cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068392     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0884300 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 40128678 -  40131163  ( - );   2486(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 40128678 -  40129653 ( - );   976 (bp)
Exon 2 Location 40130515 -  40130789 ( - );   275 (bp)
Exon 3 Location 40130889 -  40131163 ( - );   275 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0884300 Os01t0884300-01 204011 J013149P14 3661 LOC_Os01g66120.1 AK068392 27988 AP008207.2 255672756 BAF06930.1 113534547 NC_008394.4 297598437 NM_001051551.1 115441472 NP_001045016.1 115441473 Q7F2L3 NAC48_ORYSJ
Os01g0884300 Os01t0884300-01 204011 J013149P14 3661 LOC_Os01g66120.3 AK068392 27988 AP008207.2 255672756 BAF06930.1 113534547 NC_008394.4 297598437 NM_001051551.1 115441472 NP_001045016.1 115441473 Q7F2L3 NAC48_ORYSJ


Chromosome: 1 ,  position: 40,128,678 - 40,131,163 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caagccctcc tctcctcttc ccaacactag taggataaag ccacagagag agcagtagta 
000061 gtagcgagct cgccggagaa cggacgatca ccggagaagg gggagagaga tgagcggcgg 
000121 tcaggacctg cagctgccgc cggggttccg gttccacccg acggacgagg agctggtgat 
000181 gcactacctc tgccgccgct gcgccggcct ccccatcgcc gtccccatca tcgccgagat 
000241 cgacctctac aagttcgatc catggcagct tccccgtacg ataatcctcc tcctccatcc 
000301 tcccaatcat caccaccatc aacgccgtcg tgaattgatt gattgatttg gtttgatttg 
000361 ttggtgttgt gtagggatgg cgctgtacgg agagaaggag tggtacttct tctccccgcg 
000421 agaccgcaag tacccgaacg ggtcgcggcc gaaccgcgcc gccgggtcgg ggtactggaa 
000481 ggcgaccggc gccgacaagc cggtgggctc gccgaagccg gtggcgatca agaaggccct 
000541 cgtcttctac gccggcaagg cgcccaaggg cgagaagacc aactggatca tgcacgagta 
000601 ccgcctcgcc gacgtcgacc gctccgcccg caagaagaac agcctcaggg taagcaaaaa 
000661 ccacacccaa gattccatca ctaaattcat tactaaatct gtgttcatcg tgattattga 
000721 ttaatttagt cacctaatta ttcgcccaaa accgcagctc gattcgaaca gctggtggta 
000781 cttctagatg gatactacta tttagatatt tgatatattt attttgcaac ttgtttaatc 
000841 agctcatttc gctttcgaaa tgaattggga ggataagctt agcgtggccc acggctttgg 
000901 gccgcagaaa ttaattggag acgttggctc atctcatctc tagggccgca cctacgtggt 
000961 gcaacttgcg cagccacgat cgaatcgttc gagcgtgaaa cccattgccg tcaccacctc 
001021 gcctcatccc tttcagggac caatcggttt ttagccctac gcgcccctgc gatcgcgacg 
001081 cccacgatag ctaaatcccg aaagcaaata agcagtaatc ggacagcgac tcgaccggga 
001141 ttagttaaac aatggcttga ttaattagat gctggaattt ggagccttct gataagttta 
001201 gggcctgttt ggcacagctc cagctccagc ttcacccctt ctggagctgg agctcagcca 
001261 aacagtttcg gctccaccaa aacggggagt ggagctgggt ggagctctct cacaaaatga 
001321 actagagttg tggagttggg tttaggcagc tccacaactc cactccagac tcaactcctg 
001381 gagttaaatt taggagttgg agctgtacca aacaggccct tagttttgca cttggtactt 
001441 taattttttt ttgagtgagt gtaaatttgt ttctaaactt tgtttatgaa tttgttttgt 
001501 attggtgcag ttggatgatt gggtgctgtg ccggatttac aacaagaagg gcgggctgga 
001561 gaagccgccg gccgcggcgg tggcggcggc ggggatggtg agcagcggcg gcggcgtcca 
001621 gaggaagccg atggtggggg tgaacgcggc ggtgagctcc ccgccggagc agaagccggt 
001681 ggtggcgggg ccggcgttcc cggacctggc ggcgtactac gaccggccgt cggactcgat 
001741 gccgcggctg cacgccgact cgagctgctc ggagcaggtg ctgtcgccgg agttcgcgtg 
001801 cgaggtgcag agccagccca agatcagcga gtgggagcgc accttcgcca ccgtcgggcc 
001861 catcaacccc gccgcctcca tcctcgaccc cgccggctcc ggcggcctcg gcggcctcgg 
001921 cggcggcggc agcgaccccc tcctccagga catcctcatg tactggggca agccattcta 
001981 gacgaccaaa aaaaaaaaaa aacaaccgca ttggcagcaa tggtgtcact gaacaccgtg 
002041 caggctagct agcttcatgg ccggtgaact ttgactcagg cgagccgccg gagttgactc 
002101 aaagataatt aaaagaagtg ttttaagtgg attggattgg attagacaga ggagatgagg 
002161 actcgagaaa ggcggcgatg agaccgtggt tggggggacc ctggcctgga ctgaacgacg 
002221 acgaggcagc agcagaaaga tggtgcaatt gcatcgggtg gcatgtcagt gtgtgtgtat 
002281 agtggcatgt acatagtaca tggtgattga ttcggtatac agggggctag ctttcctgtt 
002341 tctgtttctt cattggttaa ttattactcc cattataagg tcttcttcag ggttgctagc 
002401 ttaattaatt aattaattag cccagtggtt gaagtgtaag tcaaaattca tcaagtcaga 
002461 gactggaata atacaataca gtactg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BY846553 bart33b03 541
more... (Total Hit Count: 30 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ927495 whchan33e11 520
more... (Total Hit Count: 18 )
/rice/oryzabase