cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121190     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0343400 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 16179278 -  16181645  ( + ) ;   2368(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 16179278 -  16179703 ( + ) ;   426 (bp)
Exon 2 Location 16179817 -  16179981 ( + ) ;   165 (bp)
Exon 3 Location 16180080 -  16180540 ( + ) ;   461 (bp)
Exon 4 Location 16180640 -  16180816 ( + ) ;   177 (bp)
Exon 5 Location 16180914 -  16181645 ( + ) ;   732 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0343400 Os05t0343400-01 J023086B03 215909 J023086B03 21017 LOC_Os05g27730.1 AK121190 36773 AP008211.2 255675924 BAF17166.1 113578803 NC_008398.2 297605017 NM_001061787.1 115463304 NP_001055252.1 115463305


Chromosome: 5 ,  position: 16,179,278 - 16,181,645 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actcccgtct cgtcgtctcg ttctcgtctc cgatcactct cctcctcatc ttcgtcacgg 
000061 tctcctcgct tcgctagctc gcttgcttgc tggctgagct gtggtacgct cgccatggcg 
000121 tcctcgacgg gggggttgga ccacgggttc acgttcacgc cgccgccgtt catcacgtcg 
000181 ttcaccgagc tgctgtcggg gggcggtggg gacctgctcg gcgccggcgg tgaggagcgc 
000241 tcgccgaggg ggttctccag aggcggagcg agggtgggcg gcggggtgcc caagttcaag 
000301 tccgcgcagc cgccgagcct gccgctctcg ccgccgccgg tgtcgccgtc gtcctacttc 
000361 gccatcccgc cggggctcag ccccaccgag ctgctcgact cccccgtcct cctcagctcc 
000421 tcccatgtgc gttccgcgtg acacaccttc atcttcttct tctaccttta gtgcgcaatt 
000481 gctgtgtagt gtggtgctga tgatgatcca tggcgtttgt gcgtgtttgt gcttttcaga 
000541 tcttggcgtc cccgaccacc ggtgcaatcc cggctcagag gtacgactgg aaggccagcg 
000601 ccgatctcat cgcttctcag caagatgaca gccgcggcga cttctccttc cacaccaact 
000661 ccgacgccat ggccgcgcaa ccggcctctt tcccttcctt caaggtacgt acaaatgctt 
000721 cagctcatct agctcaaccc aagctgaata aactgttgac agtctagctc accttggttc 
000781 atgtacgctt gtgctggagc aggagcaaga gcagcaagtg gtcgagtcga gcaagaacgg 
000841 cgccgccgcc gcgtcgagca acaagagcgg cggcggcggg aacaacaagc tggaggacgg 
000901 gtacaactgg aggaagtacg ggcagaagca ggtgaagggg agcgagaacc cgaggagcta 
000961 ctacaagtgc acctacaacg gctgctccat gaagaagaag gtggagcgct cgctcgccga 
001021 cggccgcatc acccagatcg tctacaaggg cgcacacaac caccccaagc cgctctccac 
001081 ccgccgcaac gcctcctcct gcgccaccgc cgccgcctgc gccgacgacc tcgcggcgcc 
001141 cggcgcgggc gcggaccagt actccgccgc gacgcccgag aactcctccg tcacgttcgg 
001201 cgacgacgag gccgacaacg catcgcaccg cagcgagggc gacgagcccg aagccaagcg 
001261 ctggtaagcc tcacatcatc actcaaatca gcaatcgaag cgtaatatct ccatgcgtgt 
001321 gcgtgtgttc ttcttgggtc tcatggatgt catggttttc aggaaggagg atgctgacaa 
001381 cgagggcagc tccggcggca tgggcggcgg cgccggcggc aagccggtgc gcgagccgag 
001441 gcttgtggtg cagacgctga gcgacatcga catcctcgac gacggcttcc ggtggaggaa 
001501 gtacggccag aaggtcgtca agggcaaccc caacccaagg taatcaatca atcaagctga 
001561 tcaaaatccg tcgattagtc gattaatcat atctgttctt gcgtctctaa taatcaaatc 
001621 tgttcttgaa tcgcaggagc tactacaagt gcacgacggt gggctgcccg gtgcggaagc 
001681 acgtggagcg ggcgtcgcac gacacgcgcg ccgtgatcac cacctacgag ggcaagcaca 
001741 accacgacgt cccggtcggc cgcggcggcg gcggcggacg cgccccggcg ccggcgccgc 
001801 cgacgtcggg ggcgatccgg ccgtcggccg tcgccgccgc ccagcagggg ccctacaccc 
001861 tcgagatgct ccccaacccc gccggcctct acggcggcta cggcgccggc gccggcggcg 
001921 ccgcgttccc gcgcaccaag gacgagcggc gggacgacct gttcgtcgag tcgctcctct 
001981 gctagtcgag ccgagccgag ccgagctgag ctgggcccca catccccctg ctcgccacgt 
002041 ggcgtatttt cgcctcgccg tatacgtacg gccgtatagc gtacgtatac acgctcgcac 
002101 gccctgccca acacggcaat acacacatac atactctcgt acacacgtag tagcatacat 
002161 atacagtata gtaggtggta gtggtagcta gctagggagt gagatccaat ttgttgattc 
002221 gttgcaggcc actgccacgt gggccacacc ggaaacagta cacgcgtata caccacactt 
002281 gggatacgcg tacgtacgca catgtacacg tagttttgtg cctttgtaac tgctgagaga 
002341 caggtcaaat aagactgatg aatttttc

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ941672 whchan39m01 702
more... (Total Hit Count: 17 )
/rice/oryzabase