cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065478     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0154200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 2779789 -  2784227  ( + ) ;   4439(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2779789 -  2782050 ( + ) ;   2262 (bp)
Exon 2 Location 2782599 -  2782692 ( + ) ;   94 (bp)
Exon 3 Location 2782764 -  2783419 ( + ) ;   656 (bp)
Exon 4 Location 2783519 -  2784227 ( + ) ;   709 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os06g0154200 Os06t0154200-01 J013024O22 200844 J013024O22 800 LOC_Os06g06050.1 AK065478 16483 AP008212.2 255676632 BAH93336.1 255676730 NC_008399.2 297606578 NM_001187679.1 297724488 NP_001174608.1 297724489 Q5VMP0 MAX2_ORYSJ


Chromosome: 6 ,  position: 2,779,789 - 2,784,227 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gacgtcgccc atggcggaag aggaggaggt ggaggagggg aggtcctcgt cgtcggcgat 
000061 actggacctg ccggagccgc tgctgctgca catcctgagc ttcctgacgg acgtgaggtc 
000121 tcggcacagg gcggcgctgg cgtgcgggag gatgcgggcg gcggagcggg cgacgaggtc 
000181 ggagctctcg ctgaggggcg acccgaggtc gccggggttc ctgttcctct cgcacgcgtt 
000241 ccgcttcccg gcgctggaac acctcgacct ctcgctcgtc tcgccgtggg ggcatccgct 
000301 tctctcctcc gtgccgccct gcggcggcgg cggcggcggc gcgccctcgg cgtcgtcgtc 
000361 gtcggggatg aacgtgtacc accccgaggc gatctccgag cagaacgcct tcatcgccgc 
000421 ccgcctcgcg ggctgcttcc cggcggtgac ctcgctcgcc gtctactgcc gcgaccccac 
000481 cacgctcgcc aacctcaccc cgcactggca ggcctccctc cgccgcgtca agctcgtgcg 
000541 ctggcaccag cgcccgccca ccctccccga cggcgcggat ctcgagccgc tgctggagac 
000601 ctgcgccgcg ctccgggagc tcgacctgtc ggagttctac tgctggaccg aggacgtcgt 
000661 gagggcgctc accacgcacc cttccgccac cgcggcgctc acccacctcg acctcggcct 
000721 cgccgccgcc accgacggct tcaaatcctc cgagcttggg ccaatcgcgg cctcctgccc 
000781 caacctccgc aagctcgtgg cgccatgctt gttcaaccca cggttcagcg attgcgtcgg 
000841 cgacgacgcg ctgctctcgc tggccaccag ctgcccgcgg ctgaccgtct tgcggctcag 
000901 cgagccgttc gaggctgcgg ccaacatcca gagggaggag gcggccatca ccgttgcggg 
000961 gctagtcgcc ttcttcgcgg cgctccccgc gctggaggat ttcaccatgg atctccagca 
001021 caatgtgctg gaggccgcgc ccgcgatgga ggcgcttgcc cgaaggtgcc cgcggatcaa 
001081 gttcttgacc ctgggttcct tccaggggct gtgtaaggcc tcttggttgc atcttgatgg 
001141 tgttgcggtg tgcggtgggc tggagtcact ttacatgaag aattgccagg atctcacgga 
001201 tgccagcctt gcggcaattg gccgtgggtg ccggaggctt gctaagttcg gcatccatgg 
001261 ctgtgacctt gtcacttcgg ctgggatcag gaggcttgca ttcacgcttc ggcctactct 
001321 caaggaagtc actgtcttgc actgccggct tctgcacact gcagaatgtc tcactgctct 
001381 aagtccgatc cgtgatcgca ttgaaagtct tgagatcaac tgtgtctgga acacaaccga 
001441 acaaccctgc agtgttgcaa atggcaccac caccgaatgc gatcctgagg atgatgagct 
001501 tggtgaagtg tacgagtctg cagccaagaa atgtaggtac atggaatttg atgatcttgg 
001561 aagctgggag atgctcaggt cactctccct atggttctct gctggccagc ttctctctcc 
001621 gctcatttct gctggtctcg atagctgtcc cgtgcttgag gagatctcaa ttaaggtgga 
001681 gggtgattgc cggacatgcc cacgacctgc tccaagaaca atttttggct taagtgatct 
001741 tgcaggcttc ccagtattag ccaagatgaa attggacctc agtgaagctg tgggttatgc 
001801 acttactgca ccaacagggc agatggatct ttcactatgg gagcgatttt atttgcatgg 
001861 tatcgaatca ctgcagactt tgtatgaatt ggactactgg ccgccccaag acaaggatgt 
001921 gcaccaccgg agcctgacat tgccagccgt gggattgatc caacgctgcg ttggactcag 
001981 gaagcttttc atccatggca ccacacatga gcacttcatg accttcttcc tttcaattcc 
002041 aaacttgcgg gacatgcagt tgcgggagga ctattatcca gccccagaga atgatctgat 
002101 gttcacagag atgcgggctg aatcttggct taggtttgag gtgcaactga acagccggca 
002161 aattgatgat tagttatgtg ggcacaaaat ggtttgaagc tgaatacaga gatttatctg 
002221 gatggtgcca ttgctccact gtgcaatggc aggggattcc tggtgagttg gttatgatta 
002281 tgggtggagt cgtgtgtatt gctgcagtgc cattgaggag agtagtatac tggcagcact 
002341 tggatctgtc agcaaagtaa ccttctccag ttgctttttt accccctttt tgatgtaata 
002401 agagagttgg gtcggaaatg agatatttgc aggagataag attataaatt aggcttcatg 
002461 gaaaattttc caagaaaaaa aaacattttg tttttaagat ggtctgagtt gtgaacaccg 
002521 gcaagagtaa ttggcaaatt ggcatggttc tagcggtttg taacatttga actctgtaaa 
002581 caaaagaaaa acgccactcg cttttcttat gccctttgct tcatgggtga aagtggctca 
002641 tctaatattg gtcagtgttt tactgttttc aatggatggg caacggagtt cagtactact 
002701 gcgataggaa actattttga tgtgtacata acagctctat taatccaaaa ttatgtgcct 
002761 ttgctctttg agtttatttc tgtccctttc cttttccatt tcatgcacag gcttggtgac 
002821 aaatgggatg gcgtgtgcag atgtgcaagc cagttttgca tgtcattatc gggcatgttg 
002881 agttgcaaca ccggctacaa caaggtttac tttaatacac agcagtaagg atttaatctg 
002941 atagaatgtt gaaaggtttt ctctttttta tgcaggattg aaagctgctt tagtttccaa 
003001 ggaacaacca atcagttcca tcagaactga ctaccaccat ttgctgattc gttctctgca 
003061 gtgatcccca atggagacct ggcctttgct tcatctcatc ctcaaactgt agcatgacaa 
003121 gaaagacgtg cggaacaaga tcagcatcag aacatgacaa aaagattttc gcactagaag 
003181 ccggtttatc caattcctct gcttgcctct tccattcagc tagttaagat aatgcgagat 
003241 cactggtttt gtcaaagcaa atccagacga ttcttggtgc catggaaaaa gaagtcgtcc 
003301 atgagtgaga gagctctctt gtcctaatcc atcagcaagg gcaataatgc ttttttgatt 
003361 aagcagctgg aggcctcaca aaataatgct taagcaagta ctactacagg attaaaagct 
003421 ggcctctaga aggagtagat taggtagagg agaagcttct cctttcctct tttgccacgt 
003481 tgaggcttat tgctcacatg attgtcaatc aaccacgtca cacaagcaca tacacacact 
003541 tattatttgc tcatagtttt agttatttat caacatttgg cagatatgtg ttggaaattc 
003601 agatgctcct tgatgccatt ttatcttgct ggtacatctg cataactcgc tcattactat 
003661 ctgttgcaat attattatac atttggatat ttaatgtgct gatcgcttct tgctacctat 
003721 ctaatttcag aatgtcttga aagcaaagct ggtgacagga gagatgtcat atgagcaggc 
003781 agtcagttgc agccttgtgg ttgcacctcc ctttcctgct gtcctctttt ttttgttttc 
003841 cctggtttct cttcatcaga attaaagcag atatttttgt ggcggccgtg gatttccatt 
003901 catctgatga tcagctagta atattctgca agtgccttcc gatagaattg agcgatgatt 
003961 ctgaggtcag atactcatca gatgctcgaa ggataagtgg gtttcagacg atgctgcaaa 
004021 agatattagc cggcgagtga ggtgaggcta ctagcctact aggcttatcg ccttgtataa 
004081 aactaaagga gtcagtacag agacatcagg taaagtcagc atatgcagct atccatctat 
004141 gcatgcatgc accaactgca aagtaaaggt aaaagtgaaa gctttgtctt ccaggtgtat 
004201 ggaagaaaat tatccttgtg atggttatgc aactcactct tttgtttgca cccagatatg 
004261 tcatattggc tttttcacca tggtgtcaag gttgatgtga atgtgaatgt gattctacta 
004321 atttgaggtc atgtagagta attaagtaag caaatggagc ccgtcatgtc gtcatgcact 
004381 gacaaggata tagtcctatg gacctctatt ttgattaatt ggtggagaaa attcagagg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ919384 whthkles7o02 537
more... (Total Hit Count: 10 )
/rice/oryzabase