cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243380     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0245300 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 8875676 -  8877614  ( - );   1939(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 8875676 -  8876067 ( - );   392 (bp)
Exon 2 Location 8876975 -  8877077 ( - );   103 (bp)
Exon 3 Location 8877376 -  8877614 ( - );   239 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0245300 Os05t0245300-01 J100063B05 302741 J100063B05 LOC_Os05g15630.1 AK243380 AK243380.1 116012745 BAH01572.1 215769343 NC_008398.2 297605017 NM_001061549.1 115462828 NP_001055014.1 115462829 Q84UT5 BLE3_ORYSJ


Chromosome: 5 ,  position: 8,875,676 - 8,877,614 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atgcctattt gtttctgatc cctagcttta aaggctgaag ctgctgtcag ctgtgttcgc 
000061 gcagcagcaa gcacaggcag catcatggcg aaggtgcacc ggctgatgaa cgccgtgctc 
000121 cggctcgccg ctgcggcggc tgctgcaacg gcggcggtcg tcatggtgac gagccgtgag 
000181 accaccagct tcttcggcat tcagatggag gccaagtact cctacacccc atcttttatg 
000241 taagtagaac atattacata tatatacatg ttgttgatta actttgcctc tgtacaaagt 
000301 tgtcaaaatc tcaattctgt catatgattt atgactttac gattctattt aaggtgcctg 
000361 attctcctat cctacatata gaatctacga ttttgtgatt tttacgtata tgattctatg 
000421 attatatatg gtcctactta gaacatccga tttcgatttg agatcacgat ttagcaacat 
000481 tgctccaatg ccatcgtcgg ttgagttctc tgcacgtact gttgtgttct gtggcagctt 
000541 cttcgtggtg gcgtatgccg tggcggccgc gtatagcctg ctcgtactgg ccgtgccggc 
000601 agggagtgcc ctctccagat tggcgctaac aacagatgtg gtactgtctc ctctctgttt 
000661 tgtaaattta cttacaatat tgtttgattc cctcgtttca tcgattcatt ctaaacagca 
000721 agataatgaa tgtccttctt ttcggcattg gactttccaa tcaattaatt gatggtaaaa 
000781 ctcgtaaaga tcaactttgc gaaaattcca ttgtatccta ggagcttgta actcataact 
000841 cattagaaaa acaaaaatga gattctatat aataagttgt tgatattcaa taactcgtag 
000901 aaaacaatca caaaatctaa acatttatta gtttatccat aaggcgatcc cgcaatacat 
000961 tatagccatt ttctaatcga aatgatcaag aaagatgatt cagtgttctc tactagtagt 
001021 attatactac tagtaaaaat gatctgaacc gttcgttacc aagagtaaat cggtaattta 
001081 ctaatacagt tattacgggt aactttgtta tttatggttt tccccggcta aatcgatatg 
001141 tggtcattca ttgtgttggt attgctcata ttctatctaa aaagctaaaa aaagaagaaa 
001201 aaaaaaggtt tacccactac taaatgacga ttatgtccct tcacactttt tttttttttg 
001261 acaataatga tcctcgacat ttctactgcc actatctaag gtgataatat aaatagatac 
001321 aaacccttcg atcaaatgag atcaacagtt tataaattgt tttctactac aagtagaaag 
001381 caccatacta ggctcacatt attccgtctt ttaaaatgac cagatttatt tatactaaat 
001441 tgcacggatg atcctaaagc ttgtcgcatg catggtatca tctggtaaaa aaaaagattg 
001501 tagaaccagt tttcgatcaa tatttctccg tccgtccatg tacgcaggtg ttggggatgg 
001561 tgctcgccgg tgccgtggcc tccgccggcg ccatatcgga catcgcgaag aacggcaact 
001621 cgcacgccgg gtggctgccg gtgtgcgggc agatacacgc ctactgcaac cacgtcatgg 
001681 cggcgctcat cgccggcttc gtcgcgctgg ccgtccactt cgtcgtcgtc atgtactccc 
001741 tccacattgt caccgatgtc atttgcccct gccattagca gagtctatct atatatatag 
001801 tccatagtag cagtatatat ataggtcgtg atatatactt ccatcaccaa aaattcgggt 
001861 acgtatatac cattttattt tctctatatc tatgtctcaa tttgttaaag ttatgtttca 
001921 gatggcaact acattgtga

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
AK250003 FLbaf65l02 857 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ587064 rwhsc12n14 471
more... (Total Hit Count: 8 )
/rice/oryzabase