cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121575     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0168100 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 3677290 -  3678967  ( - );   1678(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3677290 -  3678472 ( - );   1183 (bp)
Exon 2 Location 3678612 -  3678967 ( - );   356 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0168100 Os03t0168100-01 216294 J033036H02 21190 LOC_Os03g07180.1 AK121575 23390 AP008209.2 255674134 BAF11001.1 113547558 NC_008396.2 297602023 NM_001055622.1 115450972 NP_001049087.1 115450973
Os03g0168100 Os03t0168100-01 216294 J033036H02 21190 LOC_Os03g07180.2 AK121575 23390 AP008209.2 255674134 BAF11001.1 113547558 NC_008396.2 297602023 NM_001055622.1 115450972 NP_001049087.1 115450973
Os03g0168100 Os03t0168100-01 216294 J033036H02 21190 LOC_Os03g07180.3 AK121575 23390 AP008209.2 255674134 BAF11001.1 113547558 NC_008396.2 297602023 NM_001055622.1 115450972 NP_001049087.1 115450973


Chromosome: 3 ,  position: 3,677,290 - 3,678,967 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actgttgggt tcgcgacttc tcgtattctc tagcacgcga aagcgattat ctgttcttgt 
000061 ttggaggagt tcacgtacgt cacgagcaat ggcgatcgtg tcgcggtcga ggaggctggc 
000121 ggtgacgctg ctgctgctgc tgtttgctgt ggtggcggcg gccgccgtgg cgacgaaggc 
000181 ggaggctggc acggaggacg cggcgagcaa ggaggacgag tcgtggacgg gctgggccaa 
000241 ggagaagatc accgaggggc tcgggctgaa gcaccacgtc gccgacgtcg acgaggagga 
000301 ggacgccgcg cgcaaggccg gccacgccgc caagtccgcc cagcacaccg cctccggtac 
000361 gtcgaaactc gccgcgcgcc gccgcgcgcg ctcgccggcg gcatcttgcc atgcctgatg 
000421 ccatcgtgtg ttggagctaa ttaacatgtg ggtgtgtgtg tgtgtgtgtg tgtgtgtgtg 
000481 cgcgcgactg tgcagaggca gggaggcaga cgagcaagaa ggccggggac gcgaaggagg 
000541 cggcggaggc gacggcgtcg ggcgcgtcga gcaaggctga gcaggcaaag gagaagacga 
000601 aggaggcggc gaagggcgcc gccggcgagg cgaccaggag agcggagcag gccaagcaca 
000661 agaccaagga ggccgccgag gcggccggcg agaggggcgc cgaggtgcac gagcagtcga 
000721 agcagggcaa ggccaaggtc gaagagacgg ccaaggagaa ggccggcgag gggtacgacg 
000781 ccgccaagga caaggccggc aaggcgcagg agactctccg gcaatccacc gacgccgcca 
000841 aggacaaggc cggcaaggcg caggagactc tccggcaatc caccgacgcc gccagggaca 
000901 aggccggcaa ggcgcaggag acgctccggc aatccaccga cgccgccgcg gagaaggccg 
000961 gggcggcgaa ggacagcgcg tgggagagga ccagctcggc gaaggacgcc gcggcggaga 
001021 aggccgggtc ggcgaaggac gcggcgtggg agaagacaag ctcggcgaag gacgccgcgg 
001081 cggagaaggc cggggcggcg aaggacgcgg cgcgggagaa ggcggaggcg gccggcgaga 
001141 aggcgaggca gtccaaggag gcggcgaagg ggaaggccgg cgcggcgaag gacgcggcgt 
001201 gggagaaggc ggaggcggcg aaggacgccg cgtgggagac ggcggaggcg gcgagggaga 
001261 aggcgaacga ggggtacgag aaggtgaagg agaaggcgaa ggagaaggtg gaggaggtga 
001321 aggagcgcgt caccggcgcc gacgacgccg ccgatcacgg caaggagaag aagcatcacc 
001381 accgccacgt cgacggcaag caaaagcccc gcacggtcga cgagctctga gctagccgcc 
001441 ggcgtacgga caccgattag cccatgtcaa catagcactt ttcagtgatg tttttcagtg 
001501 tgtttgctgt agctctccac acgatgccgt tttctgtatg ctgttgcatt ttgtacaata 
001561 atgtgatctt tctgtagaga acttgtttgt attctgtaga gaacttgttt gaaacaagtt 
001621 actgtgtttt tcccactgaa acttcactca aaactgaatc ttttgctgtt ttccacgg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
BY866888 rbart23b05 503 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ287683 whsl10f18 702
more... (Total Hit Count: 20 )
/rice/oryzabase