cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070894     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0883100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 40051024 -  40053574  ( - );   2551(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 40051024 -  40051512 ( - );   489 (bp)
Exon 2 Location 40052219 -  40052263 ( - );   45 (bp)
Exon 3 Location 40052381 -  40052410 ( - );   30 (bp)
Exon 4 Location 40052530 -  40052629 ( - );   100 (bp)
Exon 5 Location 40052745 -  40052806 ( - );   62 (bp)
Exon 6 Location 40052888 -  40052954 ( - );   67 (bp)
Exon 7 Location 40053312 -  40053574 ( - );   263 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0883100 Os01t0883100-01 206735 J023072H23 6020 LOC_Os01g66030.1 AK070894 8448 AK070894.1 32980917 BAG92196.1 215678541 NC_008394.4 297598437 NM_001051547.1 115441464 NP_001045012.1 115441465 Q40702 MADS2_ORYSJ
Os01g0883100 Os01t0883100-01 206735 J023072H23 6020 LOC_Os01g66030.2 AK070894 8448 AK070894.1 32980917 BAG92196.1 215678541 NC_008394.4 297598437 NM_001051547.1 115441464 NP_001045012.1 115441465 Q40702 MADS2_ORYSJ


Chromosome: 1 ,  position: 40,051,024 - 40,053,574 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gttgttgttg ttgttgttgg cttcgctttg ctgctaagct agctggagga aggaggagga 
000061 ggaggaggag gcgggatggg gcgcgggaag atcgagatca agaggatcga gaactccacc 
000121 aaccgccagg tgaccttctc caagcgcagg agcgggatcc tcaagaaggc ccgcgagatc 
000181 agcgtcctgt gcgacgccga ggtcggcgtc gtcatcttct ccagcgccgg caagctctac 
000241 gactactgct cccccaagac ctcgtgcgtc cccccctctt ctcctccccc tggttctttt 
000301 gcacataata tttttcagtg tactctttgt ctagatgata aggtatatat gcaagaatcg 
000361 ttttgatgca acaactaggt tgaagatttt tactctactc cccaaaaaaa gggaaaaggg 
000421 agatttttac tctaccaact tgccaggacc ggaactgtgt ttttgtattg gttaaagtca 
000481 gtttcttttg caggaaatgc catgtcctta ctctttttcc taaaatcggt tttgagttat 
000541 gctgatatag tatcttgaac cactcgcatc tgttgcactg acatgcttga ttaaccttcc 
000601 aatggtggga catgtataag gctatcaaga atcttggaga agtaccagac caattccgga 
000661 aagatactgt gggatgagaa gcacaaggta tttcagagct acaatagtac actgttttta 
000721 gatccggaaa gagtgatttc tgactgatga gcacatgaat cttttcagag ccttagcgcg 
000781 gagattgatc gaatcaagaa agagaacgat aatatgcaga ttgagctcag gtaaattctt 
000841 cagcctttaa atagggttgt ttccttttca tttggacttc agtattactg tattggtatc 
000901 tgcggagatt acagtcaaac ccgttgtcat ggattcatgg tacaggcact tgaaaggtga 
000961 agatctaaac tctctgcagc ccaaagagct catcatgatt gaggaggcac ttgacaatgg 
001021 gatagtgaac gtgaatgata aactggtaaa tatgtctttt gcatttgcct tctcaattct 
001081 tttaaccttt cagcagttga ccatataggt attagcactc atgaaatttc tttgctactg 
001141 atgttgcttt gtttgttggt atagatggac cactgggaaa ggcacgtgag aactgtatgt 
001201 atgacctagt ttggattatt gaatatatta ctatttctca tgtgttttgt tagccacggg 
001261 aggtttcctt ttatattttg gtctcattat tgttatcttg atcaaccgaa ggataagatg 
001321 ctggaagacg agaacaagct gctggctttt aaactggtgg gttaatttgc agagtgatct 
001381 ggatttttga acttcaaata aattgtctgc ataccatttc acttatgttc agcatgtaag 
001441 ctatgtttgc acattgtttt agtaacctct tttgatttag attataacta tggattatct 
001501 acttgattat aagaaaaaat taaatatttt tagaaataaa ctcaatagat cgttagtggt 
001561 ctaagcaatg gagtagaaga atgttttctg aagcatgggg caaataatct gttttgataa 
001621 tccaacgagt aatctgaaaa gaagaggagt tttagctatc ccatcgtatg aatgctttcg 
001681 tcataatttc tatgaccatt tttttttcag tgataactta atgttctata aggaacccaa 
001741 atgaaattcc taaggtgtta aaagcaccca aggatctttc catcagttat ggaagctggc 
001801 aatattaagc aatcagagga tttaaatgct ttgcatatcc tgatttctat cacacattac 
001861 tcattttcaa caatgaattg aattctgctt taccttgtac tagtataata ctgccacagc 
001921 ccacataagg aaatcaacta ctccttacct aagccacagc ccacataagg aagtataaat 
001981 tagacttgca gtgcctgcaa gatgtggtag tttatcatat actctcttac ctaagccatt 
002041 ttttttcatc cttctcatcc agcaccagca agatatagcg ctgagcggga gcatgaggga 
002101 tcttgagctt gggtaccatc cagacaggga ctttgcggcc cagatgccga tcaccttccg 
002161 cgtgcagccc agccacccca acctgcagga gaacaattaa gctgctaggt tgccccgcca 
002221 cttcgatcag ttatctcatc cactgatcca ccactggatt gaatgtccta gtgcattgtc 
002281 aactgtatcc ctgttttcat gtctgtttcg atgaactatt gagcatgtca tatgtgagtt 
002341 gctttgtgtg ccaatatata gtctgtctct agtacaagct ctgtgcttgc cattctgcct 
002401 cgctgtagat agcaccagca atggagctag ctcagatatc agtaacttcg tgcaagctgc 
002461 aaggtatgct tgtgttatca ccgcatttgt cagatggtga atagtagttt gtgattgtaa 
002521 caaacaattt atgcaagctt ggtttcatgc t

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ655500 whgc2g15 714
more... (Total Hit Count: 97 )
/rice/oryzabase