cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061048     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0127000 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 1423823 -  1426395  ( + ) ;   2573(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1423823 -  1423945 ( + ) ;   123 (bp)
Exon 2 Location 1424827 -  1425034 ( + ) ;   208 (bp)
Exon 3 Location 1425129 -  1425203 ( + ) ;   75 (bp)
Exon 4 Location 1425301 -  1425375 ( + ) ;   75 (bp)
Exon 5 Location 1425494 -  1425574 ( + ) ;   81 (bp)
Exon 6 Location 1425666 -  1425740 ( + ) ;   75 (bp)
Exon 7 Location 1425829 -  1426002 ( + ) ;   174 (bp)
Exon 8 Location 1426105 -  1426395 ( + ) ;   291 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0127000 Os06t0127000-01 103449 006205F12 8461 LOC_Os06g03660.1 AK061048 10546 AK061048.1 32971066 BAG87696.1 215686411 NC_008399.2 297606578 NM_001063195.1 115466121 NP_001056660.2 297605099 Q5VRJ8 PX115_ORYSJ
Os06g0127000 Os06t0127000-01 103449 006205F12 8461 LOC_Os06g03660.2 AK061048 10546 AK061048.1 32971066 BAG87696.1 215686411 NC_008399.2 297606578 NM_001063195.1 115466121 NP_001056660.2 297605099 Q5VRJ8 PX115_ORYSJ


Chromosome: 6 ,  position: 1,423,823 - 1,426,395 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atctcctctc ctaataaatc acaacttcgc ttctcggttg gcagcagcga tttcatccaa 
000061 gcaccacgcc gccgccgccg tcgaagccga tctcctgcgc gcggagcgga tcgcctctgt 
000121 caggtacgac ccgccctctt cctcctcccc tgctaatttc tcttcgcttc gtcggccacg 
000181 ccacgccacg cgcgttcttg ccaaccttgg tctcgcgagc agcgaggatg gggaggagga 
000241 gaggaattcc tctcgaattg atcgccggtt gatgcgcccg gcttgttcct cttctgcggc 
000301 ctaattttgt acgagttcgg gggttgttta ggtggagaaa tttggtacag attcgatttt 
000361 acccttttgg tcttcttctt gtgcgtccat gccgccgttc atcagctacg gtgacctttt 
000421 ccagtctagc ttttggaagg ggccgagctc ccagccatgg attagctatc atcaacttag 
000481 tcaagtgact tgtcgagttg tcggggtgta gttcactgtc taggtgttct caaaatcacc 
000541 accttttata gtggcacgcc tcttaaactg tatccatgca atcaaattta aatcacatgt 
000601 cattgagtta acctttatgc tactttacag gccactgtaa attttaccga gtttatgaaa 
000661 ttgtgaatat gtgctaaagg ttatatgagc tccttttttt ttagcagagc ctgctgttta 
000721 aattatagtc ttataggtag cctgatgagt gatgacaaac cttattctgc tactgccaat 
000781 ttttccgaga ttctttaaac ctttagctgt tagccctgtt acattgcttt cggttttggc 
000841 aatttcttcg ttatcactat gcaacagaga tcacgactga gcctatatta tttttggaat 
000901 taatttgttt cttttcctgc ttcaattgtg tccctgattc tgtcacggta atgctcatct 
000961 attcactgct ataattgtga cccaacatct tatcaccgat gcagtcacca gctatacagt 
001021 atgagttcac tggagagtgc aagagcagat cttgctctgc ttattttata cctaaacaag 
001081 gctgaagcaa gagataagat ctgtagagct atacaatatg gctcgaaatt tgtgagtaat 
001141 ggacaaccag ggcctgcaca gaatgttgac aagtcgacta gtctagctcg taaagttttc 
001201 cgacttttta aggtaaagtt ttaatccttg tccgcagtag atattgcaaa tgagaagcta 
001261 ttttttcata ccttgacatg atctgtggca ccacattatt ttgcagtttg ttaatgatct 
001321 gcatgctttg attagtcctc ctgccaaagg aactccacta cccctgatct tacttggaaa 
001381 ggtatgttga agcttgtatt gccttgtagg aactctgaga acctaaagat acgttttttc 
001441 acttctcatt gtatcttttt gctttgtgcc atccacagtc gaagaatgca ctgctatcaa 
001501 ctttcctctt tctggaccaa attgtatggg ctggaaggac aggaatatac aaggtttgat 
001561 tttctcttca catcattact gatatacata agcaccatac agcatatggt tttatcatac 
001621 ctagatgttg acagtagaaa ttaatggtag gtaatctaat tgtttgtaca gaacaaggag 
001681 cgagcagaat tcctcagcaa gatagcattt tattgcttcc tgggttctaa cacatgtact 
001741 agtattattg aggtatgaga cttcagactg tagaatctat ttaatcctgc ccctgatatt 
001801 attacaatca agagaatacc atctgactag tatttcatta taggtagccg agcttcagcg 
001861 gctatccaag tcgatgaaga aactagagaa ggagcttaaa caccaggagc tgttaaaggt 
001921 accgtcttat atgatcatag ctcaatgtaa ccacaatttt cacatcttgc ttttgatgac 
001981 ataatggcgt gtgatggtat tggcagaacg agcaatacca gatgaaactg cagaagtgca 
002041 acgagaggcg tctcgctctc atcaaatcga gcctcgacat agttgttgct atagggctgc 
002101 ttcaactggc tcccaagaaa gtgactccgc gtgtgacagg ggcgtttgga tttgctagct 
002161 cactcattgc ttgctatcag gtaccttaac tctcacatat tgtcatgtgg actatcgtct 
002221 gtttagagtt agcaactgca aaacctgaaa ctttcatttt gatctgctta tttcctctgc 
002281 agttgctccc agccccagcc aaatccaagt gatccacctg aaggggtgtc agtgggcagt 
002341 tccaatgttg caaccagtaa gaaataaaag tggagctgct tgattgactc atgtggactt 
002401 gaaaatcctt tgtgggttat ggttaatatg atgatctagt ggattgctgc agctgtaatt 
002461 ttaaggtgca gtacttgtga caaaaaataa gaaacttagc atgggaaaaa tgttgcattg 
002521 tttgccaatg gtttagtgtt gggactagct aataagaaca ttgccattat atc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252535 FLbaf153g17 1237 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ897564 whthkles13n15 715
more... (Total Hit Count: 65 )
/rice/oryzabase