cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK072330     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0753500 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 33346871 -  33352886  ( - );   6016(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33346871 -  33347303 ( - );   433 (bp)
Exon 2 Location 33347411 -  33348266 ( - );   856 (bp)
Exon 3 Location 33348353 -  33348515 ( - );   163 (bp)
Exon 4 Location 33349886 -  33349961 ( - );   76 (bp)
Exon 5 Location 33350038 -  33350154 ( - );   117 (bp)
Exon 6 Location 33350275 -  33350439 ( - );   165 (bp)
Exon 7 Location 33350523 -  33350613 ( - );   91 (bp)
Exon 8 Location 33351247 -  33351331 ( - );   85 (bp)
Exon 9 Location 33351436 -  33351618 ( - );   183 (bp)
Exon 10 Location 33352028 -  33352084 ( - );   57 (bp)
Exon 11 Location 33352171 -  33352886 ( - );   716 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0753500 Os01t0753500-01 J023039P13 208333 J023039P13 10685 LOC_Os01g54990.1 AK072330 5243 AP008207.2 255672756 BAF06188.1 113533805 NC_008394.4 297598437 NM_001050809.1 115439988 NP_001044274.1 115439989 Q5JMM1 ARFC_ORYSJ


Chromosome: 1 ,  position: 33,346,871 - 33,352,886 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ctcgctgact cgctccagcc agcagcagca gcagcagcca ctgctcgcga cggaacagac 
000061 gacaccacca cgacgcccgc gtcataaagg catgggcatt gtcgcaggct agccacagcg 
000121 acggggtagc agcagcatca gcagcagcag cggcaacagc gaccggcatt gatagcggca 
000181 gctgaggaag gaagagggcg cgcggtcgcc gcaggagcgg agcagggggg gcatgggctg 
000241 ggcgggctga gcgctgagca ggagatggct ggagagcgac gccctcggag gcattaatgg 
000301 cgtcgtccgc atcctcctcc tcctccccat cctcgcggcc gccgctgatg gctctcccct 
000361 ctttttaccg gcccccttgg ccgtccgaga ggggcggcga gcagcgagcc accgactgtt 
000421 gggccggatc cccagcggcg ggaggcggcc gggcgcgtgc caccgccatg ggcatcgacc 
000481 tcaacaacac cgcgagcggc ggcgaggagg acgcgccggc gccggggccg gtgtgccggg 
000541 atctgtggca cgcgtgcgct gggccggtgg tgtcgctgcc gcggcggggc agcgcggtcg 
000601 tgtacctgcc gcaggggcac ctctccgcgg ccggcgccgg cggcgggatc cgcggggagg 
000661 tggcggttgc cctccctccc cacgtggcgt gccgcgtcgt ggacgtcgag ctatgcgtga 
000721 gtgaaccgct gtcgctcgtg gtagggtttt cgctgtgagg ccgcgcgtgg tgggctgcat 
000781 ttacatgctg gactttgtgc aggcggatgc agcgacggac gaggtgtacg cgcgactggc 
000841 gctgcgggcg gagggcgagg tgcaacgctg cttcaattat cttattgatt catgtgcttc 
000901 cgggattggg gattggatga gattcttggg ggcgtcaaat gttggttgcc tgcatcctct 
000961 tttcagcttt gggcgtggca taagctgcaa tgtgatgggt gttgaatgag ctttgatttt 
001021 tattggatgt ctaaaaatag acattgttgg ttcattctaa ttttagtgag ccacataatt 
001081 tgggacttac tagatctact tggccagctt gatatagtat gagtgccgtt ttctctgcac 
001141 aatgtagctt catttagcac atctatcatg cctctaattt gtatattgta ccgatacgat 
001201 gaattgtttt ggcataacaa attctattaa cagatttgat ttatcaatgg tacatttggt 
001261 tggttcaggt atttgagagg aacttgcatg gtggtggaat cgaaagggag gatgacatgg 
001321 aggatggtga tgaggaaagg aagtccagga tgctgcacat gttctgcaaa acactaacgg 
001381 cctctgatac aagcacacat ggagggttct ctgttcctcg tcgggctgct gaggattgct 
001441 ttccacctct ggtgatgaga ttagaagttt gatttgtttc ctattgactc ttcaagtgac 
001501 tgcttgtctt gtgatgtaac tctaacgaag tttgttttct ttcgtgcctt aataggacca 
001561 caaacagcta aggccttctc aagagcttgt tgccaaggat ttgcatggag caaagtggag 
001621 gttccgccat atttatagag gtgacatccg agtacttgat aagggatatg caatgccctt 
001681 gttacacaat ctatttattt aattgctagt aaatgtttga tttgatacct ttgtatcgga 
001741 aacttgtacg tcatactcat gtttgatgat cgggcatata cagagcattg ctaaattatg 
001801 tgtgactgtt ttagctttga aagaggtcag gaagtatttt agtcaatgct acaaaatata 
001861 tggcaggtgt agcttttcaa ctctttgaat gtttgacatt ctaagtggtc agtagttttg 
001921 cctgtctgaa ctgcgcgttc agtcgtcttt gccattccct aggatgcaaa ttatttcctt 
001981 cctagttcat cttctgatac aatttatgtt attcttttgt gacttccatc actttgttat 
002041 atatggtgtg ttatctctgc agtgaaaatt acttctgtta ataaaactgt acaattttgc 
002101 tcagatagta gtgtccttga aacagtggat agaggatgct ctccaatctt attgttgtcc 
002161 aagccaatat ctccattttg attacaaggg aaatgcacaa gttatcttgt agttatagca 
002221 tgtgatggag caaagtatga cattatgaat ttttaacatt cttttcattc caggtcaacc 
002281 tcgcaggcat cttttaacaa ctggatggag ctcctttgtc aataaaaaga aactggtctc 
002341 aggggacgcg gtgttatttc tccggtaatc acttgatcca ggtgttaacc ataaagctaa 
002401 tgctttcttg tctatatttt ctaacgaagc attttaagcg tttgcagggg tgatgatggt 
002461 gagctaagat tgggtgttcg aagagctact cagcttaaaa atgaagcgat tttcaaagct 
002521 tttagtagcg aaagttcaaa gatgcgcaca ctgtcggctg tggctgattc cttgaaacat 
002581 ggaagtgttt ttcacatttg ttacaaccca aggtctgctg aataaaacat atagtgtttc 
002641 attttgtgtg gtccaactca atacaatgtc attttctctg gggcagttgg actatatatc 
002701 cattcacata ttgtaatcat tggactttgt agggctactg cttctgagta cgttgttcca 
002761 tattggaagt tcgtgaaaag cttcaaccat ccagtttgta ttggaatgag gttcaagttt 
002821 cattttgaga gtgaagatgt taatgagagg tttgcatttt tcagttgaac tatctttttt 
002881 tgtttttgca taatactttc ttgggtctta ctatctgtgt tgtaggcgtt ctggaatgat 
002941 tgccggtgtt agtgaagtag accccatcag atggcctggt tcaaagtgga gaagccttct 
003001 ggtatgcatt tgagctgctt ttttattaag cttgttgact acggaacatt aacttttggc 
003061 tacctgccaa gtctttgaaa catatattag ggcaccacat atagtcaatt tcagttactg 
003121 ttttgtctat cggattaaat gtgaggttat ttcacacatt aaaataaatt catcaagtta 
003181 gctgaagtgc tgaactcttg aatatgggtg caacatcctt cttgtcaaac tcaaattttg 
003241 aatccaagcc tgatcttgtg gagtagagaa attacttagg atgttctatg atcttttgtt 
003301 tgtgagtaaa tatgtgcaaa cattaataaa tgctcaagtg agaactgaga agttgtcgaa 
003361 ataaattcaa tacgtaataa aaatggtgtg ctataaaaat gattagatga tttgtatcac 
003421 tttgattcct acattttgca gtctcttgct tagcccacat tagtggttgg gacaaatcat 
003481 attagtcaat tgggatgata tatcaagaat aaaatgccaa cccatctaaa gggaatcaga 
003541 acaaatggtc ttgtaagtcc ttgaggcacc ttaagacaaa tggtcctcgc atgcatttct 
003601 ttttcacact tctgatccca agattcccat gtaggtttac cattagcaga tgtcagatag 
003661 agaattgttt ctgctggagt aaaatttctt aagtatctag gcttttgtag tttgagaact 
003721 ttgtagttcc tgcatttcta ttaatagaaa tggggagttt ggccccttga taaaaaataa 
003781 gatagagaat tgtttcacgc atatttggat tgaaaaggac aataatgatg taggatgtgt 
003841 acaatctgtt tatccgtttt gctgtttata acatctggtt ggcagctaaa aaaaactctc 
003901 ttgatgagga atttcgttgg tcttctgcca gttgccaatg tttgtcgccc tatgccgccc 
003961 aatgaagctc attgagcaca caggagaaac aaaacagtga agagaatact agaggcatgt 
004021 tattattgct tgctaatatg ggctggaact tgtttgcttt cataatgtaa gctgtaagga 
004081 tcatcaaagt tgtgcaaaac caattattta gaggatttac taactgtaac catatacatt 
004141 ttaatgctat caacaccttt tatgatggca tccatgtctg tttaggtggg gctaaatatt 
004201 ttttattgga ttggaccaag accacattat caaggcccca taggaagcct aacagcttag 
004261 aatttttata gattttgatt tgtccattat aaatcgttta tggtgaatct attgtcaata 
004321 ttacccaaat tcgctaatgt tagcaatttg atttgctgtc ttttcataca ggttcgatgg 
004381 gaggatgcta ctgactgcaa cagccaaaat agagtatctc catgggagat tgagatagtt 
004441 ggtggttcaa tctctgttgc tcattctctg tcggcatcca gttctaaaag aaccaaatta 
004501 tgccctcagg gcaatttgga cgtgccagct ctgtgtgagt tccaagagca cgaggtcaat 
004561 acttggatct ataaattctt taaccctata tgcttattgg tttttgtgtt aatcctgtag 
004621 atggaaatgg tcgtccagac tcggtggaaa ctgaaaagtt ccccagggtc ttgcaaggtc 
004681 aagaattgat gggttctagg acccatcgtg ctacttgttc tcctcagtca atcgacatta 
004741 caaaaagtaa gtcttttgat gcttggagat tccttactga tacacgaagc tgcatgttgg 
004801 gcagttcaac aagcagactt ccagtgcagt actctggcta tacccaccaa tctgtaagct 
004861 tcggtgaatc tattggattc ccagaggtct tgcaaggtca agaaatttct cagacagttc 
004921 ctccgtttca aggaatgttg cctgatgcat gttcagcgaa aagcagatat gaattaaaga 
004981 attatgtgtg caccccagct accatgaatg gactatcatc tgcaaatgaa ggatattgtc 
005041 tctccctgtc aactgtgcca ccttctccac cttccagtct tatgttatac caaacagggg 
005101 taccacagct tgaattggca agcaagaaca atgacaaaag tggaaatgac agccaaccag 
005161 ccttgcgaca gcacaagttg ctcagtgaaa ctagctggga ccagtttaaa attggaaagg 
005221 cttcaacacc tgggaatgct actaagcctg gtaatggtgg aagggaggtt gacagaacta 
005281 gttgccgcct ttttggtttt tccttgaccg agaagattat cccaacagac aaagatggtg 
005341 aaaaggaagt gagttatgaa actgattgcc aaaatccacg gatgctagac ttgtttgggt 
005401 acaattgcag tacgcctggt gctcttcatg ccctttgtgc tgctcctttg ggaatatgat 
005461 gctacttgag taactggtat gctctagttc ttccttactg ctgaaaattc acttctcctg 
005521 tacctttgga cctcgtactc taccattatc caaaagctaa tttggtcact gacatttaca 
005581 cagggaggga tacgtacatg tggagacgca gccactccac gcttcatccc agatgtaaac 
005641 ggcatcggtc tggttatggt cccaccgttc ctgatgcttt gcatgtaggt attgctgcct 
005701 cacgcctgaa tacctacgtg cggtcaggcg aataaagcga ctcgattgta tgtttgactg 
005761 cagctctagc tgtcgagtcg gaagggcgat gatgtttatc gtcgttaatg taccatcggc 
005821 accctgttta tgcagaaatg tggacctaat tattatgaac ttatttcctt agttctatgt 
005881 atggttagct tctgatctag acctagttat gagcctattt cagaagtgct atgtatggtt 
005941 tgcttgtcaa catttgtttc tgtatcggta caaatcacta tgtttgtatg tttattatgc 
006001 acttcttttg tgtttt

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ651943 whem7c12 643 view details
/rice/oryzabase