cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK062542     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0208800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 5560449 -  5561931  ( + ) ;   1483(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5560449 -  5560506 ( + ) ;   58 (bp)
Exon 2 Location 5560594 -  5560755 ( + ) ;   162 (bp)
Exon 3 Location 5560834 -  5560865 ( + ) ;   32 (bp)
Exon 4 Location 5561590 -  5561931 ( + ) ;   342 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0208800 Os06t0208800-01 001104G03 105489 001104G03 9856 LOC_Os06g10660.1 AK062542 40178 AP008212.2 255676632 BAF19019.1 113595145 NC_008399.2 297606578 NM_001063640.1 115467011 NP_001057105.1 115467012


Chromosome: 6 ,  position: 5,560,449 - 5,561,931 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cctatgcact aactgctgga aactgtgtgc agtgcagctg tggaccagga gatctcaagt 
000061 aatgctgcct tttccttgtt caatgcaatt ctattgcttc tacatgtttt ggaatatagt 
000121 cctcattttc tctcttcttc tgcagattgt attgcacacc agcttcatta acagcatcat 
000181 gttcaagtat gcagtgcccc aatagcaacc tcatgcttgg gaatgtgact gcccaatcca 
000241 ccagtggtgg atgcaatgtc tcatcttgca gctatgctgg acttgttaat ggaaccattg 
000301 ccacgtcgta agtaaaaaat aagtctaata aacctttctt ttttatattc ttacaataga 
000361 tgattcttac ctaacttatg cgcaggctct cctctggtct tcaacccaca tgcccaggta 
000421 attacagtgt tatcttcatg atatctcttc ctatgtgctg catacggaat atgcaacact 
000481 atcacttatt tgctctatcc atctagaccc gtcttcttga aaagatgcac ttggtattgt 
000541 ctgatcaaaa agtgaacaca taatgatact aaagaagaaa agaagctcaa attaaattaa 
000601 aaatgttcaa ttatgcatca ctggcattct ttaaataata gtcatttgat caaggatcat 
000661 atgtaaaatc caagtaatta agtgcgttat gttcatttaa agttaaatgt gaagagtgaa 
000721 agtgctgtag tagctattaa aagcatgttt ctggaatact agtcgcaaac aatgaaacaa 
000781 agccacatca aggtttccgt tcatgatgta tcattgaatg aggaacttat gattttatcc 
000841 gagtcactga atgcattata ttcatttcaa gaaaaaaggt gtaggacagt aggagtggcg 
000901 gcaatttttc tgtttcttat tgaaaacatg tttctggcat atttatcggc attgcaattt 
000961 taagccaaac cacatcagtc tttctggagt ctgatcaaat cacaccaaaa ccagaataat 
001021 aaaggtttaa accaacttgg tattctaaaa ttccttcact tgcctgttgg ccatgcatca 
001081 tcaattccta tatttatgat ctgatctata tattgcttct cactcaaacc tctcaacaca 
001141 ggaccacatc agttcccccc actcagggcg acaccaattg cagtaaacca aggatcatac 
001201 cttgctccat cacctgcacc aggagctggg gaggctggcg gcgatattcc gggcttccct 
001261 gggagctcca acgtttctcc tgcaaacggc ccttctggga gtgtctccca agcggcttcg 
001321 gtgaatcggc cacaccaaat cgtcgccctc attctttctg tagccttgta cttccagatg 
001381 tgaattcgtg tgcagagtat tgttgttgtt gctggctgtg tgtattgaac agggggccct 
001441 catttgggcc tggtggaacc ctaatgtcaa ggtcctttct atc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BJ453673 baak44b02 614
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ225554 whdl22k18 550
more... (Total Hit Count: 6 )
/rice/oryzabase