cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK062179     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0552300 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 27575367 -  27577866  ( - );   2500(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27575367 -  27575807 ( - );   441 (bp)
Exon 2 Location 27576899 -  27577866 ( - );   968 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0552300 Os05t0552300-02 001046D07 105094 001046D07 578 LOC_Os05g47890.1 AK062179 14525 AP008211.2 255675924 BAF18168.1 113579805 NC_008398.2 297605017 NM_001062789.1 115465308 NP_001056254.1 115465309 Q6L4F8 GBLPB_ORYSJ


Chromosome: 5 ,  position: 27,575,367 - 27,577,866 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctctcctagc cttcccctcc tccgccgccg ccatctgccg tcgagagccc cggttgccca 
000061 cccccgcggc gacgatggcg ggccaggagt cgctcaccct ggcgggcgtc ctgcgcggcc 
000121 acaacgacat ggtgacggcg atcgcggcgc cgattgacaa ctcgcccttc atcgtctcct 
000181 cctcccgcga caagtcgctg ctggtgtggg acatcaccaa cccgtccacc gccgtggcca 
000241 cggatcccga ggcggccccg ccggagtacg gcgtctcgta ccgccgcctc accggccact 
000301 cccacttcgt ccaggacgtc gtcctcagct ccgacggcca gttcgcgctc tcgggatcct 
000361 gggacggcga gctccgcctc tgggacctag ccaccggccg caccacccgc cgcttcgtcg 
000421 gccacaccaa ggacgtcctc tccgtcgcct tctccgtcga caaccgccag atcgtctccg 
000481 cggcgcgcga caacaccatc aagctctgga acaccctcgg cgagtgcaag tacaccatcg 
000541 gcggcgacca tggcgccggc gagggccaca ccgggtgggt ctcctgcgtc agattctccc 
000601 ccaaccccat ggcccccacc atcgtctccg gctcgtggga tcgcagcgtc aaggtctgga 
000661 acctcacgaa ctgcaagctg cgcaccaagc tcgagggcca caacggctac gtcaacgccg 
000721 tcgccgtgag cccagacggc tccttgtgtg cctccggtgg gaaggacgga accaccctgc 
000781 tctgggatct caccgagggg aagatgctgt acaagctcga cgccggcgcc atcatccact 
000841 ccctctgctt ctcgcccaac cgctactggc tctgcgccgc gacagaggac tccgtcaaga 
000901 tctgggacct cgagtccaag ctcgtcatgc aggacctcaa gccagaagtc caggccttca 
000961 agagccaggt ataccttttg cactttgcct ctctcgttag ccttgcttgt cacatgtatc 
001021 gtgcattcgt tgctgcctga atctgaatag gatgtaccgc gtgatgcatg ttctgtcgtt 
001081 ctgtctgatt aggatgtatt gtgtgattcg ttccatcgtg gttctcgcgt gttgcatttt 
001141 ggattcctgg tgctattatt gttacgccct tcaatttatc aggatcctct gtagtaggat 
001201 agggtagttt tgatgcttat taagctcatt gcgagcaggt tatccaattt aactcacagc 
001261 atcatgttca tgtggtcaag catcacatgt acgtatgtta tcagcaggtc atatacataa 
001321 ttagtcccgc tgatttatat ttctaggtac cgaatcctct gttctgtgtt gatctaatga 
001381 tctaatcagt tttatgatct gttctcagta atacgtactc atcaatgatg ctgttgatgt 
001441 ttatgctcat cccttctcca ctgaattgta tacatgtatt tatattacta tatactaagt 
001501 agatataaaa tgctgcattt tatttgttta catgttagtt tcatcaacca tggtgctgat 
001561 tggtccctca tgtgcctgtg taactatttg gaaaccagca tttcggtata cctctgcata 
001621 tccttgtaga gctgtagcaa tattagtctc tgctataagt aattcaattt aacttcaaac 
001681 tataatttga ccgcaccttc tcactagagt ggtacagttt tgacaaagtt gatctttaca 
001741 ccttgaattt tgtgttagtt ttgcaaactt ttcttaatgt tatgttttgt ttattttcta 
001801 ccacggaaac cttttctgtt acagttctca tacccctttt gattgagcac atgcaatttg 
001861 ttatagagga tgtgcattct ccttgaaatc tcaatagtcc ttaaattgtt ctattgtgca 
001921 ctttggctgt ttccccctag acttatattc tactgtgcac cttgtattaa tatgtattca 
001981 attctttaac tgaacttgat tacgcattta ttttccttaa aaagaatgtg tactgacacc 
002041 tgccgttaca tttgcttaga tgctgtactg cacaagtttg agctggagcg ctgatggcag 
002101 caccctcttc gctggctaca ctgatggaac tatcagggtt tggaaggtct cagggtttgg 
002161 cggctatgca atctaggtgg tgaatttgtt gaaaggctta ggaatcttaa tttaaacatc 
002221 gtgatgccta tcaagttttt gacagttctg aggcataaca tttgcctggt actttctact 
002281 tcattttcat taattaatga ttagatttgc caatgagctt atcggtactc tggaactatg 
002341 gaagaggatc cttatgcata ttttttgttt ttggctaagt tgaaaagata ttagttatgc 
002401 aactttcgga gcctcattgc ctagatgtaa ataatgcttc atcaattgct attttctgat 
002461 gattttgatg gtgctaatta gcttttcatc tgccgctgat

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BY844645 bart09f04 523
more... (Total Hit Count: 60 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ786936 whatl16a13 863
more... (Total Hit Count: 272 )
/rice/oryzabase