position: 31,050,629 - 31,054,998 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gagttgggaa tccgttgctg tcgtacgtct cgtctatggc gtgctgtatg tcctctcctt 
000061 ctttcttcct ttccaaataa gcactcctct tcttcctcct cctcctcctc cgcctcctct 
000121 tctcattccc aactcatcga tccatcagta gctagctagc tagctagcta gctgcattgt 
000181 ccggcgagag agatagctgc tgcagggggc ggccatgggg aggggcaaga tcgagatcaa 
000241 gcggatcgag aacgcgacca acaggcaggt gacctactcg aagcgccgca cggggatcat 
000301 gaagaaggcc agggagctca ccgtgctctg cgacgcccag gtcgccatca tcatgttctc 
000361 ctccaccggc aagtaccacg agttctgcag cccttccacc gagtctgtat ctccatctcc 
000421 acttcgactc tatgatcttc tccatcctga ttatactata tatataactg catcatatcg 
000481 atcttaattg catcctgctg cagcatcaag gggatctttg accgctacca gcaagccatc 
000541 ggcaccagcc tttggatcga gcagtatgag gttgatttgt ttaatttctt cctttcttcc 
000601 cctccgctag ctgcaaccaa gctgctcact tcgattctct ccttatgatt tgttttctca 
000661 tcttttgctc gattcgtctt ctcaattttc actccagttt ctttccttta attctatgtc 
000721 ccaactctct tctgctcgtt aattggtttg gtttggtttg ttttcatcca tcagaatatg 
000781 cagcgcacgc tgagccatct caaggacatc aaccgcaacc tgcgcaccga gatcaggcca 
000841 gcacaaattt caccccttta attactttcc tctcttctcc ttaattaatc cctcttagta 
000901 tatagttact gggggatttt agcttgaaca agagatccaa atttacaacg tttttcaaga 
000961 tatgtactgc tggatctgaa tataaacaac catacgtgtg tgcaggcaaa ggatgggaga 
001021 agatctggac gggctggagt tcgacgagct gcgcggtctt gagcaaaatg tcgatgccgc 
001081 cctcaaggag gttcgccaca ggaaggcatg cacgcacgca cgccctaatt aaactacgaa 
001141 ccctaatttg ctcaatacta aaacgtcgtt caattcctta attcaagggt ggtagatcct 
001201 tgtattttgt gcacactaga tctacggttc atgatcagat ccgtgcatat ttcatgcttc 
001261 tcgctacaga tctacgagtt tcttgaaccc ttcttggctt cttgcatgtg tggaaattat 
001321 attgatggtt tttaatttgg cctcggttgc ttgctcgtat taaacaagat aattttaagg 
001381 tttatgcttt atagaaacat aatttatgtg tactattgtt ttatcttaca actagtagga 
001441 tgtatgctca ttgatctatt ggactgtaac atattaaact ttctgcttca tgtatcctag 
001501 ccttttaatt tgtttcagtt ttctcatgat taattcggtt ttaatttctg cagtatcatg 
001561 tgatcaccac acagactgaa acctacaaga aaaaggtcag gaataagcca tgcccatttt 
001621 ctcagtattt gtttctggtt aaatttatat atatatatat atatatatat atatatatat 
001681 atatatatat atatatatat accaccaatt ttattccttc ctcttgaaac tgttggctat 
001741 aggtgtacat ctactgtgga ttttattcct tcccttggaa gctgttgact atgtgtgcat 
001801 ctcttgtgga tatataggcc ggatttaatc aatccattat cttaaaaaaa atactgccaa 
001861 tattatgcct aataatgcag caatattagt atatatatgt atgttcttct ggtgcagtaa 
001921 taagggtata tctagatatc tgcacaagcc tatataagtg tatatttatc ttccccaatt 
001981 ccttacttta attgcttcac ttttgtggcc accatcactg cttaaatttg cttagtttgg 
002041 ccaataagtt cgcacttgca gtgtcgtcta tgttcacatg tctttctgaa gagctatatg 
002101 ctatcccttt gattgtacgt tgttcacatt tttcctgacg atattaagtt cctccgggta 
002161 aaatatacat tgatcccgtg aactaaattg cactcaccca ataacctgca ttttgcctta 
002221 ttgcgtgcta atttagccat atacatagcc atggatctcc cagtttctgt acttgaacag 
002281 tcgaagctag ctaagctagc ccttgaatcg atcaaaagcc aaaataaaag atctgacaag 
002341 caccatgacg cctctcaacc gaaacatgca tgctaatgta cagtgtgcat taccatgcgt 
002401 gtctgtgcat ttccatacta tctacacatc aatatatttg atcgaggcta cctgatctac 
002461 acatctagtc taagctatac acatagccat cagtagatgt acatcgatgt taattggagc 
002521 atgcattgtc atgtgcattc ctatacatta catgatgaac aacgcacgca atataatgcg 
002581 atctgcgatg cagttttctc tgtctttttt gcaagctaga actcatgaca aacagcaaag 
002641 gacagtagta tgaattgggc atgtatctgc atatatatgc gtatatgtat ctcctgttaa 
002701 gcaaacaact aagccaggat cggtagctat ataaactagc tgtacctaga gacgatgaag 
002761 catgcatgct tattttggtc ccccggctat ttaggagagt agcatgtcaa acacggattt 
002821 ttatgagaga ttgcatcgcg gcgtgatacc ttttggtaga taagggacgg cattgaggct 
002881 ttatgatttg caagaatttg gaaaccaaac cattacggcc gctggcttac tgaatcttta 
002941 gtggggtgta ctactaatta attactcagc ttgaacaacc gagcaaaagc gaatactttt 
003001 gactttacat tcaatcgact ttaataggga gtactctttg ttcattgttt tgtagtttta 
003061 cctgcggtta gctggtcaga attaaacata tatatatata tatatatata tatatatata 
003121 tatatatata tatatatgta gctgaataag taattcattg catcgagggg attgttaacc 
003181 attcatgcat atctaactgt gttgtcggct gaggtgaaaa ttaaccagtt caagcatgca 
003241 tgttggcata tagtataagc tagcacatca caaattcaca atcaccttca agtgtttaat 
003301 ttcgctgcat tagctactcc tttggtcttg ttacgtgaga gagctgacag agagtagtgt 
003361 ataaactctg aacaaagaac tgcactttga tatggagcta gctagaagat gactttgaat 
003421 ctgtatatat atctttgtca ttgtgatatg ggagaggata acttgcttaa attttatgtg 
003481 agtgactgtt catagaaata aacttgacga ttgtttcttg tgtgctatag catgctgtcc 
003541 gaagatgcaa acatgtatat atacacattg cagtgacact ctacttttac ttgcacacat 
003601 atgctggacc ctgtgtctat acatgcatgc acatgatata atttgtctgt ctatagctaa 
003661 tagagattgg tttctacatt aattgatccg gtgtgtgcat gcatataatg caggtgaagc 
003721 actcctacga ggcgtacgag actctgcagc aggagctggt aacctatcaa gcattttttt 
003781 ttcagttata gccagaaaat tatttgttaa ttagtttctc caatgcaggc tagctaattt 
003841 gattgaactc tactgttgga tgaatgtttg aattaattca ggggttgcgc gaggagccgg 
003901 cgttcgggtt cgtggacaac accggcggcg ggtgggacgg cggcgccggc gccggcgcgg 
003961 cggcggacat gttcgccttc cgcgtggtgc ccagccagcc caacctgcac ggcatggcct 
004021 acggcggcaa ccacgacctg cgcctcggtt gatatatcat cgccgccgcc gccgccgccg 
004081 ccggcggcct gctcgtcgcc ggccggccgg ccgccggaca ccgtatcatc gctcgatcta 
004141 gataacaagc cgacgaataa attgcagtgc tcgtgttact tacctgcatg cgcatgcatt 
004201 attatcgatc aacgcaagaa cttcatttca tttaccaaac cacttgatgt gtgctatgat 
004261 ccagcggtta aaccgtgtgt tgtctcttga cattttgtac cagttactga tgatgttgta 
004321 ttatgtatgc gtggtgtgca actgtgcttg gataatttca cacttatttg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ262998 rwhh10h04 329
more... (Total Hit Count: 2 )
/rice/oryzabase