更新情報cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK101722 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os04g0401700 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 4 |
| RAP - Location, Length | 20109488 - 20115165 ( + ) ; 5678(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 20109488 - 20109712 ( + ) ; 225 (bp) |
| Exon 2 | Location | 20111002 - 20111424 ( + ) ; 423 (bp) |
| Exon 3 | Location | 20111519 - 20111767 ( + ) ; 249 (bp) |
| Exon 4 | Location | 20112104 - 20112154 ( + ) ; 51 (bp) |
| Exon 5 | Location | 20112261 - 20112521 ( + ) ; 261 (bp) |
| Exon 6 | Location | 20112681 - 20112733 ( + ) ; 53 (bp) |
| Exon 7 | Location | 20113000 - 20113111 ( + ) ; 112 (bp) |
| Exon 8 | Location | 20113223 - 20113480 ( + ) ; 258 (bp) |
| Exon 9 | Location | 20113870 - 20115165 ( + ) ; 1296 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXpro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os04g0401700 | Os04t0401700-01 | 212566 | J033061B08 | 13922 | LOC_Os04g32920.1 | AK101722 | 22141 | Q6VVA6 | HAK1_ORYSJ |
| Os04g0401700 | Os04t0401700-01 | 212566 | J033061B08 | 13922 | LOC_Os04g32920.2 | AK101722 | 22141 | Q6VVA6 | HAK1_ORYSJ |
| Os04g0401700 | Os04t0401700-01 | 212566 | J033061B08 | 13922 | LOC_Os04g32920.3 | AK101722 | 22141 | Q6VVA6 | HAK1_ORYSJ |
| Os04g0401700 | Os04t0401700-01 | 212566 | J033061B08 | 13922 | LOC_Os04g32920.4 | AK101722 | 22141 | Q6VVA6 | HAK1_ORYSJ |
| Os04g0401700 | Os04t0401700-01 | 212566 | J033061B08 | 13922 | LOC_Os04g32920.5 | AK101722 | 22141 | Q6VVA6 | HAK1_ORYSJ |
Chromosome: 4 , position: 20,109,488 - 20,115,165 bp |
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| Sequence (Data source : RAP-DB) | |
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Nucleotide
Fasta Format |
000001 gccggcgaga gagagccagc cagccagcca gccagacagc ttcttcttcc tcgtccctgt 000061 gttgctgctt ctgctgctgc tgccgccttg tgtatagcct tgtgtatctc ctttggcttc 000121 ttctgggtac ctgccggccg gctaagctag ctgatcgccg gccgccggct ctcgttgagc 000181 tcttcttggt gccggccgcg gcgttgttag tgtcgtcttt gctgggtacg taagtgctca 000241 ccctttgtat tttgctctcc gtcgcaaaat gattcatgag ctgtagttct gctggcattt 000301 tctctctctt tctgtctttc tctctttctc atttgataca gtgtatggca aattgcataa 000361 caatcaaagt tattggtgtt gggagaggca aatccgcaat aatttataaa atccgaatca 000421 aaccaaaaga ttttgcctgt gatcttatat gcaaacatat gaagaaacgt ttcatatgta 000481 caagcagtat aatactttct tcatgccacg gtacttgtct ttctagattg tttagtacaa 000541 attaagattt gagaagtagt actctcaaat gataagtacc gtggggtaaa atttgaactc 000601 caaagaaata actattttgg gacagaagaa tgctaccact atgtagaaat taatggttct 000661 gacgtcatag ggagtggtgt ctaaggttgg aagtgaagtt acatccagag aagttggttt 000721 gtgatttctg tatccagttt attattatcc catttggaac tgagtgaggt agggtgtaac 000781 atgacccaag gggatctgag gagtgatgtg actgctattg gactaattct ttttgtccat 000841 gagcaacagc aatctcaggg ttggtgtatg tgacttgaag gtcaaataca gagtggatat 000901 tatactagta ttagaacaga gtatttctct gctcctttat ctttttttaa aaaataggtc 000961 atgtctttta agtagtatat atctgaggta gtaaatgccc atttggactt tttgtgaaga 001021 gtgagttggt ccactctaat tttgtaactc cattattaaa gattaataaa attaccatta 001081 ctaaaacaat cagggcttat tatgcatacc agtgacagtt cagagcaccc ttgaaaatat 001141 gttgttttga cacatacaca tcataatagc atagtaatac ctactacttg tacaccatga 001201 gctggctctc ctctaagttg ttggcatctt ccatatgaac caaaatctga gtaataaatc 001261 accatattat gcatgcatca attgcaagca ccaagaacca agaatcgata gcatttatgc 001321 tgctgattta ctaggcagca aaggaggcca aggaaatcaa tacaatcctt tcttgagcat 001381 tttaatcact cctctccctt tgcttagcaa caaaggatcc catcttcttt gtagacgtca 001441 acaaagatgc agaggatttt gcttggtttt tcacaccatc gccgacctca gaatcaaagc 001501 cattgaccgt gcaggctgca ggaagatcag cagcaagcta agctagtagc ctccaaggtg 001561 cccggagatg tcgtcggcgc tggaggtgga gggctcgggc tcgccgggcg tcgagccggc 001621 ggcgacggcg acggcgagca ggctgaagcg gcacgactcg ctgttcggag acgcggagaa 001681 ggtgagcggc gggaagcacc acggggggtc ggcggtgagc tgggcggtga cgctgcacct 001741 ggcgttccag agcgtgggca tcatctacgg cgacatcggc acgtcgccgc tgtacgtcta 001801 ctccagcacg ttcccggacg gcatcggcca ccgcgacgac ctcgtcggcg tcctctccct 001861 catcctctac accctcatca tcatccccat gctcaagtac gtcttcatcg tcctctacgc 001921 caacgacaat ggcgacggta agaatcgatc aagaaaacct ccttcttctt cctcctcctc 001981 catcatcgat cgtctcagca tctctgaatt gaatctctga tgacgttgca ggtggcacgt 002041 tcgcgctcta ctcgctgatc tcccggtacg ccaagatcag gatgatcccg aaccagcagg 002101 cggaggacgc catggtgtcc aactacagca tcgaggcgcc cagctcgcag ctgaggaggg 002161 cgcagtgggt gaagcacaag ctcgagagca gccgtgccgc caagatggcg ctcttcttcc 002221 tcaccatcct cggcacctcc atggtcatgg gcgacggcac cttgaccccc gccatctccg 002281 gtaaaaaaag aaataaaatc aaacgcatca atcgatcgat tattagtcaa catttatcac 002341 attatgtcag tggtaagagt tgggtttcgg gcgatcttgg ctgtgttccg ttgttggttt 002401 agcggcaatc ggtcacgctt agtggtggcc ggttcggtgc tagccttctt ctggggctgt 002461 gtgttggtgc tgtcggtgtg tgggtggtgg tatacttttt tttcctagtt acgatcttcc 002521 gaggttataa tcttgcaatt ttttcctact ctatctcgtt aaaaaaaaca tttatcacat 002581 tatgtgtata ccttgtgttg tgtgctttgc ctgcagtgct ctctgcggtg agcgggatca 002641 gggagaaagc tccaaacttg actcagagta tgtgtgacag aattttatcc agaatttgtc 002701 actgaatgat tcagaaaatg ttttgaacca aagaaacctg acatttaaat tttcttggtg 002761 gtgttttttg cagcgcaagt cgtgctgatc tcggtggcca tcctgttcat gctcttctcc 002821 gtccagcggt tcggcaccga caaggtcggc tacaccttcg ccccgatcat ctcggtgtgg 002881 ttcctcctca tcgccggcat cgggctgtac aacctcgtcg tccacgagat caccatcctc 002941 aaggccttca atccgtggta catcgtgcag tacttcagga ggaacggcaa gaagggttgg 003001 gtgtctctcg gtggcgtcgt cctctgtgtc acaggtaatt aattatactt aattaccttc 003061 cattttctga caaatgttac acaaatgtaa ctgcagatga atccattcct aattctgttg 003121 tagcctgtag taaattttta ctgattctga ctagctgtaa gtaataacct taatatgatt 003181 ccatctgcaa caggcacaga gggaatgttt gccgacctgg gccatttcaa catcagggcc 003241 gtgcaggtat gtatatatgg acacacacct gacacccatg ctttgtctga gaaatagcag 003301 tagccagggt ttgaatatcg cgcagcacgg ttatcgtact aaccacgtgc ggtaaccttt 003361 tcagtttttt taaaccctcg gtttttcacg gtaaccgtga tatcgctggg tagcagtaac 003421 cctcaccaaa acgcgaggaa ggggaacccc ttgtagtaac aacctggatg tctgaactct 003481 gaaacggctc tggttttttc tttctgtcgc agatcagctt caactgcatc ctgttcccat 003541 cggtggcgct ctgctacatc gggcaggcag cgtacctgag gaaattccct gagaatgtca 003601 gtgacacctt ctacaaatcc atcccaggca agtacagaga tcgactgaat tttggtagaa 003661 cagagtatat tcatcactga cgcttactct gctctgctaa ctctgtcttc ttcatgtgct 003721 gctgctgctg catcgcaggg ccgctgttct ggccgacgtt catcgtcgcg atcctcgccg 003781 ccatcatcgc cagccaggcc atgctctccg gcgcgtttgc catcctctcc aaggcgctgt 003841 ccctcgggtg cttgcccagg gtccgggtga tccacacctc taagaagtac gaggggcagg 003901 tgtacatccc cgaggtgaac ttcatgatgg gtctcgccag catcatcgtc accatcgcct 003961 tcaggaccac caccagcatc ggcaacgcct acggtaacat ctctttttct catcatcagt 004021 ttaaactttt aggttgaact ggttgatcga ctgatatgat ctattgagtt gaaatatggt 004081 tttcaatttt gaaatttagt aaatttcgat atttttgacc gaaattattt aaaaatttga 004141 ttaattttga ataaatttga ataaaattcg accaagttca cataaatttg caaaaaaaag 004201 agaaaatttc ggatgagcta tgtgcttggc ggtggggggc gaaatttctg aaatttcaat 004261 ccctgagttg aactggttga ctaactggtt tgagcttttg agttgaactg gttgactgat 004321 tgatatgagc ttttgtgttg aactgatcgg taactgatct gaacgtttat gggtgtatat 004381 agggatctgt gtggtgacga cgttcatggt gacgacgcac ctgatgacgg tggtgatgct 004441 gctgatatgg aagaagcacc tggtgttcat cctgctcttc tactgcgtgt tcgggttcac 004501 ggaggtggtg tacctgtcgt cgatcctgtc caagttcgtg gacggcgggt acctcccctt 004561 ctgcttcgcc atggtgctga tgacgatgat ggcgacgtgg cactacgtcc acgtgcggcg 004621 ctactggtac gagctggacc acatcgtccc cacggcggag ctggcgtcgc tgctggagga 004681 gaacggcggc gtgcggcggg tccccggcgt gggcctcctc tacacggagc tcgtccaggg 004741 catcccgccg ctgttcccgc gcctcgtccg caagatcccc tcggtccacg ccgtcttcgt 004801 cttcatctcc atcaagcacc tccccatccc gcacgtcgcc gccgccgagc gcttcctgtt 004861 ccgccaggtc ggcccccgcg cccgccgcgt cttccgctgc gtcgcccgct acggctacac 004921 cgacgccctc gaggagcccc gggagttcgc cgccttcctc gtcgacggcc tcaagatgtt 004981 catccaggag gagtccgcct tcgctcctca tcaagagatg atcgatgccg ccgccgacga 005041 cgacgacgag gcggcggcga ggccgaggcg gtcgacgagc tcggccgtgc acagcgagga 005101 ggcgatccag gcggcgtcgt cggggaggac gacggccagc agcgtccagc tccaggcggg 005161 cggcgagccg ccggcggcga tggacgtgga ggaggagaag cggctgatcg acagggaggt 005221 gggccgcggc gtggtgtacc tgatgggcga ggccaacgtg tcggcggggc ccaactcgtc 005281 catcctcaag aggatcgcgg tgaactacat ctacaccttc ctgaggaaga acctgacaga 005341 agggcacagg gcactggcga ttccaaacga tcagctgctc aaggttggga tcacgtatga 005401 aatctaggca tttgatacat ctgatctgat atcaaagtat acatatatat gtgggaaaaa 005461 aaatgagcct agtataaacc atgggttttg ttgatgatgc tgatgttgga agagagggca 005521 aagtgccttt tttgtttgtt gaataagtag tttcagctga aagtgttggc aggcagggag 005581 ggtttggttt ttctttcgcc tctgtacagt gtggtttgtg taaacggcgt gtgccaactt 005641 gagtagaagg tttctcactg gtggtgtgtt gtccatgc |
相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AK251377 | FLbaf113h14 | 2875 |
| more... (Total Hit Count: 2 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ679320 | whok16c01 | 783 |
| more... (Total Hit Count: 24 ) | ||
